Wall clock time and date at job start Mon Mar 30 2020 18:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47469 * 2 1 4 4 H 1.09004 * 109.47118 * 305.68315 * 3 2 1 5 5 C 1.50700 * 109.47353 * 185.67981 * 3 2 1 6 6 H 1.07997 * 120.00017 * 240.00648 * 5 3 2 7 7 C 1.37874 * 119.99796 * 60.00005 * 5 3 2 8 8 N 1.31519 * 120.00333 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00073 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47125 * 59.99466 * 9 7 5 11 11 H 1.48500 * 109.47322 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46929 * 300.00160 * 9 7 5 13 13 N 1.46900 * 109.46747 * 65.68079 * 3 2 1 14 14 C 1.46906 * 110.99689 * 202.28262 * 13 3 2 15 15 H 1.09000 * 109.47161 * 337.62722 * 14 13 3 16 16 C 1.53003 * 109.47101 * 97.62953 * 14 13 3 17 17 C 1.52995 * 109.47204 * 296.61490 * 16 14 13 18 18 C 1.50701 * 109.46814 * 217.62605 * 14 13 3 19 19 C 1.38229 * 119.61632 * 154.72730 * 18 14 13 20 20 C 1.38630 * 119.16262 * 179.75788 * 19 18 14 21 21 C 1.38673 * 118.41732 * 0.50821 * 20 19 18 22 22 C 1.38178 * 119.16554 * 359.73218 * 21 20 19 23 23 N 1.31856 * 119.62271 * 335.00387 * 18 14 13 24 24 H 1.09005 * 109.46599 * 297.68767 * 1 2 3 25 25 H 1.09000 * 109.47274 * 177.69430 * 1 2 3 26 26 H 1.08997 * 109.47377 * 57.68741 * 1 2 3 27 27 H 1.09000 * 109.47237 * 120.00352 * 2 1 3 28 28 H 1.09007 * 109.46674 * 239.99746 * 2 1 3 29 29 H 0.96993 * 120.00101 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00576 * 78.33071 * 13 3 2 31 31 H 1.09008 * 109.47063 * 56.61650 * 16 14 13 32 32 H 1.09006 * 109.46880 * 176.61244 * 16 14 13 33 33 H 1.09004 * 109.47515 * 185.75912 * 17 16 14 34 34 H 1.09003 * 109.46886 * 305.75366 * 17 16 14 35 35 H 1.08998 * 109.47345 * 65.75395 * 17 16 14 36 36 H 1.08007 * 120.41919 * 359.97438 * 19 18 14 37 37 H 1.07998 * 120.78927 * 180.21662 * 20 19 18 38 38 H 1.08000 * 120.41578 * 179.71498 * 21 20 19 39 39 H 1.08000 * 119.62333 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5961 1.9849 -0.8348 5 6 3.5405 1.4447 -0.1406 6 1 4.1545 1.8861 0.6305 7 6 4.1294 0.8832 -1.2536 8 7 3.3818 0.3460 -2.1929 9 14 5.9892 0.8854 -1.4277 10 1 6.5937 0.1461 -0.2904 11 1 6.3678 0.2272 -2.7038 12 1 6.4848 2.2854 -1.4273 13 7 1.6656 2.0942 1.2621 14 6 1.6477 3.5557 1.1148 15 1 2.2751 3.8436 0.2712 16 6 0.2129 4.0258 0.8671 17 6 -0.2931 3.4449 -0.4547 18 6 2.1751 4.1939 2.3740 19 6 2.7412 5.4537 2.3160 20 6 3.2187 6.0340 3.4809 21 6 3.1182 5.3179 4.6642 22 6 2.5445 4.0610 4.6440 23 7 2.0962 3.5421 3.5174 24 1 -0.3633 0.4775 0.9101 25 1 -0.3634 -1.0268 -0.0413 26 1 -0.3634 0.5493 -0.8685 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.7961 -0.0493 -2.9757 30 1 2.2813 1.8138 2.0106 31 1 -0.4266 3.6860 1.6818 32 1 0.1908 5.1146 0.8177 33 1 -1.2749 3.8602 -0.6820 34 1 0.4030 3.7000 -1.2538 35 1 -0.3678 2.3608 -0.3703 36 1 2.8074 5.9807 1.3756 37 1 3.6627 7.0184 3.4664 38 1 3.4840 5.7372 5.5898 39 1 2.4628 3.4967 5.5612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:55 Heat of formation + Delta-G solvation = 23.025883 kcal Electronic energy + Delta-G solvation = -18618.249405 eV Core-core repulsion = 15946.256536 eV Total energy + Delta-G solvation = -2671.992870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02676 -36.83898 -33.84071 -32.21957 -31.56327 -30.90567 -29.95801 -26.52910 -24.98087 -23.26911 -22.52352 -22.27494 -19.82846 -19.35360 -16.93614 -16.35900 -15.99998 -15.31342 -14.73863 -14.36653 -13.83922 -13.78938 -13.24621 -13.03390 -12.87705 -12.61860 -12.09974 -11.88301 -11.65865 -11.30296 -11.15532 -10.91343 -10.83688 -10.70794 -10.45368 -10.21960 -10.04195 -9.66448 -9.52007 -9.34993 -9.04677 -8.98072 -8.64532 -8.29217 -7.12645 -5.94423 -4.07660 1.34264 1.50733 3.29235 3.34485 3.37462 4.05724 4.42431 4.57497 4.90174 4.99506 5.22599 5.27291 5.32013 5.54011 5.70322 5.75977 5.87998 6.00880 6.08080 6.28396 6.37129 6.39626 6.45881 6.50124 6.56934 6.59362 6.76118 6.84554 6.96846 7.06178 7.23177 7.27875 7.52776 7.67415 7.83569 8.16213 8.27149 8.29223 8.46561 8.82240 9.08324 9.59842 11.04331 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.008092 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.144077 B = 3459.329651 C = 4323.332119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.208 3.792 4 H 0.043 0.957 5 C -0.544 4.544 6 H 0.049 0.951 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.671 5.671 14 C 0.138 3.862 15 H 0.070 0.930 16 C -0.097 4.097 17 C -0.154 4.154 18 C 0.142 3.858 19 C -0.172 4.172 20 C -0.078 4.078 21 C -0.191 4.191 22 C 0.098 3.902 23 N -0.465 5.465 24 H 0.050 0.950 25 H 0.023 0.977 26 H 0.039 0.961 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.339 0.661 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 9.194 8.518 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.100 3.900 4 H 0.061 0.939 5 C -0.584 4.584 6 H 0.067 0.933 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.303 5.303 14 C 0.027 3.973 15 H 0.087 0.913 16 C -0.136 4.136 17 C -0.211 4.211 18 C 0.004 3.996 19 C -0.192 4.192 20 C -0.104 4.104 21 C -0.211 4.211 22 C -0.059 4.059 23 N -0.174 5.174 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.071 8.180 8.228 12.296 hybrid contribution 2.641 1.114 -0.112 2.869 sum -1.430 9.294 8.116 12.421 Atomic orbital electron populations 1.21771 0.99075 0.98257 1.00449 1.21483 0.92089 0.99360 1.01533 1.19376 0.92536 0.91422 0.86665 0.93901 1.21895 0.93161 1.38258 1.05039 0.93296 1.24904 0.97567 0.95096 0.95814 1.69862 1.34657 1.38488 1.09304 0.86784 0.86518 0.78119 0.77312 1.20381 1.21234 1.20519 1.60865 1.57705 1.02354 1.09339 1.20465 0.95266 0.90999 0.90620 0.91262 1.21446 0.95739 0.97880 0.98544 1.21927 0.99017 1.03608 0.96562 1.21827 0.92438 0.90909 0.94439 1.21994 1.00798 0.97028 0.99370 1.21496 0.96816 0.99529 0.92566 1.22041 1.03062 0.97059 0.98904 1.22772 0.93815 0.92862 0.96450 1.67482 1.15958 1.35795 0.98143 0.93131 0.95789 0.94197 0.95264 0.89257 0.92901 0.84198 0.91948 0.93587 0.94309 0.93079 0.90046 0.85027 0.85377 0.85446 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.63 37.16 0.32 -2.54 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.70 16 3 C 0.21 5.07 1.13 -68.87 -0.08 4.99 16 4 H 0.04 1.12 5.70 -51.93 -0.30 0.82 16 5 C -0.54 -14.73 8.22 -34.44 -0.28 -15.01 16 6 H 0.05 1.35 7.78 -52.49 -0.41 0.94 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.67 -14.41 5.22 -102.16 -0.53 -14.94 16 14 C 0.14 2.64 2.31 -68.86 -0.16 2.48 16 15 H 0.07 1.46 7.41 -51.93 -0.38 1.07 16 16 C -0.10 -1.65 5.60 -26.73 -0.15 -1.80 16 17 C -0.15 -2.66 8.50 37.15 0.32 -2.35 16 18 C 0.14 2.49 5.73 -82.58 -0.47 2.01 16 19 C -0.17 -2.55 9.76 -39.44 -0.39 -2.94 16 20 C -0.08 -0.97 10.18 -39.28 -0.40 -1.37 16 21 C -0.19 -2.30 10.11 -39.44 -0.40 -2.70 16 22 C 0.10 1.38 11.18 -17.55 -0.20 1.18 16 23 N -0.46 -8.10 9.01 -9.47 -0.09 -8.19 16 24 H 0.05 1.01 7.78 -51.93 -0.40 0.61 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.81 6.85 -51.93 -0.36 0.46 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.39 5.94 -51.93 -0.31 2.09 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.34 7.70 7.14 -39.29 -0.28 7.42 16 31 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.92 7.74 -51.93 -0.40 0.52 16 35 H 0.08 1.55 4.10 -51.93 -0.21 1.34 16 36 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -28.52 310.19 -8.46 -36.97 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.99 Total: 8.36 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.13 Total: -18.96 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.01 Total: -47.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.52 -8.46 -36.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.000 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds