Wall clock time and date at job start Mon Mar 30 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46700 * 2 1 4 4 H 1.09000 * 109.47297 * 54.56761 * 3 2 1 5 5 C 1.50707 * 109.47014 * 174.56586 * 3 2 1 6 6 H 1.08003 * 119.99877 * 119.99630 * 5 3 2 7 7 C 1.37878 * 120.00073 * 300.00251 * 5 3 2 8 8 N 1.31519 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00050 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47310 * 59.99674 * 9 7 5 11 11 H 1.48506 * 109.47075 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47153 * 299.99311 * 9 7 5 13 13 N 1.46904 * 109.47104 * 294.56135 * 3 2 1 14 14 C 1.46901 * 110.99615 * 104.94753 * 13 3 2 15 15 H 1.09000 * 109.47250 * 344.41252 * 14 13 3 16 16 C 1.52999 * 109.46875 * 104.40985 * 14 13 3 17 17 C 1.52997 * 109.47183 * 294.35059 * 16 14 13 18 18 C 1.50694 * 109.46994 * 224.41056 * 14 13 3 19 19 C 1.38234 * 119.61855 * 154.72873 * 18 14 13 20 20 C 1.38621 * 119.16107 * 179.75403 * 19 18 14 21 21 C 1.38677 * 118.42244 * 0.50929 * 20 19 18 22 22 C 1.38186 * 119.15983 * 359.73203 * 21 20 19 23 23 N 1.31857 * 119.61895 * 335.00080 * 18 14 13 24 24 H 1.09000 * 109.47474 * 298.98226 * 1 2 3 25 25 H 1.09006 * 109.46962 * 178.98397 * 1 2 3 26 26 H 1.08996 * 109.47290 * 58.98403 * 1 2 3 27 27 H 1.08996 * 109.47479 * 119.99827 * 2 1 3 28 28 H 1.09001 * 109.47281 * 240.00182 * 2 1 3 29 29 H 0.97000 * 119.99882 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00097 * 228.89651 * 13 3 2 31 31 H 1.08999 * 109.47333 * 54.35664 * 16 14 13 32 32 H 1.09012 * 109.46881 * 174.35368 * 16 14 13 33 33 H 1.09005 * 109.47075 * 184.49949 * 17 16 14 34 34 H 1.08993 * 109.47699 * 304.50232 * 17 16 14 35 35 H 1.09000 * 109.46719 * 64.50609 * 17 16 14 36 36 H 1.07997 * 120.41399 * 359.97438 * 19 18 14 37 37 H 1.08000 * 120.79208 * 180.21426 * 20 19 18 38 38 H 1.07993 * 120.41888 * 179.70757 * 21 20 19 39 39 H 1.07999 * 119.61133 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.5992 1.9837 0.8373 5 6 3.5409 1.4448 0.1346 6 1 4.1517 1.8874 -0.6384 7 6 4.1344 0.8817 1.2444 8 7 3.3905 0.3430 2.1858 9 14 5.9948 0.8850 1.4115 10 1 6.4893 2.2853 1.4118 11 1 6.3786 0.2247 2.6851 12 1 6.5957 0.1482 0.2707 13 7 1.6602 2.0961 -1.2597 14 6 0.5453 3.0300 -1.0530 15 1 0.0754 2.8276 -0.0906 16 6 1.0730 4.4661 -1.0709 17 6 1.9946 4.6858 0.1304 18 6 -0.4684 2.8536 -2.1540 19 6 -1.7881 3.1981 -1.9292 20 6 -2.7117 3.0367 -2.9502 21 6 -2.2736 2.5224 -4.1613 22 6 -0.9393 2.1955 -4.3108 23 7 -0.0874 2.3672 -3.3188 24 1 -0.3634 0.4979 0.8989 25 1 -0.3633 -1.0276 -0.0182 26 1 -0.3633 0.5295 -0.8807 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8080 -0.0528 2.9667 30 1 2.4509 2.5637 -1.6771 31 1 1.6298 4.6371 -1.9922 32 1 0.2353 5.1616 -1.0182 33 1 2.3069 5.7296 0.1626 34 1 1.4611 4.4376 1.0479 35 1 2.8726 4.0467 0.0364 36 1 -2.0949 3.5914 -0.9713 37 1 -3.7488 3.3006 -2.8045 38 1 -2.9665 2.3788 -4.9771 39 1 -0.5903 1.7941 -5.2507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:59 Heat of formation + Delta-G solvation = 23.410928 kcal Electronic energy + Delta-G solvation = -18645.921797 eV Core-core repulsion = 15973.945624 eV Total energy + Delta-G solvation = -2671.976173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92877 -37.00522 -33.90251 -32.10602 -31.58184 -30.89877 -29.66345 -26.95708 -24.82894 -23.17894 -22.54322 -22.27307 -20.17347 -19.29918 -16.85265 -16.31091 -15.87826 -15.22936 -14.83444 -14.24489 -14.04846 -13.62948 -13.30048 -13.17831 -12.87849 -12.45178 -12.08086 -11.96761 -11.82143 -11.34037 -11.17868 -10.93527 -10.81408 -10.71447 -10.64872 -10.41960 -10.07098 -9.63889 -9.55183 -9.38420 -8.91913 -8.80171 -8.58587 -8.36987 -7.08208 -5.98457 -4.05759 1.41062 1.59740 3.32352 3.37229 3.40251 4.14206 4.42652 4.69465 4.89556 5.04458 5.24987 5.30476 5.36426 5.51331 5.52185 5.65438 5.80909 5.95371 6.04213 6.19784 6.26188 6.37657 6.38057 6.41214 6.47151 6.52059 6.64586 6.72591 6.94347 7.01245 7.13324 7.24825 7.54595 7.65319 7.82228 8.03184 8.33762 8.42412 8.55698 8.78688 9.09726 9.59972 11.05805 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030178 B = 0.006314 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.594062 B = 4433.560759 C = 4737.116603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C 0.219 3.781 4 H 0.012 0.988 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.664 5.664 14 C 0.133 3.867 15 H 0.082 0.918 16 C -0.134 4.134 17 C -0.155 4.155 18 C 0.161 3.839 19 C -0.180 4.180 20 C -0.080 4.080 21 C -0.194 4.194 22 C 0.094 3.906 23 N -0.445 5.445 24 H 0.033 0.967 25 H 0.024 0.976 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.337 0.663 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 6.311 -7.453 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.030 0.970 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.295 5.295 14 C 0.021 3.979 15 H 0.100 0.900 16 C -0.173 4.173 17 C -0.212 4.212 18 C 0.022 3.978 19 C -0.201 4.201 20 C -0.106 4.106 21 C -0.214 4.214 22 C -0.063 4.063 23 N -0.154 5.154 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.338 5.454 -7.582 13.207 hybrid contribution 0.342 0.807 0.681 1.110 sum -8.996 6.261 -6.900 12.952 Atomic orbital electron populations 1.21781 0.99865 0.98548 0.99603 1.21530 0.91308 0.99872 1.01598 1.19223 0.93943 0.91103 0.84582 0.96992 1.21436 0.91679 1.38123 1.04932 0.92472 1.24895 0.97871 0.95135 0.95780 1.69883 1.34793 1.38511 1.09363 0.86679 0.85991 0.78157 0.77268 1.20401 1.21406 1.20270 1.60545 1.09470 1.30915 1.28552 1.20604 0.92444 0.91415 0.93470 0.90010 1.22082 0.99310 0.96486 0.99466 1.21836 1.01123 1.00917 0.97342 1.21675 0.92344 0.90794 0.93021 1.21954 0.94484 1.03369 1.00269 1.21431 0.99466 0.96654 0.93085 1.22035 0.97769 1.03110 0.98477 1.22842 0.89758 0.95938 0.97780 1.67638 1.37767 1.10203 0.99755 0.94831 0.95651 0.93790 0.89482 0.94628 0.92940 0.84418 0.91862 0.92843 0.93713 0.92877 0.90191 0.85427 0.85612 0.85686 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.35 37.15 0.35 -2.68 16 2 C -0.10 -2.58 5.45 -26.73 -0.15 -2.72 16 3 C 0.22 5.31 1.31 -68.86 -0.09 5.22 16 4 H 0.01 0.32 6.88 -51.93 -0.36 -0.03 16 5 C -0.52 -13.81 7.78 -34.44 -0.27 -14.08 16 6 H 0.06 1.50 7.38 -52.48 -0.39 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.66 -14.03 5.15 -102.16 -0.53 -14.56 16 14 C 0.13 2.40 1.49 -68.87 -0.10 2.30 16 15 H 0.08 1.56 6.88 -51.93 -0.36 1.20 16 16 C -0.13 -2.15 5.21 -26.73 -0.14 -2.29 16 17 C -0.15 -2.62 9.16 37.16 0.34 -2.28 16 18 C 0.16 2.72 5.00 -82.59 -0.41 2.31 16 19 C -0.18 -2.57 9.76 -39.44 -0.39 -2.96 16 20 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 16 21 C -0.19 -2.34 10.11 -39.44 -0.40 -2.74 16 22 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 23 N -0.45 -7.82 9.73 -9.47 -0.09 -7.91 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.93 6.24 -51.93 -0.32 0.60 16 27 H 0.09 2.37 5.94 -51.93 -0.31 2.06 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.34 7.24 6.97 -39.29 -0.27 6.97 16 31 H 0.06 1.02 8.03 -51.93 -0.42 0.61 16 32 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.57 6.38 -51.93 -0.33 1.24 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -28.46 312.41 -8.37 -36.83 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.12 Total: 7.62 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -1.95 Total: -18.47 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.01 Total: -46.69 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.46 -8.37 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.239 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds