Wall clock time and date at job start Mon Mar 30 2020 18:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47170 * 2 1 4 4 H 1.09001 * 109.47287 * 56.49498 * 3 2 1 5 5 C 1.50700 * 109.47057 * 176.49331 * 3 2 1 6 6 H 1.08002 * 120.00243 * 119.99855 * 5 3 2 7 7 C 1.37881 * 119.99924 * 299.99847 * 5 3 2 8 8 N 1.31519 * 120.00013 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00094 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47312 * 59.99626 * 9 7 5 11 11 H 1.48501 * 109.47446 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47033 * 299.99687 * 9 7 5 13 13 N 1.46900 * 109.47026 * 296.48914 * 3 2 1 14 14 C 1.46895 * 110.99723 * 149.88836 * 13 3 2 15 15 H 1.09002 * 109.47586 * 326.47194 * 14 13 3 16 16 C 1.53000 * 109.47096 * 86.47370 * 14 13 3 17 17 C 1.50705 * 109.47060 * 206.47107 * 14 13 3 18 18 C 1.38233 * 119.61783 * 155.00294 * 17 14 13 19 19 C 1.38623 * 119.16245 * 179.97438 * 18 17 14 20 20 C 1.38681 * 118.41665 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.41566 * 179.97438 * 20 19 18 22 22 C 1.38174 * 119.16486 * 359.97438 * 20 19 18 23 23 N 1.31846 * 119.61928 * 334.72775 * 17 14 13 24 24 H 1.09004 * 109.47127 * 55.30145 * 1 2 3 25 25 H 1.08992 * 109.47321 * 175.30433 * 1 2 3 26 26 H 1.09006 * 109.47122 * 295.30340 * 1 2 3 27 27 H 1.09001 * 109.46681 * 119.99602 * 2 1 3 28 28 H 1.09001 * 109.47074 * 239.99556 * 2 1 3 29 29 H 0.96994 * 119.99979 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00058 * 273.83927 * 13 3 2 31 31 H 1.09007 * 109.47333 * 179.97438 * 16 14 13 32 32 H 1.08999 * 109.47360 * 299.99516 * 16 14 13 33 33 H 1.09004 * 109.47016 * 60.00277 * 16 14 13 34 34 H 1.07997 * 120.41719 * 0.02562 * 18 17 14 35 35 H 1.07997 * 120.79287 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47330 * 89.99599 * 21 20 19 37 37 H 1.08997 * 109.47393 * 210.00093 * 21 20 19 38 38 H 1.09005 * 109.47192 * 329.99818 * 21 20 19 39 39 H 1.08004 * 119.61635 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6263 1.9742 0.8569 5 6 3.5445 1.4433 0.0869 6 1 4.1306 1.8947 -0.7000 7 6 4.1727 0.8679 1.1710 8 7 3.4590 0.3188 2.1295 9 14 6.0376 0.8696 1.2791 10 1 6.5322 2.2698 1.2794 11 1 6.4615 0.1941 2.5318 12 1 6.6017 0.1456 0.1117 13 7 1.6208 2.1100 -1.2396 14 6 1.4291 3.5502 -1.0230 15 1 1.0569 3.7194 -0.0125 16 6 2.7645 4.2751 -1.2026 17 6 0.4318 4.0800 -2.0209 18 6 -0.2938 5.2183 -1.7232 19 6 -1.2082 5.6976 -2.6482 20 6 -1.3590 5.0113 -3.8438 21 6 -2.3406 5.4924 -4.8811 22 6 -0.5978 3.8809 -4.0720 23 7 0.2654 3.4555 -3.1701 24 1 -0.3633 0.5850 -0.8449 25 1 -0.3633 -1.0241 -0.0841 26 1 -0.3634 0.4393 0.9291 27 1 1.8932 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.9009 -0.0857 2.8923 30 1 2.2820 1.9410 -1.9827 31 1 2.6222 5.3439 -1.0423 32 1 3.4859 3.8921 -0.4808 33 1 3.1366 4.1061 -2.2131 34 1 -0.1494 5.7282 -0.7822 35 1 -1.7888 6.5849 -2.4430 36 1 -1.8435 6.1884 -5.5567 37 1 -2.7161 4.6409 -5.4485 38 1 -3.1725 5.9958 -4.3883 39 1 -0.7096 3.3406 -5.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:12 Heat of formation + Delta-G solvation = 19.041395 kcal Electronic energy + Delta-G solvation = -18170.265221 eV Core-core repulsion = 15498.099571 eV Total energy + Delta-G solvation = -2672.165650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03558 -36.67329 -34.01935 -32.57671 -31.70097 -31.09296 -28.49514 -26.76374 -25.94073 -23.51771 -22.81421 -22.14720 -20.29485 -19.41514 -16.66902 -16.25496 -15.89257 -14.94735 -14.75413 -14.28139 -13.77073 -13.69971 -13.19542 -12.91839 -12.78007 -12.63337 -12.46222 -12.29694 -11.80756 -11.75091 -11.30058 -11.10730 -11.04001 -10.78169 -10.65746 -10.51012 -10.07406 -9.55038 -9.51708 -9.45856 -9.01765 -8.87115 -8.43947 -8.32960 -7.12863 -5.95311 -4.07555 1.37545 1.56638 3.30148 3.35634 3.38192 4.08454 4.42218 4.67392 4.87101 4.93245 5.04583 5.18268 5.28914 5.48945 5.53024 5.63132 5.71600 5.84640 5.92397 5.99371 6.08116 6.20166 6.40456 6.46015 6.51354 6.57745 6.62486 6.81499 6.86647 7.04841 7.20008 7.27870 7.53860 7.65743 7.83654 8.15948 8.23583 8.35734 8.51285 8.77523 9.07519 9.59374 11.04562 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033083 B = 0.005436 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.142739 B = 5149.443086 C = 5588.748572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.215 3.785 4 H 0.029 0.971 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.669 5.669 14 C 0.138 3.862 15 H 0.085 0.915 16 C -0.172 4.172 17 C 0.154 3.846 18 C -0.174 4.174 19 C -0.080 4.080 20 C -0.162 4.162 21 C -0.104 4.104 22 C 0.097 3.903 23 N -0.451 5.451 24 H 0.051 0.949 25 H 0.023 0.977 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.337 0.663 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 9.691 -8.947 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C 0.107 3.893 4 H 0.047 0.953 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.298 5.298 14 C 0.026 3.974 15 H 0.103 0.897 16 C -0.231 4.231 17 C 0.016 3.984 18 C -0.194 4.194 19 C -0.106 4.106 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.061 4.061 23 N -0.159 5.159 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.719 8.661 -8.836 15.136 hybrid contribution 1.447 1.081 0.407 1.851 sum -7.272 9.742 -8.429 14.793 Atomic orbital electron populations 1.21709 0.99206 0.98373 1.00257 1.21474 0.91929 0.99296 1.01538 1.19212 0.92603 0.91260 0.86237 0.95319 1.21881 0.92599 1.37610 1.05952 0.92578 1.24934 0.97774 0.95058 0.95736 1.69874 1.34940 1.37884 1.09662 0.86754 0.86343 0.78121 0.77318 1.20448 1.21349 1.20325 1.60725 1.53152 1.05772 1.10120 1.20331 0.91572 0.90773 0.94697 0.89742 1.22534 0.98725 0.99240 1.02633 1.21692 0.94283 0.90088 0.92363 1.21936 0.98219 0.98432 1.00839 1.21335 0.97221 0.98938 0.93083 1.20838 1.00575 0.98109 0.96863 1.20643 0.97140 1.01325 0.97034 1.22705 0.92010 0.93296 0.98080 1.67581 1.16856 1.29857 1.01574 0.92999 0.95832 0.94846 0.89375 0.95058 0.92915 0.84546 0.93963 0.89601 0.93196 0.85236 0.85590 0.91485 0.91509 0.91839 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.85 37.16 0.37 -2.61 16 2 C -0.10 -2.54 5.44 -26.73 -0.15 -2.68 16 3 C 0.21 5.27 2.01 -68.86 -0.14 5.13 16 4 H 0.03 0.78 7.32 -51.93 -0.38 0.40 16 5 C -0.54 -14.21 7.15 -34.44 -0.25 -14.46 16 6 H 0.06 1.46 6.95 -52.49 -0.36 1.09 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 8 N -0.89 -24.81 11.30 55.43 0.63 -24.18 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -14.35 4.91 -102.17 -0.50 -14.85 16 14 C 0.14 2.62 2.84 -68.87 -0.20 2.42 16 15 H 0.08 1.64 7.32 -51.93 -0.38 1.26 16 16 C -0.17 -3.08 8.83 37.16 0.33 -2.75 16 17 C 0.15 2.66 5.89 -82.59 -0.49 2.17 16 18 C -0.17 -2.50 9.77 -39.44 -0.39 -2.89 16 19 C -0.08 -0.99 9.86 -39.28 -0.39 -1.38 16 20 C -0.16 -1.98 5.90 -104.48 -0.62 -2.60 16 21 C -0.10 -0.89 10.04 36.01 0.36 -0.53 16 22 C 0.10 1.39 10.86 -17.55 -0.19 1.19 16 23 N -0.45 -7.90 9.74 -9.47 -0.09 -7.99 16 24 H 0.05 1.12 7.58 -51.93 -0.39 0.72 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.38 5.99 -51.93 -0.31 2.07 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.34 7.45 8.01 -39.29 -0.31 7.13 16 31 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.09 1.73 6.27 -51.93 -0.33 1.41 16 33 H 0.05 0.89 8.13 -51.93 -0.42 0.46 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 39 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -28.32 317.47 -8.28 -36.61 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.25 Total: 6.96 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.83 Total: -17.26 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.03 Total: -47.02 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.32 -8.28 -36.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.646 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds