Wall clock time and date at job start Mon Mar 30 2020 18:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47233 * 2 1 4 4 H 1.09003 * 109.46923 * 305.70002 * 3 2 1 5 5 C 1.50705 * 109.47105 * 185.70588 * 3 2 1 6 6 H 1.07992 * 119.99825 * 242.87017 * 5 3 2 7 7 C 1.37880 * 119.99919 * 62.86744 * 5 3 2 8 8 N 1.31513 * 120.00031 * 194.41920 * 7 5 3 9 9 Si 1.86795 * 120.00163 * 14.42232 * 7 5 3 10 10 H 1.48497 * 109.47460 * 90.10194 * 9 7 5 11 11 H 1.48499 * 109.47469 * 210.10793 * 9 7 5 12 12 H 1.48504 * 109.47270 * 330.10366 * 9 7 5 13 13 N 1.46899 * 109.47567 * 65.70140 * 3 2 1 14 14 C 1.46898 * 111.00089 * 199.40810 * 13 3 2 15 15 H 1.08997 * 109.47192 * 338.99942 * 14 13 3 16 16 C 1.52998 * 109.47154 * 99.00253 * 14 13 3 17 17 C 1.52997 * 109.47256 * 294.69719 * 16 14 13 18 18 C 1.50699 * 109.46887 * 219.00426 * 14 13 3 19 19 C 1.38651 * 120.79209 * 140.00319 * 18 14 13 20 20 C 1.38204 * 119.16391 * 179.74413 * 19 18 14 21 21 N 1.31868 * 120.76362 * 0.25275 * 20 19 18 22 22 C 1.31866 * 121.72566 * 0.02562 * 21 20 19 23 23 C 1.38202 * 120.76825 * 359.97435 * 22 21 20 24 24 H 1.08992 * 109.47206 * 304.10311 * 1 2 3 25 25 H 1.09004 * 109.46949 * 64.10279 * 1 2 3 26 26 H 1.08997 * 109.47112 * 184.09524 * 1 2 3 27 27 H 1.09001 * 109.46957 * 239.99256 * 2 1 3 28 28 H 1.09003 * 109.46477 * 119.99927 * 2 1 3 29 29 H 0.96997 * 120.00406 * 179.97438 * 8 7 5 30 30 H 1.00896 * 110.99645 * 323.36522 * 13 3 2 31 31 H 1.09004 * 109.47040 * 54.69079 * 16 14 13 32 32 H 1.08997 * 109.46917 * 174.68828 * 16 14 13 33 33 H 1.09001 * 109.46980 * 304.68166 * 17 16 14 34 34 H 1.08994 * 109.47606 * 64.67967 * 17 16 14 35 35 H 1.08998 * 109.47080 * 184.68879 * 17 16 14 36 36 H 1.08001 * 120.41712 * 0.02562 * 19 18 14 37 37 H 1.07995 * 119.61454 * 180.26955 * 20 19 18 38 38 H 1.08000 * 119.61793 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.42242 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5957 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1413 6 1 4.1567 1.8443 0.6505 7 6 4.1263 0.9368 -1.2814 8 7 5.4149 0.6745 -1.2976 9 14 3.0898 0.6211 -2.8029 10 1 3.0764 1.8379 -3.6540 11 1 3.6673 -0.5124 -3.5690 12 1 1.7014 0.2867 -2.3955 13 7 1.6660 2.0942 1.2623 14 6 1.7142 3.5568 1.1341 15 1 2.3526 3.8269 0.2929 16 6 0.3018 4.0946 0.8958 17 6 -0.2138 3.5933 -0.4546 18 6 2.2722 4.1538 2.4002 19 6 3.1546 5.2222 2.3523 20 6 3.6416 5.7470 3.5345 21 7 3.2800 5.2403 4.6969 22 6 2.4473 4.2212 4.7803 23 6 1.9196 3.6443 3.6406 24 1 -0.3633 0.5761 0.8509 25 1 -0.3633 0.4489 -0.9245 26 1 -0.3633 -1.0250 0.0734 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 5.8271 0.3168 -2.0994 30 1 0.7556 1.7880 1.5713 31 1 -0.3588 3.7451 1.6893 32 1 0.3235 5.1844 0.8947 33 1 0.4906 3.8718 -1.2386 34 1 -0.3143 2.5084 -0.4252 35 1 -1.1848 4.0428 -0.6624 36 1 3.4541 5.6419 1.4033 37 1 4.3259 6.5820 3.5058 38 1 2.1738 3.8333 5.7504 39 1 1.2378 2.8101 3.7154 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155363.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:19 Heat of formation + Delta-G solvation = 27.915133 kcal Electronic energy + Delta-G solvation = -18660.873697 eV Core-core repulsion = 15989.092841 eV Total energy + Delta-G solvation = -2671.780856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.88014 -37.60513 -34.36742 -32.07700 -31.61086 -30.84978 -30.17649 -27.22391 -25.48125 -23.10021 -22.61902 -22.37554 -20.21841 -19.71535 -16.86373 -16.43707 -16.01643 -15.21185 -14.95667 -14.84613 -14.14832 -13.67055 -13.55294 -13.46142 -13.28181 -12.89448 -12.40350 -12.24492 -11.95511 -11.79112 -11.40876 -11.36568 -11.13334 -10.89745 -10.61557 -10.50305 -10.25734 -9.99193 -9.46793 -9.26015 -9.12594 -8.97869 -8.76616 -8.51055 -7.42664 -6.08379 -4.01527 1.52582 1.68986 3.23393 3.32666 3.35317 4.18326 4.39559 4.76076 4.79321 5.05378 5.18589 5.22892 5.29278 5.37398 5.55007 5.58807 5.68076 5.76674 5.82998 5.95156 5.97251 5.98254 6.02400 6.11108 6.14959 6.28845 6.43794 6.45861 6.52585 6.63569 6.72455 6.79785 6.96366 7.09079 7.21706 7.73788 7.93290 8.18421 8.30545 8.72675 9.07965 9.57367 11.05016 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.007589 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.904535 B = 3688.722279 C = 4206.087021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.130 4.130 3 C 0.193 3.807 4 H 0.002 0.998 5 C -0.503 4.503 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.855 3.145 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.666 5.666 14 C 0.124 3.876 15 H 0.096 0.904 16 C -0.140 4.140 17 C -0.159 4.159 18 C -0.005 4.005 19 C -0.168 4.168 20 C 0.090 3.910 21 N -0.499 5.499 22 C 0.086 3.914 23 C -0.147 4.147 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.262 0.738 30 H 0.320 0.680 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 6.148 4.668 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C 0.085 3.915 4 H 0.020 0.980 5 C -0.541 4.541 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.531 5.531 9 Si 0.682 3.318 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.297 5.297 14 C 0.014 3.986 15 H 0.114 0.886 16 C -0.179 4.179 17 C -0.217 4.217 18 C -0.014 4.014 19 C -0.189 4.189 20 C -0.067 4.067 21 N -0.208 5.208 22 C -0.071 4.071 23 C -0.167 4.167 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.779 6.363 5.578 12.932 hybrid contribution -1.396 -0.526 -2.311 2.751 sum -11.175 5.837 3.267 13.024 Atomic orbital electron populations 1.21956 0.98700 1.00364 1.00343 1.22147 0.92395 1.00132 1.02195 1.19612 0.96642 0.89594 0.85690 0.98031 1.20972 0.89178 1.40228 1.03691 0.90444 1.24912 0.94677 0.94880 0.98507 1.69967 1.10968 1.43732 1.28436 0.87400 0.82268 0.77991 0.84113 1.20885 1.21484 1.17427 1.60502 1.32332 1.02880 1.33952 1.20500 0.94600 0.89445 0.94095 0.88606 1.22163 0.96984 1.00947 0.97810 1.21955 1.00399 1.02119 0.97195 1.20426 0.93026 0.92324 0.95663 1.22031 0.98796 0.98099 0.99931 1.22577 0.97727 0.98646 0.87735 1.67580 1.12816 1.11540 1.28907 1.22632 0.93559 0.92463 0.98411 1.21885 1.01729 1.00418 0.92636 0.93418 0.93703 0.93749 0.91902 0.91869 0.92799 0.86097 0.92040 0.91951 0.92321 0.91785 0.93180 0.85187 0.83406 0.83501 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 8.75 37.16 0.33 -2.19 16 2 C -0.13 -2.65 4.78 -26.73 -0.13 -2.78 16 3 C 0.19 4.17 0.79 -68.86 -0.05 4.12 16 4 H 0.00 0.05 4.71 -51.93 -0.24 -0.20 16 5 C -0.50 -13.59 8.76 -34.44 -0.30 -13.89 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.02 5.34 -17.82 -0.10 1.92 16 8 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 9 Si 0.85 20.41 25.77 -169.99 -4.38 16.03 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.25 -5.49 5.33 56.52 0.30 -5.19 16 13 N -0.67 -12.39 5.19 -102.17 -0.53 -12.92 16 14 C 0.12 2.10 2.23 -68.87 -0.15 1.95 16 15 H 0.10 1.86 7.26 -51.93 -0.38 1.49 16 16 C -0.14 -1.91 5.25 -26.73 -0.14 -2.06 16 17 C -0.16 -2.21 8.58 37.16 0.32 -1.89 16 18 C -0.01 -0.09 4.98 -104.32 -0.52 -0.61 16 19 C -0.17 -2.63 9.78 -39.44 -0.39 -3.02 16 20 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 21 N -0.50 -8.03 10.36 -13.26 -0.14 -8.16 16 22 C 0.09 1.27 11.18 -17.55 -0.20 1.07 16 23 C -0.15 -2.24 9.43 -39.44 -0.37 -2.61 16 24 H 0.05 0.68 6.24 -51.93 -0.32 0.36 16 25 H 0.04 0.71 7.49 -51.93 -0.39 0.32 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.38 4.57 -51.93 -0.24 1.14 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.32 5.23 5.91 -39.29 -0.23 5.00 16 31 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 34 H 0.06 0.94 4.80 -51.93 -0.25 0.69 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 1.83 7.79 -52.49 -0.41 1.42 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -30.21 303.69 -7.51 -37.72 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.91 Total: 7.73 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.90 Total: -18.82 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.11 Total: -47.23 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.38 Total: 16.03 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.21 -7.51 -37.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155363.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.634 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds