Wall clock time and date at job start Mon Mar 30 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46640 * 2 1 4 4 H 1.08993 * 109.47107 * 56.09395 * 3 2 1 5 5 C 1.50703 * 109.46556 * 176.08876 * 3 2 1 6 6 H 1.08000 * 120.00425 * 115.94818 * 5 3 2 7 7 C 1.37880 * 120.00256 * 295.94492 * 5 3 2 8 8 N 1.31519 * 120.00001 * 351.88663 * 7 5 3 9 9 Si 1.86799 * 120.00094 * 171.88466 * 7 5 3 10 10 H 1.48507 * 109.47109 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.47071 * 300.00012 * 9 7 5 12 12 H 1.48496 * 109.47303 * 60.00357 * 9 7 5 13 13 N 1.46893 * 109.47396 * 296.08392 * 3 2 1 14 14 C 1.46901 * 110.99875 * 158.18801 * 13 3 2 15 15 H 1.09001 * 109.47298 * 358.63046 * 14 13 3 16 16 C 1.53004 * 109.47135 * 238.62913 * 14 13 3 17 17 C 1.53005 * 109.47075 * 65.30499 * 16 14 13 18 18 C 1.50700 * 109.46893 * 118.63086 * 14 13 3 19 19 C 1.38643 * 120.79085 * 39.72056 * 18 14 13 20 20 C 1.38210 * 119.16345 * 179.75622 * 19 18 14 21 21 N 1.31868 * 120.76192 * 0.52638 * 20 19 18 22 22 C 1.31875 * 121.72817 * 359.74626 * 21 20 19 23 23 C 1.38209 * 120.76223 * 359.97358 * 22 21 20 24 24 H 1.09002 * 109.47353 * 306.35031 * 1 2 3 25 25 H 1.09008 * 109.47001 * 66.34735 * 1 2 3 26 26 H 1.09004 * 109.46977 * 186.34398 * 1 2 3 27 27 H 1.08997 * 109.47403 * 240.00298 * 2 1 3 28 28 H 1.08998 * 109.46841 * 120.00072 * 2 1 3 29 29 H 0.97004 * 119.99383 * 355.03857 * 8 7 5 30 30 H 1.00903 * 110.99871 * 34.23996 * 13 3 2 31 31 H 1.08996 * 109.47183 * 185.30673 * 16 14 13 32 32 H 1.09003 * 109.47171 * 305.30628 * 16 14 13 33 33 H 1.09000 * 109.46785 * 176.75418 * 17 16 14 34 34 H 1.08989 * 109.47011 * 296.76046 * 17 16 14 35 35 H 1.09004 * 109.46559 * 56.76033 * 17 16 14 36 36 H 1.08005 * 120.42100 * 0.02562 * 19 18 14 37 37 H 1.07999 * 119.62196 * 180.29831 * 20 19 18 38 38 H 1.07999 * 119.62217 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.41935 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6205 1.9761 0.8529 5 6 3.5438 1.4436 0.0969 6 1 4.1371 1.8340 -0.7167 7 6 4.1624 0.9463 1.2243 8 7 3.4457 0.6194 2.2776 9 14 6.0183 0.7367 1.2559 10 1 6.4322 0.1880 2.5723 11 1 6.4291 -0.1994 0.1788 12 1 6.6690 2.0542 1.0415 13 7 1.6290 2.1072 -1.2438 14 6 1.6262 3.5675 -1.0843 15 1 1.9092 3.8220 -0.0629 16 6 0.2254 4.1097 -1.3756 17 6 -0.7519 3.5918 -0.3184 18 6 2.6118 4.1797 -2.0460 19 6 2.7420 3.6901 -3.3365 20 6 3.6529 4.2802 -4.1921 21 7 4.3998 5.2898 -3.7900 22 6 4.3069 5.7778 -2.5684 23 6 3.4142 5.2424 -1.6593 24 1 -0.3634 0.6091 0.8277 25 1 -0.3633 0.4123 -0.9414 26 1 -0.3633 -1.0214 0.1136 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.4918 0.7949 2.2885 30 1 0.7267 1.7752 -1.5501 31 1 0.2449 5.1992 -1.3497 32 1 -0.0957 3.7754 -2.3621 33 1 -1.7375 4.0239 -0.4922 34 1 -0.8148 2.5056 -0.3829 35 1 -0.3997 3.8773 0.6728 36 1 2.1360 2.8607 -3.6705 37 1 3.7569 3.9078 -5.2005 38 1 4.9357 6.6054 -2.2749 39 1 3.3424 5.6466 -0.6604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155364.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:21 Heat of formation + Delta-G solvation = 16.508079 kcal Electronic energy + Delta-G solvation = -18694.288885 eV Core-core repulsion = 16022.013382 eV Total energy + Delta-G solvation = -2672.275503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80702 -37.46165 -34.57919 -31.94374 -31.53465 -30.77481 -30.11886 -26.42971 -25.13158 -23.08792 -22.91603 -22.36481 -20.22103 -19.79210 -16.86038 -16.33457 -15.81249 -15.27844 -15.11280 -14.54408 -13.87704 -13.71798 -13.49469 -13.34993 -13.22757 -12.76927 -12.48705 -12.10472 -11.99612 -11.40252 -11.31427 -11.24768 -11.05421 -10.73836 -10.63783 -10.50530 -10.07474 -9.95944 -9.94031 -9.09082 -8.95076 -8.70827 -8.68747 -8.36037 -7.40584 -6.30194 -4.01171 1.58927 1.76041 3.46192 3.47647 3.65975 4.24252 4.54262 4.80981 4.83497 5.07499 5.23115 5.29560 5.33831 5.39303 5.57879 5.65849 5.69857 5.84650 5.89151 5.93058 5.96726 6.04536 6.09941 6.11587 6.17393 6.28692 6.42310 6.51638 6.58741 6.75297 6.86149 6.87908 7.14681 7.15686 7.35875 7.98656 8.06405 8.36065 8.42863 8.67971 8.93105 9.67236 11.04187 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.009656 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.118018 B = 2899.166480 C = 4142.210487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C 0.212 3.788 4 H -0.007 1.007 5 C -0.573 4.573 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 1.061 2.939 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.671 5.671 14 C 0.128 3.872 15 H 0.076 0.924 16 C -0.133 4.133 17 C -0.156 4.156 18 C -0.002 4.002 19 C -0.140 4.140 20 C 0.083 3.917 21 N -0.499 5.499 22 C 0.088 3.912 23 C -0.169 4.169 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.268 0.732 30 H 0.321 0.679 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 6.409 -7.210 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C 0.104 3.896 4 H 0.011 0.989 5 C -0.612 4.612 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.890 3.110 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.303 5.303 14 C 0.017 3.983 15 H 0.094 0.906 16 C -0.172 4.172 17 C -0.214 4.214 18 C -0.011 4.011 19 C -0.160 4.160 20 C -0.073 4.073 21 N -0.209 5.209 22 C -0.069 4.069 23 C -0.190 4.190 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.729 6.177 -7.123 10.138 hybrid contribution -2.537 0.206 0.268 2.559 sum -6.266 6.383 -6.855 11.269 Atomic orbital electron populations 1.21938 0.98969 1.00209 0.99955 1.21808 0.91895 1.00570 1.02345 1.19356 0.96201 0.89253 0.84763 0.98922 1.21928 0.90646 1.44217 1.04389 0.92827 1.25680 1.06428 0.94055 0.92277 1.70815 1.09060 1.45459 1.29912 0.83659 0.75006 0.76519 0.75854 1.20963 1.21503 1.21637 1.60560 1.32350 1.01769 1.35620 1.20431 0.91086 0.89811 0.96945 0.90580 1.21992 0.95020 1.00787 0.99392 1.21865 0.98518 1.01788 0.99191 1.20403 0.94453 0.92046 0.94213 1.21894 0.99916 1.00102 0.94071 1.22635 0.92506 0.92539 0.99653 1.67567 1.23664 1.12045 1.17586 1.22541 0.96457 0.98718 0.89192 1.22002 0.97857 0.98226 1.00886 0.93712 0.93903 0.93960 0.92860 0.90904 0.92096 0.86021 0.91854 0.91673 0.92872 0.92170 0.92585 0.84892 0.83577 0.83533 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.81 37.16 0.33 -2.34 16 2 C -0.13 -2.79 5.26 -26.73 -0.14 -2.93 16 3 C 0.21 4.92 1.50 -68.87 -0.10 4.81 16 4 H -0.01 -0.17 6.94 -51.93 -0.36 -0.53 16 5 C -0.57 -15.54 8.57 -34.44 -0.30 -15.84 16 6 H 0.05 1.54 7.83 -52.49 -0.41 1.13 16 7 C 0.02 0.53 5.19 -17.82 -0.09 0.44 16 8 N -0.92 -26.62 12.79 55.43 0.71 -25.91 16 9 Si 1.06 25.47 29.91 -169.99 -5.08 20.39 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.67 -13.02 5.36 -102.17 -0.55 -13.57 16 14 C 0.13 2.25 2.21 -68.86 -0.15 2.10 16 15 H 0.08 1.54 7.16 -51.93 -0.37 1.16 16 16 C -0.13 -1.86 5.21 -26.73 -0.14 -2.00 16 17 C -0.16 -2.09 9.74 37.16 0.36 -1.73 16 18 C 0.00 -0.04 4.98 -104.32 -0.52 -0.56 16 19 C -0.14 -2.31 9.43 -39.44 -0.37 -2.68 16 20 C 0.08 1.32 11.18 -17.55 -0.20 1.12 16 21 N -0.50 -8.46 10.36 -13.25 -0.14 -8.60 16 22 C 0.09 1.39 11.18 -17.54 -0.20 1.20 16 23 C -0.17 -2.81 9.78 -39.44 -0.39 -3.20 16 24 H 0.04 0.77 7.92 -51.93 -0.41 0.36 16 25 H 0.04 0.66 6.16 -51.92 -0.32 0.34 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.80 6.29 -51.93 -0.33 1.47 16 29 H 0.27 7.70 6.25 -40.82 -0.25 7.45 16 30 H 0.32 5.58 4.91 -39.29 -0.19 5.39 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.84 5.59 -51.93 -0.29 0.55 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.13 2.08 7.79 -52.48 -0.41 1.67 16 37 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -29.71 312.63 -8.20 -37.91 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.95 Total: 6.68 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -1.90 Total: -21.61 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.02 Total: -48.08 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.71 -8.20 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155364.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.416 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds