Wall clock time and date at job start Mon Mar 30 2020 18:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47261 * 2 1 4 4 H 1.09001 * 109.46790 * 306.05636 * 3 2 1 5 5 C 1.50699 * 109.47241 * 186.05309 * 3 2 1 6 6 H 1.08003 * 119.99965 * 244.06612 * 5 3 2 7 7 C 1.37877 * 119.99686 * 64.06263 * 5 3 2 8 8 N 1.31513 * 119.99805 * 198.72046 * 7 5 3 9 9 Si 1.86791 * 120.00259 * 18.71861 * 7 5 3 10 10 H 1.48507 * 109.47228 * 87.75094 * 9 7 5 11 11 H 1.48500 * 109.47435 * 207.75046 * 9 7 5 12 12 H 1.48503 * 109.47273 * 327.75122 * 9 7 5 13 13 N 1.46908 * 109.47156 * 66.05256 * 3 2 1 14 14 C 1.46902 * 111.00039 * 220.35250 * 13 3 2 15 15 C 1.53002 * 109.46947 * 65.19892 * 14 13 3 16 16 C 1.52997 * 109.46770 * 305.19759 * 14 13 3 17 17 C 1.50699 * 109.46843 * 185.20172 * 14 13 3 18 18 C 1.38228 * 119.61542 * 180.02562 * 17 14 13 19 19 C 1.38623 * 119.15831 * 180.02562 * 18 17 14 20 20 C 1.38670 * 118.42508 * 359.97438 * 19 18 17 21 21 C 1.38179 * 119.16213 * 0.27672 * 20 19 18 22 22 N 1.31858 * 119.61864 * 0.02562 * 17 14 13 23 23 H 1.09002 * 109.46988 * 303.09389 * 1 2 3 24 24 H 1.08995 * 109.47113 * 63.09258 * 1 2 3 25 25 H 1.08996 * 109.46819 * 183.09568 * 1 2 3 26 26 H 1.08998 * 109.46892 * 239.99953 * 2 1 3 27 27 H 1.09005 * 109.46990 * 119.99746 * 2 1 3 28 28 H 0.97003 * 120.00472 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99509 * 344.30685 * 13 3 2 30 30 H 1.08998 * 109.46935 * 174.05279 * 15 14 13 31 31 H 1.08994 * 109.46757 * 294.05027 * 15 14 13 32 32 H 1.08992 * 109.47198 * 54.05385 * 15 14 13 33 33 H 1.08991 * 109.47437 * 304.16866 * 16 14 13 34 34 H 1.08997 * 109.47185 * 64.17170 * 16 14 13 35 35 H 1.09001 * 109.46724 * 184.16263 * 16 14 13 36 36 H 1.07995 * 120.41831 * 0.03555 * 18 17 14 37 37 H 1.08004 * 120.78789 * 180.02562 * 19 18 17 38 38 H 1.07998 * 120.41987 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.62259 * 179.70782 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5909 1.9866 -0.8308 5 6 3.5396 1.4451 -0.1498 6 1 4.1613 1.8253 0.6473 7 6 4.1179 0.9621 -1.3045 8 7 5.3871 0.6179 -1.3101 9 14 3.0985 0.7965 -2.8610 10 1 3.1360 2.0749 -3.6157 11 1 3.6549 -0.2923 -3.7037 12 1 1.6940 0.4752 -2.5011 13 7 1.6733 2.0916 1.2658 14 6 1.2385 3.4766 1.0406 15 6 -0.0538 3.4786 0.2216 16 6 2.3268 4.2351 0.2782 17 6 0.9937 4.1482 2.3673 18 6 0.5740 5.4648 2.3993 19 6 0.3521 6.0734 3.6248 20 6 0.5610 5.3316 4.7776 21 6 0.9860 4.0214 4.6674 22 7 1.1823 3.4730 3.4841 23 1 -0.3633 0.5611 0.8610 24 1 -0.3633 0.4650 -0.9164 25 1 -0.3633 -1.0261 0.0555 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 5.7940 0.2777 -2.1223 29 1 0.9628 1.5637 1.7502 30 1 -0.4333 4.4975 0.1442 31 1 0.1479 3.0893 -0.7763 32 1 -0.7966 2.8506 0.7134 33 1 3.2666 4.1705 0.8264 34 1 2.4520 3.7943 -0.7107 35 1 2.0369 5.2808 0.1758 36 1 0.4207 6.0123 1.4811 37 1 0.0235 7.1007 3.6805 38 1 0.3976 5.7735 5.7494 39 1 1.1557 3.4383 5.5606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:35 Heat of formation + Delta-G solvation = 40.485434 kcal Electronic energy + Delta-G solvation = -18842.458674 eV Core-core repulsion = 16171.222907 eV Total energy + Delta-G solvation = -2671.235767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18252 -37.56078 -34.07018 -32.24868 -31.91551 -30.34953 -28.69964 -27.22310 -26.35638 -23.59888 -23.13705 -22.39903 -20.20344 -18.73254 -16.92906 -16.50341 -16.11319 -15.37223 -14.59756 -14.39797 -14.06176 -13.85042 -13.35049 -13.23584 -12.89723 -12.68578 -12.39545 -12.21380 -11.85076 -11.66934 -11.52663 -11.15715 -10.86555 -10.75280 -10.70811 -10.37856 -10.11599 -9.78292 -9.66602 -9.50915 -9.16293 -8.98615 -8.72797 -8.31830 -7.12675 -5.98372 -3.85816 1.31871 1.50269 3.31193 3.40872 3.42933 4.04967 4.50190 4.52402 4.75853 4.96922 5.15391 5.23736 5.29425 5.40410 5.50027 5.59898 5.75270 5.85161 5.90008 5.93025 6.00365 6.08169 6.14694 6.27525 6.30397 6.35677 6.41674 6.58178 6.60691 6.79096 6.82750 6.93567 7.04923 7.14159 7.32344 7.91254 8.08992 8.35235 8.51280 8.89789 9.23853 9.70810 11.15276 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029899 B = 0.006803 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.257140 B = 4114.552315 C = 4257.573378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C 0.191 3.809 4 H 0.007 0.993 5 C -0.490 4.490 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.893 5.893 9 Si 0.851 3.149 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.257 1.257 13 N -0.647 5.647 14 C 0.163 3.837 15 C -0.178 4.178 16 C -0.126 4.126 17 C 0.158 3.842 18 C -0.174 4.174 19 C -0.080 4.080 20 C -0.191 4.191 21 C 0.096 3.904 22 N -0.452 5.452 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 8.750 6.875 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.083 3.917 4 H 0.025 0.975 5 C -0.528 4.528 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.531 5.531 9 Si 0.678 3.322 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.181 1.181 13 N -0.278 5.278 14 C 0.069 3.931 15 C -0.237 4.237 16 C -0.183 4.183 17 C 0.020 3.980 18 C -0.194 4.194 19 C -0.106 4.106 20 C -0.211 4.211 21 C -0.061 4.061 22 N -0.160 5.160 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.387 7.956 6.880 15.502 hybrid contribution -1.587 0.669 -1.253 2.130 sum -12.974 8.625 5.628 16.565 Atomic orbital electron populations 1.21949 0.98754 1.00196 1.00389 1.22230 0.92320 1.00724 1.02015 1.19618 0.96634 0.88992 0.86502 0.97528 1.21020 0.89313 1.40013 1.02437 0.90238 1.24890 0.94623 0.94929 0.98566 1.70015 1.12607 1.42776 1.27746 0.87393 0.82126 0.77786 0.84909 1.20785 1.21654 1.18150 1.60549 1.44275 0.99496 1.23443 1.19701 0.93326 0.91953 0.88079 1.22667 0.97973 1.01506 1.01570 1.21837 0.98268 0.96731 1.01502 1.21435 0.91751 0.90558 0.94300 1.21908 1.02402 0.96381 0.98695 1.21460 0.97022 0.99683 0.92451 1.22062 1.03434 0.96457 0.99130 1.22847 0.94670 0.92680 0.95898 1.67626 1.12484 1.38270 0.97610 0.93558 0.93849 0.93907 0.92203 0.91965 0.92993 0.85284 0.92773 0.91313 0.93009 0.91207 0.90586 0.94172 0.85156 0.85432 0.85487 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.81 37.16 0.36 -2.37 16 2 C -0.13 -2.90 4.71 -26.73 -0.13 -3.02 16 3 C 0.19 4.37 0.75 -68.86 -0.05 4.32 16 4 H 0.01 0.17 3.70 -51.93 -0.19 -0.03 16 5 C -0.49 -13.53 7.94 -34.44 -0.27 -13.80 16 6 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 7 C 0.07 2.02 5.27 -17.82 -0.09 1.93 16 8 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 9 Si 0.85 20.91 25.86 -169.99 -4.40 16.52 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.26 -5.93 5.68 56.52 0.32 -5.61 16 13 N -0.65 -13.46 5.43 -95.41 -0.52 -13.97 16 14 C 0.16 2.92 0.76 -132.75 -0.10 2.82 16 15 C -0.18 -2.78 8.20 37.16 0.30 -2.47 16 16 C -0.13 -2.36 7.39 37.16 0.27 -2.09 16 17 C 0.16 2.63 5.64 -82.59 -0.47 2.17 16 18 C -0.17 -2.36 8.61 -39.44 -0.34 -2.70 16 19 C -0.08 -0.92 10.18 -39.28 -0.40 -1.32 16 20 C -0.19 -2.18 10.11 -39.44 -0.40 -2.58 16 21 C 0.10 1.32 11.18 -17.55 -0.20 1.13 16 22 N -0.45 -7.79 9.38 -9.47 -0.09 -7.88 16 23 H 0.05 0.76 6.38 -51.93 -0.33 0.43 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.37 5.16 -51.93 -0.27 1.11 16 27 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 29 H 0.33 6.54 6.37 -39.29 -0.25 6.29 16 30 H 0.05 0.71 7.17 -51.93 -0.37 0.34 16 31 H 0.07 1.14 6.50 -51.93 -0.34 0.81 16 32 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.57 6.35 -51.93 -0.33 1.24 16 35 H 0.04 0.62 7.23 -51.93 -0.38 0.24 16 36 H 0.13 1.53 7.03 -52.49 -0.37 1.16 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -30.87 301.96 -7.01 -37.88 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.83 Total: 7.40 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.50 Total: -18.01 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.17 Total: -48.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.40 Total: 16.52 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.87 -7.01 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.369 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds