Wall clock time and date at job start Mon Mar 30 2020 18:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47261 * 2 1 4 4 H 1.09001 * 109.46790 * 306.05636 * 3 2 1 5 5 C 1.50699 * 109.47241 * 186.05309 * 3 2 1 6 6 H 1.08003 * 119.99965 * 244.06612 * 5 3 2 7 7 C 1.37877 * 119.99686 * 64.06263 * 5 3 2 8 8 N 1.31513 * 119.99805 * 198.72046 * 7 5 3 9 9 Si 1.86791 * 120.00259 * 18.71861 * 7 5 3 10 10 H 1.48507 * 109.47228 * 87.75094 * 9 7 5 11 11 H 1.48500 * 109.47435 * 207.75046 * 9 7 5 12 12 H 1.48503 * 109.47273 * 327.75122 * 9 7 5 13 13 N 1.46908 * 109.47156 * 66.05256 * 3 2 1 14 14 C 1.46902 * 111.00039 * 220.35250 * 13 3 2 15 15 C 1.53002 * 109.46947 * 65.19892 * 14 13 3 16 16 C 1.52997 * 109.46770 * 305.19759 * 14 13 3 17 17 C 1.50699 * 109.46843 * 185.20172 * 14 13 3 18 18 C 1.38228 * 119.61542 * 180.02562 * 17 14 13 19 19 C 1.38623 * 119.15831 * 180.02562 * 18 17 14 20 20 C 1.38670 * 118.42508 * 359.97438 * 19 18 17 21 21 C 1.38179 * 119.16213 * 0.27672 * 20 19 18 22 22 N 1.31858 * 119.61864 * 0.02562 * 17 14 13 23 23 H 1.09002 * 109.46988 * 303.09389 * 1 2 3 24 24 H 1.08995 * 109.47113 * 63.09258 * 1 2 3 25 25 H 1.08996 * 109.46819 * 183.09568 * 1 2 3 26 26 H 1.08998 * 109.46892 * 239.99953 * 2 1 3 27 27 H 1.09005 * 109.46990 * 119.99746 * 2 1 3 28 28 H 0.97003 * 120.00472 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99509 * 344.30685 * 13 3 2 30 30 H 1.08998 * 109.46935 * 174.05279 * 15 14 13 31 31 H 1.08994 * 109.46757 * 294.05027 * 15 14 13 32 32 H 1.08992 * 109.47198 * 54.05385 * 15 14 13 33 33 H 1.08991 * 109.47437 * 304.16866 * 16 14 13 34 34 H 1.08997 * 109.47185 * 64.17170 * 16 14 13 35 35 H 1.09001 * 109.46724 * 184.16263 * 16 14 13 36 36 H 1.07995 * 120.41831 * 0.03555 * 18 17 14 37 37 H 1.08004 * 120.78789 * 180.02562 * 19 18 17 38 38 H 1.07998 * 120.41987 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.62259 * 179.70782 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5909 1.9866 -0.8308 5 6 3.5396 1.4451 -0.1498 6 1 4.1613 1.8253 0.6473 7 6 4.1179 0.9621 -1.3045 8 7 5.3871 0.6179 -1.3101 9 14 3.0985 0.7965 -2.8610 10 1 3.1360 2.0749 -3.6157 11 1 3.6549 -0.2923 -3.7037 12 1 1.6940 0.4752 -2.5011 13 7 1.6733 2.0916 1.2658 14 6 1.2385 3.4766 1.0406 15 6 -0.0538 3.4786 0.2216 16 6 2.3268 4.2351 0.2782 17 6 0.9937 4.1482 2.3673 18 6 0.5740 5.4648 2.3993 19 6 0.3521 6.0734 3.6248 20 6 0.5610 5.3316 4.7776 21 6 0.9860 4.0214 4.6674 22 7 1.1823 3.4730 3.4841 23 1 -0.3633 0.5611 0.8610 24 1 -0.3633 0.4650 -0.9164 25 1 -0.3633 -1.0261 0.0555 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 5.7940 0.2777 -2.1223 29 1 0.9628 1.5637 1.7502 30 1 -0.4333 4.4975 0.1442 31 1 0.1479 3.0893 -0.7763 32 1 -0.7966 2.8506 0.7134 33 1 3.2666 4.1705 0.8264 34 1 2.4520 3.7943 -0.7107 35 1 2.0369 5.2808 0.1758 36 1 0.4207 6.0123 1.4811 37 1 0.0235 7.1007 3.6805 38 1 0.3976 5.7735 5.7494 39 1 1.1557 3.4383 5.5606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:34 Heat of formation + Delta-G solvation = 19.189592 kcal Electronic energy + Delta-G solvation = -18843.382131 eV Core-core repulsion = 16171.222907 eV Total energy + Delta-G solvation = -2672.159224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29942 -39.04736 -35.67120 -33.99338 -33.25588 -31.58090 -30.11197 -29.00668 -27.85065 -24.90433 -24.27187 -23.96998 -21.73782 -20.27984 -18.82705 -17.82139 -17.29719 -16.50042 -16.44058 -15.78333 -15.57636 -15.13051 -14.76249 -14.67832 -14.57865 -13.88337 -13.75228 -13.60692 -13.45009 -12.97270 -12.92050 -12.73698 -12.64289 -12.32080 -12.20815 -12.05312 -11.82843 -11.54643 -11.26049 -11.13987 -10.67081 -10.50619 -10.07627 -9.77545 -8.77156 -8.20654 -6.12048 0.30345 0.54309 1.34943 1.37849 1.46876 2.40650 3.00474 3.10381 3.40078 3.47408 4.01946 4.15471 4.20005 4.26358 4.34290 4.39562 4.41122 4.42684 4.52421 4.67849 4.76746 4.82145 4.88889 4.90079 4.95953 5.06832 5.10988 5.18416 5.25422 5.32596 5.38101 5.41288 5.52607 5.58467 5.86520 5.94177 6.23323 6.72197 6.92445 7.06659 7.34279 7.48992 8.97379 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029899 B = 0.006803 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.257140 B = 4114.552315 C = 4257.573378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.201 3.799 4 H 0.014 0.986 5 C -0.486 4.486 6 H 0.023 0.977 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.918 3.082 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.229 1.229 13 N -0.663 5.663 14 C 0.159 3.841 15 C -0.169 4.169 16 C -0.118 4.118 17 C 0.129 3.871 18 C -0.176 4.176 19 C -0.076 4.076 20 C -0.178 4.178 21 C 0.076 3.924 22 N -0.497 5.497 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.958 10.501 7.067 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.092 3.908 4 H 0.031 0.969 5 C -0.524 4.524 6 H 0.041 0.959 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.743 3.257 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.151 1.151 13 N -0.295 5.295 14 C 0.067 3.933 15 C -0.228 4.228 16 C -0.176 4.176 17 C -0.010 4.010 18 C -0.196 4.196 19 C -0.102 4.102 20 C -0.197 4.197 21 C -0.081 4.081 22 N -0.206 5.206 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.153 0.847 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.181 0.819 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.902 9.720 7.089 19.152 hybrid contribution -0.426 0.215 -1.105 1.203 sum -15.327 9.935 5.984 19.221 Atomic orbital electron populations 1.21831 0.94997 1.02015 1.01330 1.22116 0.95645 0.99001 1.00623 1.19358 0.93239 0.90350 0.87878 0.96884 1.21210 0.91785 1.38701 1.00753 0.95868 1.25701 0.95751 0.94801 1.02097 1.70173 1.15007 1.44987 1.28698 0.86291 0.81716 0.77777 0.79952 1.20087 1.21891 1.15141 1.60339 1.45485 1.01180 1.22499 1.19747 0.93882 0.89875 0.89834 1.22551 0.96631 1.03436 1.00223 1.21743 0.97233 0.99094 0.99559 1.21264 0.94331 0.92011 0.93349 1.22108 1.01770 0.95121 1.00601 1.21935 0.95542 1.01249 0.91429 1.22457 1.01021 0.95265 1.00980 1.23240 0.95172 0.94316 0.95331 1.67478 1.14044 1.40135 0.98913 0.92454 0.93006 0.91709 0.93664 0.93442 0.93049 0.84740 0.89927 0.92411 0.92370 0.95140 0.93047 0.90574 0.83298 0.81600 0.81872 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.81 71.99 0.71 -3.99 16 2 C -0.14 -5.78 4.71 30.60 0.14 -5.63 16 3 C 0.20 9.31 0.75 44.17 0.03 9.34 16 4 H 0.01 0.62 3.70 -2.39 -0.01 0.61 16 5 C -0.49 -28.28 7.94 25.60 0.20 -28.08 16 6 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16 7 C 0.01 0.76 5.27 84.65 0.45 1.21 16 8 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 9 Si 0.92 43.87 25.86 68.60 1.77 45.65 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.23 -9.78 5.68 99.48 0.57 -9.22 16 13 N -0.66 -28.13 5.43 -455.77 -2.47 -30.61 16 14 C 0.16 5.64 0.76 2.78 0.00 5.64 16 15 C -0.17 -4.88 8.20 71.98 0.59 -4.29 16 16 C -0.12 -4.53 7.39 71.98 0.53 -3.99 16 17 C 0.13 4.14 5.64 42.55 0.24 4.38 16 18 C -0.18 -4.26 8.61 22.36 0.19 -4.07 16 19 C -0.08 -1.43 10.18 22.46 0.23 -1.20 16 20 C -0.18 -3.43 10.11 22.36 0.23 -3.21 16 21 C 0.08 1.98 11.18 84.67 0.95 2.93 16 22 N -0.50 -16.98 9.38 -183.88 -1.72 -18.71 16 23 H 0.06 1.74 6.38 -2.39 -0.02 1.72 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 2.04 5.16 -2.39 -0.01 2.02 16 27 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.33 13.32 6.37 -89.69 -0.57 12.75 16 30 H 0.08 1.89 7.17 -2.39 -0.02 1.87 16 31 H 0.06 1.78 6.50 -2.39 -0.02 1.77 16 32 H 0.06 1.60 7.90 -2.39 -0.02 1.58 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 2.17 6.35 -2.39 -0.02 2.15 16 35 H 0.08 2.27 7.23 -2.39 -0.02 2.25 16 36 H 0.15 2.92 7.03 -2.91 -0.02 2.90 16 37 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -72.26 301.96 2.69 -69.57 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.33 Total: 25.53 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 4.49 Total: -30.97 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -3.90 Total: -109.78 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.77 Total: 45.65 kcal Total: -72.26 2.69 -69.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.761 kcal (2) G-P(sol) polarization free energy of solvation -72.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds