Wall clock time and date at job start Mon Mar 30 2020 18:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46986 * 2 1 4 4 H 1.09001 * 109.47057 * 55.58243 * 3 2 1 5 5 C 1.50699 * 109.47126 * 175.57984 * 3 2 1 6 6 H 1.07993 * 120.00411 * 120.00305 * 5 3 2 7 7 C 1.37881 * 119.99625 * 299.99972 * 5 3 2 8 8 N 1.31512 * 120.00316 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99839 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47227 * 59.99784 * 9 7 5 11 11 H 1.48497 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46971 * 300.00182 * 9 7 5 13 13 N 1.46897 * 109.47121 * 295.57838 * 3 2 1 14 14 C 1.46904 * 110.99757 * 136.25538 * 13 3 2 15 15 C 1.52995 * 109.47255 * 56.25043 * 14 13 3 16 16 C 1.53002 * 109.47090 * 296.24805 * 14 13 3 17 17 C 1.50704 * 109.46866 * 176.25276 * 14 13 3 18 18 C 1.38230 * 119.61615 * 180.02562 * 17 14 13 19 19 C 1.38629 * 119.16047 * 179.97438 * 18 17 14 20 20 C 1.38666 * 118.41938 * 359.97438 * 19 18 17 21 21 C 1.38183 * 119.16571 * 0.27726 * 20 19 18 22 22 N 1.31853 * 119.62117 * 359.97389 * 17 14 13 23 23 H 1.08998 * 109.47256 * 185.60192 * 1 2 3 24 24 H 1.09001 * 109.47365 * 305.60777 * 1 2 3 25 25 H 1.09002 * 109.46968 * 65.60688 * 1 2 3 26 26 H 1.08994 * 109.47374 * 239.99980 * 2 1 3 27 27 H 1.09003 * 109.47010 * 119.99762 * 2 1 3 28 28 H 0.96998 * 119.99992 * 180.02562 * 8 7 5 29 29 H 1.00894 * 111.00248 * 12.30183 * 13 3 2 30 30 H 1.09001 * 109.46916 * 176.39421 * 15 14 13 31 31 H 1.09002 * 109.47210 * 296.38908 * 15 14 13 32 32 H 1.09000 * 109.47314 * 56.39436 * 15 14 13 33 33 H 1.09001 * 109.46980 * 305.66262 * 16 14 13 34 34 H 1.09002 * 109.46888 * 65.66306 * 16 14 13 35 35 H 1.08996 * 109.47496 * 185.66042 * 16 14 13 36 36 H 1.07995 * 120.41847 * 359.97438 * 18 17 14 37 37 H 1.07998 * 120.79054 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.41841 * 180.02562 * 20 19 18 39 39 H 1.08000 * 119.61841 * 179.70645 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6135 1.9787 0.8478 5 6 3.5430 1.4440 0.1095 6 1 4.1409 1.8912 -0.6708 7 6 4.1548 0.8743 1.2060 8 7 3.4268 0.3293 2.1560 9 14 6.0179 0.8767 1.3421 10 1 6.5124 2.2769 1.3425 11 1 6.4229 0.2079 2.6046 12 1 6.5996 0.1467 0.1871 13 7 1.6395 2.1035 -1.2492 14 6 1.1353 3.4586 -0.9896 15 6 2.1987 4.2635 -0.2398 16 6 -0.1348 3.3762 -0.1404 17 6 0.8215 4.1371 -2.2981 18 6 0.3308 5.4294 -2.2971 19 6 0.0458 6.0446 -3.5063 20 6 0.2666 5.3342 -4.6765 21 6 0.7544 4.0436 -4.5989 22 7 1.0192 3.4917 -3.4307 23 1 -0.3634 -1.0227 0.1003 24 1 -0.3634 0.5983 0.8355 25 1 -0.3633 0.4244 -0.9360 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8573 -0.0711 2.9275 29 1 0.9561 1.5526 -1.7468 30 1 1.8504 5.2873 -0.1035 31 1 2.3792 3.8085 0.7341 32 1 3.1241 4.2682 -0.8158 33 1 -0.8560 2.7203 -0.6281 34 1 0.1114 2.9776 0.8438 35 1 -0.5647 4.3719 -0.0320 36 1 0.1714 5.9530 -1.3662 37 1 -0.3382 7.0536 -3.5362 38 1 0.0562 5.7824 -5.6363 39 1 0.9245 3.4819 -5.5055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157677.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:37 Heat of formation + Delta-G solvation = 34.525091 kcal Electronic energy + Delta-G solvation = -18773.568096 eV Core-core repulsion = 16102.073870 eV Total energy + Delta-G solvation = -2671.494227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13022 -37.36448 -33.92739 -32.21728 -31.66879 -30.18060 -28.54723 -26.89913 -26.01114 -23.59778 -23.10910 -22.52278 -20.00190 -18.67227 -16.74314 -16.09412 -16.05755 -15.28811 -14.60289 -14.24735 -13.95138 -13.70739 -13.33817 -12.99794 -12.85431 -12.56750 -12.15463 -12.08591 -11.60907 -11.44624 -11.11673 -11.01275 -10.82232 -10.68525 -10.60978 -10.43213 -9.77924 -9.64983 -9.61958 -9.45602 -9.04059 -8.94860 -8.68145 -8.23003 -6.99344 -5.86621 -3.88507 1.35164 1.53118 3.40132 3.43946 3.48336 4.08513 4.52185 4.58164 4.86155 4.99510 5.22068 5.30645 5.41231 5.49311 5.60944 5.72682 5.82795 5.92495 6.09393 6.19232 6.21826 6.23110 6.32452 6.37962 6.43516 6.51810 6.54293 6.73886 6.90361 6.96088 7.11051 7.16797 7.30969 7.58680 7.87387 8.05315 8.33327 8.49657 8.63661 8.90254 9.20168 9.75594 11.18403 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.006700 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.769085 B = 4178.184378 C = 4565.448447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.215 3.785 4 H 0.019 0.981 5 C -0.480 4.480 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.900 5.900 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.659 5.659 14 C 0.163 3.837 15 C -0.125 4.125 16 C -0.176 4.176 17 C 0.159 3.841 18 C -0.174 4.174 19 C -0.081 4.081 20 C -0.192 4.192 21 C 0.096 3.904 22 N -0.453 5.453 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.258 0.742 29 H 0.327 0.673 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 8.999 -7.988 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.108 3.892 4 H 0.036 0.964 5 C -0.519 4.519 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.290 5.290 14 C 0.069 3.931 15 C -0.183 4.183 16 C -0.235 4.235 17 C 0.020 3.980 18 C -0.194 4.194 19 C -0.107 4.107 20 C -0.212 4.212 21 C -0.062 4.062 22 N -0.161 5.161 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.187 8.247 -7.943 13.519 hybrid contribution -0.222 0.683 0.376 0.810 sum -7.409 8.929 -7.568 13.853 Atomic orbital electron populations 1.21920 0.99735 0.99526 0.99480 1.21931 0.91128 1.01186 1.03052 1.19271 0.95166 0.89293 0.85474 0.96368 1.21258 0.91328 1.35046 1.04276 0.92128 1.24944 0.97746 0.95974 0.96041 1.69856 1.34631 1.39732 1.09878 0.86675 0.86377 0.78017 0.76954 1.20554 1.21659 1.20482 1.60715 1.43289 1.00404 1.24579 1.19690 0.93038 0.92559 0.87774 1.21824 0.98043 0.96700 1.01764 1.22667 0.97939 1.01123 1.01790 1.21535 0.91447 0.90720 0.94262 1.21928 1.02075 0.96581 0.98853 1.21460 0.97137 0.99591 0.92471 1.22051 1.03406 0.96817 0.98946 1.22842 0.94526 0.92609 0.96211 1.67625 1.13495 1.37409 0.97576 0.94615 0.93868 0.94749 0.94253 0.88269 0.93243 0.85454 0.94293 0.90172 0.91882 0.93150 0.90835 0.93207 0.85159 0.85475 0.85547 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.60 37.16 0.36 -2.57 16 2 C -0.13 -3.17 5.21 -26.73 -0.14 -3.31 16 3 C 0.22 5.21 1.15 -68.87 -0.08 5.13 16 4 H 0.02 0.48 4.94 -51.93 -0.26 0.22 16 5 C -0.48 -13.09 7.85 -34.44 -0.27 -13.36 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -25.40 11.29 55.43 0.63 -24.77 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.66 -14.25 5.43 -95.41 -0.52 -14.77 16 14 C 0.16 3.03 0.76 -132.75 -0.10 2.93 16 15 C -0.13 -2.39 7.58 37.16 0.28 -2.11 16 16 C -0.18 -2.95 8.08 37.16 0.30 -2.65 16 17 C 0.16 2.72 5.64 -82.58 -0.47 2.25 16 18 C -0.17 -2.44 8.62 -39.44 -0.34 -2.78 16 19 C -0.08 -0.95 10.18 -39.28 -0.40 -1.35 16 20 C -0.19 -2.25 10.11 -39.44 -0.40 -2.65 16 21 C 0.10 1.34 11.18 -17.55 -0.20 1.14 16 22 N -0.45 -7.99 9.34 -9.47 -0.09 -8.07 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.62 6.66 -51.93 -0.35 0.28 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.10 2.63 5.96 -51.93 -0.31 2.32 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.95 6.36 -39.29 -0.25 6.70 16 30 H 0.04 0.61 7.25 -51.93 -0.38 0.23 16 31 H 0.08 1.71 6.41 -51.93 -0.33 1.38 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.05 0.83 8.02 -51.93 -0.42 0.41 16 34 H 0.07 1.35 6.47 -51.93 -0.34 1.01 16 35 H 0.05 0.71 7.19 -51.93 -0.37 0.33 16 36 H 0.13 1.60 7.03 -52.49 -0.37 1.23 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -29.13 307.32 -7.79 -36.91 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.87 Total: 7.35 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.55 Total: -17.97 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.02 Total: -47.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.13 -7.79 -36.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157677.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.438 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds