Wall clock time and date at job start Mon Mar 30 2020 18:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46986 * 2 1 4 4 H 1.09001 * 109.47057 * 55.58243 * 3 2 1 5 5 C 1.50699 * 109.47126 * 175.57984 * 3 2 1 6 6 H 1.07993 * 120.00411 * 120.00305 * 5 3 2 7 7 C 1.37881 * 119.99625 * 299.99972 * 5 3 2 8 8 N 1.31512 * 120.00316 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99839 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47227 * 59.99784 * 9 7 5 11 11 H 1.48497 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46971 * 300.00182 * 9 7 5 13 13 N 1.46897 * 109.47121 * 295.57838 * 3 2 1 14 14 C 1.46904 * 110.99757 * 136.25538 * 13 3 2 15 15 C 1.52995 * 109.47255 * 56.25043 * 14 13 3 16 16 C 1.53002 * 109.47090 * 296.24805 * 14 13 3 17 17 C 1.50704 * 109.46866 * 176.25276 * 14 13 3 18 18 C 1.38230 * 119.61615 * 180.02562 * 17 14 13 19 19 C 1.38629 * 119.16047 * 179.97438 * 18 17 14 20 20 C 1.38666 * 118.41938 * 359.97438 * 19 18 17 21 21 C 1.38183 * 119.16571 * 0.27726 * 20 19 18 22 22 N 1.31853 * 119.62117 * 359.97389 * 17 14 13 23 23 H 1.08998 * 109.47256 * 185.60192 * 1 2 3 24 24 H 1.09001 * 109.47365 * 305.60777 * 1 2 3 25 25 H 1.09002 * 109.46968 * 65.60688 * 1 2 3 26 26 H 1.08994 * 109.47374 * 239.99980 * 2 1 3 27 27 H 1.09003 * 109.47010 * 119.99762 * 2 1 3 28 28 H 0.96998 * 119.99992 * 180.02562 * 8 7 5 29 29 H 1.00894 * 111.00248 * 12.30183 * 13 3 2 30 30 H 1.09001 * 109.46916 * 176.39421 * 15 14 13 31 31 H 1.09002 * 109.47210 * 296.38908 * 15 14 13 32 32 H 1.09000 * 109.47314 * 56.39436 * 15 14 13 33 33 H 1.09001 * 109.46980 * 305.66262 * 16 14 13 34 34 H 1.09002 * 109.46888 * 65.66306 * 16 14 13 35 35 H 1.08996 * 109.47496 * 185.66042 * 16 14 13 36 36 H 1.07995 * 120.41847 * 359.97438 * 18 17 14 37 37 H 1.07998 * 120.79054 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.41841 * 180.02562 * 20 19 18 39 39 H 1.08000 * 119.61841 * 179.70645 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6135 1.9787 0.8478 5 6 3.5430 1.4440 0.1095 6 1 4.1409 1.8912 -0.6708 7 6 4.1548 0.8743 1.2060 8 7 3.4268 0.3293 2.1560 9 14 6.0179 0.8767 1.3421 10 1 6.5124 2.2769 1.3425 11 1 6.4229 0.2079 2.6046 12 1 6.5996 0.1467 0.1871 13 7 1.6395 2.1035 -1.2492 14 6 1.1353 3.4586 -0.9896 15 6 2.1987 4.2635 -0.2398 16 6 -0.1348 3.3762 -0.1404 17 6 0.8215 4.1371 -2.2981 18 6 0.3308 5.4294 -2.2971 19 6 0.0458 6.0446 -3.5063 20 6 0.2666 5.3342 -4.6765 21 6 0.7544 4.0436 -4.5989 22 7 1.0192 3.4917 -3.4307 23 1 -0.3634 -1.0227 0.1003 24 1 -0.3634 0.5983 0.8355 25 1 -0.3633 0.4244 -0.9360 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8573 -0.0711 2.9275 29 1 0.9561 1.5526 -1.7468 30 1 1.8504 5.2873 -0.1035 31 1 2.3792 3.8085 0.7341 32 1 3.1241 4.2682 -0.8158 33 1 -0.8560 2.7203 -0.6281 34 1 0.1114 2.9776 0.8438 35 1 -0.5647 4.3719 -0.0320 36 1 0.1714 5.9530 -1.3662 37 1 -0.3382 7.0536 -3.5362 38 1 0.0562 5.7824 -5.6363 39 1 0.9245 3.4819 -5.5055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157677.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:36 Heat of formation + Delta-G solvation = 16.579285 kcal Electronic energy + Delta-G solvation = -18774.346285 eV Core-core repulsion = 16102.073870 eV Total energy + Delta-G solvation = -2672.272415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27542 -38.91499 -35.64927 -33.64652 -33.24410 -31.48737 -30.06043 -28.60541 -27.70772 -25.06187 -24.31561 -24.00185 -21.62787 -20.26730 -18.32362 -17.73622 -17.25167 -16.60665 -16.36432 -15.57650 -15.51171 -15.11048 -14.86596 -14.52240 -14.33065 -13.83589 -13.60898 -13.52314 -13.09492 -12.91504 -12.88576 -12.79900 -12.60688 -12.44828 -12.14733 -12.00420 -11.73602 -11.44587 -11.30733 -10.99433 -10.66344 -10.33383 -10.06750 -9.76566 -8.74097 -7.97662 -6.06850 0.31123 0.54870 1.42197 1.43424 1.50979 2.48252 3.01525 3.25816 3.42819 3.58616 4.05309 4.16533 4.22634 4.31263 4.36636 4.41520 4.51912 4.57708 4.69887 4.72280 4.78918 4.87636 4.91540 4.98756 5.06112 5.11138 5.23887 5.32094 5.35244 5.38780 5.44813 5.55619 5.68973 5.84253 5.94270 5.98141 6.47308 6.75112 7.05437 7.10877 7.35971 7.61231 9.03989 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.006700 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.769085 B = 4178.184378 C = 4565.448447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.000 1.000 5 C -0.493 4.493 6 H 0.041 0.959 7 C 0.011 3.989 8 N -0.920 5.920 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.667 5.667 14 C 0.159 3.841 15 C -0.116 4.116 16 C -0.165 4.165 17 C 0.130 3.870 18 C -0.177 4.177 19 C -0.075 4.075 20 C -0.178 4.178 21 C 0.077 3.923 22 N -0.497 5.497 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.258 0.742 29 H 0.327 0.673 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 10.964 -9.406 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C 0.118 3.882 4 H 0.018 0.982 5 C -0.532 4.532 6 H 0.059 0.941 7 C -0.187 4.187 8 N -0.561 5.561 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.298 5.298 14 C 0.066 3.934 15 C -0.174 4.174 16 C -0.224 4.224 17 C -0.008 4.008 18 C -0.197 4.197 19 C -0.101 4.101 20 C -0.197 4.197 21 C -0.080 4.080 22 N -0.206 5.206 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.165 0.835 37 H 0.184 0.816 38 H 0.182 0.818 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.436 10.221 -9.366 16.228 hybrid contribution 0.147 0.145 0.707 0.736 sum -8.289 10.366 -8.660 15.847 Atomic orbital electron populations 1.21750 0.96480 1.00823 1.00187 1.21769 0.94052 1.00229 1.00870 1.18981 0.93441 0.89673 0.86089 0.98210 1.21456 0.93083 1.34851 1.03811 0.94115 1.25558 1.01431 0.95831 0.95861 1.69971 1.35867 1.40180 1.10116 0.85819 0.82024 0.78014 0.76932 1.20201 1.20960 1.20513 1.60572 1.44205 1.01810 1.23176 1.19726 0.93322 0.90663 0.89665 1.21706 0.97477 0.98658 0.99545 1.22518 0.97140 1.02740 1.00031 1.21259 0.94160 0.92174 0.93193 1.22103 1.01515 0.95340 1.00753 1.21930 0.95732 1.01037 0.91420 1.22461 1.00925 0.95586 1.00752 1.23254 0.94912 0.94158 0.95658 1.67470 1.15091 1.39215 0.98813 0.92824 0.93929 0.93330 0.95431 0.91265 0.93320 0.85424 0.90803 0.93354 0.94493 0.93006 0.93032 0.90277 0.83527 0.81617 0.81805 0.81551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.60 71.98 0.69 -4.58 16 2 C -0.13 -6.34 5.21 30.60 0.16 -6.18 16 3 C 0.23 11.38 1.15 44.17 0.05 11.43 16 4 H 0.00 0.02 4.94 -2.39 -0.01 0.01 16 5 C -0.49 -27.96 7.85 25.60 0.20 -27.76 16 6 H 0.04 2.42 7.81 -2.91 -0.02 2.39 16 7 C 0.01 0.60 5.29 84.66 0.45 1.04 16 8 N -0.92 -53.36 11.29 21.45 0.24 -53.12 16 9 Si 0.95 45.51 29.54 68.60 2.03 47.54 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.67 -29.64 5.43 -455.78 -2.48 -32.12 16 14 C 0.16 5.94 0.76 2.78 0.00 5.94 16 15 C -0.12 -4.50 7.58 71.98 0.55 -3.96 16 16 C -0.16 -5.44 8.08 71.98 0.58 -4.85 16 17 C 0.13 4.31 5.64 42.55 0.24 4.55 16 18 C -0.18 -4.45 8.62 22.36 0.19 -4.25 16 19 C -0.08 -1.46 10.18 22.47 0.23 -1.23 16 20 C -0.18 -3.45 10.11 22.36 0.23 -3.23 16 21 C 0.08 2.00 11.18 84.67 0.95 2.95 16 22 N -0.50 -17.19 9.34 -183.88 -1.72 -18.90 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.74 6.66 -2.39 -0.02 1.73 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 3.79 5.96 -2.39 -0.01 3.78 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.33 14.19 6.36 -89.70 -0.57 13.62 16 30 H 0.07 2.26 7.25 -2.39 -0.02 2.24 16 31 H 0.05 2.15 6.41 -2.39 -0.02 2.13 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.66 8.02 -2.39 -0.02 1.65 16 34 H 0.05 1.91 6.47 -2.39 -0.02 1.89 16 35 H 0.08 2.09 7.19 -2.39 -0.02 2.08 16 36 H 0.15 3.07 7.03 -2.91 -0.02 3.05 16 37 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.17 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -65.63 307.32 3.05 -62.58 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.46 Total: 24.14 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 4.51 Total: -30.12 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -3.95 Total: -104.14 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.63 3.05 -62.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157677.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.157 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds