Wall clock time and date at job start Mon Mar 30 2020 18:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 H 1.08998 * 109.47050 * 179.50851 * 3 2 1 5 5 C 1.50698 * 109.47134 * 299.51034 * 3 2 1 6 6 H 1.07996 * 120.00205 * 120.00325 * 5 3 2 7 7 C 1.37882 * 119.99759 * 300.00269 * 5 3 2 8 8 N 1.31516 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99676 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47601 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47252 * 119.99873 * 9 7 5 12 12 H 1.48507 * 109.46745 * 239.99574 * 9 7 5 13 13 N 1.46895 * 109.47230 * 59.51111 * 3 2 1 14 14 C 1.46901 * 111.00563 * 85.85353 * 13 3 2 15 15 H 1.09000 * 109.46802 * 327.26119 * 14 13 3 16 16 C 1.53004 * 109.46976 * 87.25507 * 14 13 3 17 17 C 1.50690 * 109.47617 * 207.25717 * 14 13 3 18 18 C 1.38305 * 119.96390 * 320.00078 * 17 14 13 19 19 C 1.38265 * 120.15409 * 180.02562 * 18 17 14 20 20 C 1.38132 * 120.07335 * 359.97245 * 19 18 17 21 21 C 1.38889 * 119.92046 * 0.02562 * 20 19 18 22 22 N 1.39677 * 120.07242 * 179.97438 * 21 20 19 23 23 C 1.38087 * 119.96294 * 139.72745 * 17 14 13 24 24 H 1.08995 * 109.47418 * 296.24124 * 1 2 3 25 25 H 1.09003 * 109.46909 * 176.23608 * 1 2 3 26 26 H 1.09007 * 109.46634 * 56.24286 * 1 2 3 27 27 H 1.09009 * 109.46698 * 120.00055 * 2 1 3 28 28 H 1.08997 * 109.47162 * 239.99271 * 2 1 3 29 29 H 0.97000 * 120.00086 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00398 * 209.81174 * 13 3 2 31 31 H 1.08996 * 109.47148 * 180.02562 * 16 14 13 32 32 H 1.09001 * 109.47055 * 300.00575 * 16 14 13 33 33 H 1.09001 * 109.46930 * 60.00096 * 16 14 13 34 34 H 1.08004 * 119.92519 * 359.97438 * 18 17 14 35 35 H 1.07997 * 119.96777 * 180.02562 * 19 18 17 36 36 H 1.07994 * 120.03787 * 180.02562 * 20 19 18 37 37 H 0.97004 * 119.99961 * 0.02562 * 22 21 20 38 38 H 0.97000 * 120.00499 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.03903 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0088 5 6 1.5477 2.1494 -1.2365 6 1 0.9261 3.0277 -1.1449 7 6 1.8908 1.6746 -2.4847 8 7 2.6482 0.6053 -2.5962 9 14 1.2811 2.5513 -4.0173 10 1 0.4528 3.7191 -3.6233 11 1 2.4429 3.0153 -4.8175 12 1 0.4623 1.6159 -4.8298 13 7 1.5408 2.1384 1.1934 14 6 2.4261 1.9124 2.3437 15 1 2.8645 0.9168 2.2746 16 6 3.5400 2.9613 2.3437 17 6 1.6312 2.0238 3.6190 18 6 0.6625 3.0028 3.7459 19 6 -0.0688 3.1090 4.9145 20 6 0.1657 2.2365 5.9595 21 6 1.1377 1.2523 5.8354 22 7 1.3778 0.3687 6.8902 23 6 1.8668 1.1449 4.6576 24 1 -0.3634 0.4544 0.9217 25 1 -0.3633 -1.0255 -0.0675 26 1 -0.3633 0.5711 -0.8545 27 1 1.8933 -0.5139 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 2.8899 0.2715 -3.4743 30 1 1.4246 3.1246 1.0149 31 1 4.1972 2.7933 3.1969 32 1 4.1150 2.8806 1.4212 33 1 3.1016 3.9568 2.4127 34 1 0.4774 3.6865 2.9306 35 1 -0.8248 3.8743 5.0102 36 1 -0.4061 2.3197 6.8718 37 1 0.8651 0.4419 7.7104 38 1 2.0571 -0.3181 6.8026 39 1 2.6206 0.3781 4.5565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:39 Heat of formation + Delta-G solvation = 12.525907 kcal Electronic energy + Delta-G solvation = -18221.652327 eV Core-core repulsion = 15549.204144 eV Total energy + Delta-G solvation = -2672.448183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.25167 -36.76138 -34.47755 -33.16488 -31.27719 -30.01680 -28.30581 -27.91161 -25.76071 -23.35411 -22.95896 -21.97031 -20.17479 -18.72843 -16.93641 -16.63916 -15.96321 -15.47204 -14.93002 -14.12494 -14.05011 -13.69157 -13.32250 -13.16107 -12.87355 -12.71879 -12.31538 -11.93767 -11.82059 -11.62822 -11.14281 -10.95289 -10.90629 -10.62743 -10.40584 -10.26269 -10.20916 -9.97208 -9.64519 -9.32143 -8.73314 -8.45178 -8.36734 -7.27757 -7.15242 -5.98983 -4.03919 1.78216 2.00166 3.30227 3.38677 3.42417 3.97750 4.23970 4.43236 5.08410 5.26540 5.31841 5.44116 5.54371 5.71537 5.82391 5.88389 5.93807 6.06852 6.20668 6.36511 6.45737 6.54560 6.61823 6.65497 6.75186 6.90258 6.95304 7.13344 7.25158 7.31913 7.40449 7.55588 7.68831 7.79977 7.83836 7.84896 7.90184 8.32041 8.45675 8.72697 9.06472 9.60817 11.06945 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.034996 B = 0.005245 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.909139 B = 5336.949828 C = 5430.835398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.675 5.675 14 C 0.117 3.883 15 H 0.077 0.923 16 C -0.171 4.171 17 C -0.003 4.003 18 C -0.151 4.151 19 C -0.078 4.078 20 C -0.212 4.212 21 C 0.207 3.793 22 N -0.885 5.885 23 C -0.196 4.196 24 H 0.043 0.957 25 H 0.011 0.989 26 H 0.055 0.945 27 H 0.008 0.992 28 H 0.085 0.915 29 H 0.259 0.741 30 H 0.331 0.669 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.393 0.607 38 H 0.395 0.605 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 1.678 15.053 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.305 5.305 14 C 0.006 3.994 15 H 0.095 0.905 16 C -0.229 4.229 17 C -0.005 4.005 18 C -0.171 4.171 19 C -0.097 4.097 20 C -0.234 4.234 21 C 0.104 3.896 22 N -0.425 5.425 23 C -0.219 4.219 24 H 0.062 0.938 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.220 0.780 38 H 0.222 0.778 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.720 1.087 15.010 15.148 hybrid contribution 0.504 0.601 -0.810 1.127 sum -1.216 1.689 14.201 14.352 Atomic orbital electron populations 1.21439 0.97551 0.97255 1.01387 1.21437 0.95033 0.98333 0.99259 1.19136 0.92930 0.91378 0.85657 0.98088 1.21227 1.31380 1.11865 0.90336 0.92283 1.24878 0.95088 0.95000 0.98886 1.69897 1.36697 1.22756 1.23457 0.86545 0.78518 0.79712 0.83251 1.19778 1.21221 1.21073 1.60764 1.48383 1.15837 1.05521 1.20468 0.90681 0.98737 0.89510 0.90483 1.22435 0.99326 0.99480 1.01704 1.19758 0.94327 0.92613 0.93766 1.20727 0.98081 1.00724 0.97535 1.20828 0.98219 0.97656 0.93016 1.20419 1.02635 0.99773 1.00598 1.17690 0.93837 0.89958 0.88072 1.42400 1.45679 1.37677 1.16745 1.20414 1.04411 1.03517 0.93535 0.93790 0.96976 0.92639 0.97321 0.89633 0.93087 0.85105 0.93225 0.91969 0.92719 0.86289 0.86768 0.87187 0.77972 0.77789 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.52 37.16 0.35 -2.39 16 2 C -0.10 -2.50 5.57 -26.73 -0.15 -2.65 16 3 C 0.22 5.30 2.11 -68.87 -0.14 5.15 16 4 H 0.00 0.04 7.28 -51.93 -0.38 -0.34 16 5 C -0.51 -13.50 7.29 -34.44 -0.25 -13.76 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.67 -13.95 4.76 -102.18 -0.49 -14.43 16 14 C 0.12 2.11 2.59 -68.87 -0.18 1.93 16 15 H 0.08 1.49 7.04 -51.93 -0.37 1.12 16 16 C -0.17 -2.78 9.13 37.16 0.34 -2.44 16 17 C 0.00 -0.05 4.95 -104.66 -0.52 -0.57 16 18 C -0.15 -2.38 9.32 -39.55 -0.37 -2.75 16 19 C -0.08 -1.09 10.04 -39.61 -0.40 -1.49 16 20 C -0.21 -2.80 9.90 -39.38 -0.39 -3.19 16 21 C 0.21 2.80 6.75 -83.78 -0.57 2.23 16 22 N -0.89 -8.77 9.09 32.41 0.29 -8.47 16 23 C -0.20 -2.97 9.52 -39.38 -0.37 -3.35 16 24 H 0.04 0.98 7.71 -51.93 -0.40 0.58 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.05 1.36 7.10 -51.93 -0.37 0.99 16 27 H 0.01 0.19 7.53 -51.92 -0.39 -0.20 16 28 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.33 6.73 7.36 -39.29 -0.29 6.44 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.10 7.61 -51.93 -0.40 0.71 16 33 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.12 1.87 7.31 -52.48 -0.38 1.49 16 35 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.39 3.04 8.84 -40.82 -0.36 2.68 16 38 H 0.39 3.34 8.84 -40.82 -0.36 2.98 16 39 H 0.11 1.60 8.03 -52.49 -0.42 1.18 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -28.51 315.16 -8.65 -37.16 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.08 Total: 10.99 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -2.74 Total: -21.65 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.44 Total: -47.32 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.51 -8.65 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.686 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds