Wall clock time and date at job start Mon Mar 30 2020 18:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 H 1.08999 * 109.47104 * 306.32042 * 3 2 1 5 5 C 1.50701 * 109.46954 * 186.31967 * 3 2 1 6 6 H 1.08007 * 120.00295 * 244.83387 * 5 3 2 7 7 C 1.37878 * 119.99901 * 64.83504 * 5 3 2 8 8 N 1.31518 * 120.00084 * 9.63615 * 7 5 3 9 9 Si 1.86804 * 120.00038 * 189.63945 * 7 5 3 10 10 H 1.48506 * 109.46827 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47018 * 299.99444 * 9 7 5 12 12 H 1.48488 * 109.47350 * 59.99760 * 9 7 5 13 13 N 1.46898 * 109.47274 * 66.32278 * 3 2 1 14 14 C 1.46892 * 111.00141 * 222.30907 * 13 3 2 15 15 C 1.53003 * 109.47415 * 302.96080 * 14 13 3 16 16 C 1.53003 * 109.47164 * 62.96443 * 14 13 3 17 17 C 1.50703 * 109.47150 * 182.96187 * 14 13 3 18 18 C 1.38644 * 120.78909 * 359.72017 * 17 14 13 19 19 C 1.38209 * 119.15982 * 179.79483 * 18 17 14 20 20 N 1.31872 * 120.76398 * 0.49197 * 19 18 17 21 21 C 1.31867 * 121.72497 * 359.73485 * 20 19 18 22 22 C 1.38196 * 120.76747 * 0.02819 * 21 20 19 23 23 H 1.09005 * 109.47010 * 300.96296 * 1 2 3 24 24 H 1.08997 * 109.47361 * 60.96128 * 1 2 3 25 25 H 1.08999 * 109.46979 * 180.96342 * 1 2 3 26 26 H 1.08992 * 109.47327 * 239.99907 * 2 1 3 27 27 H 1.09006 * 109.47025 * 120.00059 * 2 1 3 28 28 H 0.96999 * 119.99643 * 1.19980 * 8 7 5 29 29 H 1.00908 * 110.99979 * 346.26513 * 13 3 2 30 30 H 1.08999 * 109.46645 * 61.83314 * 15 14 13 31 31 H 1.08995 * 109.47214 * 181.83385 * 15 14 13 32 32 H 1.09000 * 109.47049 * 301.84377 * 15 14 13 33 33 H 1.08994 * 109.46905 * 58.94339 * 16 14 13 34 34 H 1.09003 * 109.46950 * 178.94571 * 16 14 13 35 35 H 1.08998 * 109.46549 * 298.94088 * 16 14 13 36 36 H 1.07994 * 120.42300 * 0.02562 * 18 17 14 37 37 H 1.08003 * 119.61771 * 180.20335 * 19 18 17 38 38 H 1.08009 * 119.61286 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.42256 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5872 1.9879 -0.8280 5 6 3.5389 1.4454 -0.1564 6 1 4.1646 1.8128 0.6436 7 6 4.1114 0.9789 -1.3207 8 7 3.3559 0.7101 -2.3632 9 14 5.9600 0.7287 -1.4176 10 1 6.3212 0.2243 -2.7668 11 1 6.6481 2.0217 -1.1725 12 1 6.3804 -0.2581 -0.3907 13 7 1.6788 2.0896 1.2684 14 6 1.1991 3.4595 1.0426 15 6 2.2724 4.2604 0.3028 16 6 -0.0785 3.4203 0.2016 17 6 0.9079 4.1146 2.3682 18 6 1.0965 3.4261 3.5567 19 6 0.8229 4.0610 4.7535 20 7 0.3785 5.3025 4.7722 21 6 0.1831 5.9859 3.6616 22 6 0.4395 5.4183 2.4279 23 1 -0.3633 0.5287 0.8813 24 1 -0.3634 0.4988 -0.8984 25 1 -0.3633 -1.0275 0.0173 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 2.3981 0.8565 -2.3187 29 1 0.9937 1.5445 1.7702 30 1 2.4596 3.8052 -0.6697 31 1 1.9296 5.2857 0.1641 32 1 3.1927 4.2607 0.8869 33 1 -0.8370 2.8340 0.7202 34 1 -0.4448 4.4357 0.0499 35 1 0.1365 2.9635 -0.7644 36 1 1.4563 2.4079 3.5477 37 1 0.9704 3.5328 5.6839 38 1 -0.1816 7.0011 3.7167 39 1 0.2779 5.9833 1.5218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:44 Heat of formation + Delta-G solvation = 26.842827 kcal Electronic energy + Delta-G solvation = -18813.200178 eV Core-core repulsion = 16141.372823 eV Total energy + Delta-G solvation = -2671.827355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.20076 -37.84225 -34.56195 -31.91776 -31.08394 -30.91637 -28.90257 -26.93932 -25.89416 -23.64060 -23.10504 -22.74979 -20.26832 -19.06694 -16.96162 -16.58900 -15.93028 -15.28361 -14.62476 -14.52288 -13.82696 -13.70967 -13.54324 -13.46156 -13.18614 -12.75398 -12.39944 -12.03512 -11.74592 -11.61845 -11.49525 -11.07757 -10.81454 -10.75585 -10.68456 -10.43699 -10.07981 -10.04087 -9.79015 -9.27660 -9.22387 -8.94494 -8.75372 -8.32441 -7.35491 -6.29587 -3.98668 1.34083 1.50859 3.45656 3.47339 3.65583 4.02627 4.52526 4.61336 4.73207 4.91259 5.18478 5.34255 5.35087 5.42416 5.50882 5.55379 5.82469 5.85178 5.89759 5.94331 5.98629 6.07195 6.13597 6.15122 6.32344 6.35034 6.53508 6.60244 6.65281 6.77499 6.82519 6.91910 7.04202 7.14451 7.32541 7.96085 8.13718 8.17984 8.38891 8.69121 8.93903 9.68699 11.04897 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.006635 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.077517 B = 4218.909628 C = 4568.792575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.206 3.794 4 H 0.013 0.987 5 C -0.569 4.569 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 1.063 2.937 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.666 5.666 14 C 0.151 3.849 15 C -0.123 4.123 16 C -0.175 4.175 17 C -0.013 4.013 18 C -0.154 4.154 19 C 0.089 3.911 20 N -0.498 5.498 21 C 0.089 3.911 22 C -0.172 4.172 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.267 0.733 29 H 0.319 0.681 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 5.737 7.436 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.175 4.175 3 C 0.098 3.902 4 H 0.031 0.969 5 C -0.608 4.608 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.553 5.553 9 Si 0.892 3.108 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.216 1.216 13 N -0.297 5.297 14 C 0.059 3.941 15 C -0.180 4.180 16 C -0.234 4.234 17 C -0.022 4.022 18 C -0.174 4.174 19 C -0.067 4.067 20 N -0.207 5.207 21 C -0.068 4.068 22 C -0.192 4.192 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.115 5.812 7.365 10.686 hybrid contribution -1.946 -0.123 -0.181 1.958 sum -7.061 5.689 7.184 11.568 Atomic orbital electron populations 1.21925 0.98878 1.00012 1.00178 1.22002 0.92023 1.01204 1.02264 1.19373 0.96478 0.88757 0.85550 0.96923 1.21953 0.90786 1.44707 1.03314 0.92655 1.25697 1.06462 0.94352 0.92202 1.70832 1.07316 1.46822 1.30335 0.83620 0.74901 0.76477 0.75791 1.21093 1.21668 1.21577 1.60931 1.43889 1.00552 1.24349 1.19737 0.93375 0.91550 0.89427 1.21769 0.97735 0.96731 1.01780 1.22608 0.97746 1.01551 1.01491 1.20470 0.92517 0.93361 0.95840 1.22168 1.00278 1.02550 0.92366 1.22728 0.95225 0.90900 0.97874 1.67604 1.12999 1.08413 1.31709 1.22593 0.96910 0.99429 0.87846 1.21957 1.01962 0.95962 0.99342 0.94153 0.93675 0.94056 0.90885 0.93100 0.92180 0.86282 0.90366 0.94178 0.91937 0.93244 0.92849 0.91177 0.83720 0.83204 0.83356 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.79 37.16 0.36 -2.31 16 2 C -0.14 -2.92 5.06 -26.73 -0.14 -3.05 16 3 C 0.21 4.63 0.77 -68.87 -0.05 4.58 16 4 H 0.01 0.32 4.25 -51.93 -0.22 0.10 16 5 C -0.57 -14.89 7.58 -34.44 -0.26 -15.15 16 6 H 0.06 1.52 7.83 -52.48 -0.41 1.11 16 7 C 0.02 0.44 5.14 -17.82 -0.09 0.35 16 8 N -0.92 -26.10 12.90 55.43 0.72 -25.39 16 9 Si 1.06 24.71 29.91 -169.99 -5.09 19.62 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.67 -12.86 4.92 -95.41 -0.47 -13.33 16 14 C 0.15 2.60 0.78 -132.75 -0.10 2.49 16 15 C -0.12 -2.27 7.60 37.16 0.28 -1.99 16 16 C -0.17 -2.77 8.19 37.16 0.30 -2.47 16 17 C -0.01 -0.21 4.79 -104.32 -0.50 -0.71 16 18 C -0.15 -2.31 9.24 -39.44 -0.36 -2.68 16 19 C 0.09 1.25 11.18 -17.54 -0.20 1.05 16 20 N -0.50 -7.33 10.36 -13.25 -0.14 -7.47 16 21 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 22 C -0.17 -2.37 8.81 -39.44 -0.35 -2.71 16 23 H 0.04 0.65 6.56 -51.93 -0.34 0.30 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.77 6.40 -51.93 -0.33 1.44 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.27 7.54 6.25 -40.82 -0.25 7.28 16 29 H 0.32 5.72 5.70 -39.29 -0.22 5.49 16 30 H 0.08 1.68 6.30 -51.93 -0.33 1.35 16 31 H 0.04 0.63 7.42 -51.93 -0.39 0.24 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.75 7.99 -51.93 -0.41 0.33 16 34 H 0.05 0.74 7.45 -51.93 -0.39 0.36 16 35 H 0.07 1.23 6.26 -51.93 -0.33 0.91 16 36 H 0.15 2.18 6.61 -52.49 -0.35 1.83 16 37 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.13 1.55 7.25 -52.49 -0.38 1.17 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -28.41 304.45 -7.37 -35.78 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.68 Total: 7.82 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -1.30 Total: -21.62 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.11 Total: -46.19 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.09 Total: 19.62 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.41 -7.37 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.621 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds