Wall clock time and date at job start Mon Mar 30 2020 18:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 H 1.08999 * 109.47104 * 306.32042 * 3 2 1 5 5 C 1.50701 * 109.46954 * 186.31967 * 3 2 1 6 6 H 1.08007 * 120.00295 * 244.83387 * 5 3 2 7 7 C 1.37878 * 119.99901 * 64.83504 * 5 3 2 8 8 N 1.31518 * 120.00084 * 9.63615 * 7 5 3 9 9 Si 1.86804 * 120.00038 * 189.63945 * 7 5 3 10 10 H 1.48506 * 109.46827 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47018 * 299.99444 * 9 7 5 12 12 H 1.48488 * 109.47350 * 59.99760 * 9 7 5 13 13 N 1.46898 * 109.47274 * 66.32278 * 3 2 1 14 14 C 1.46892 * 111.00141 * 222.30907 * 13 3 2 15 15 C 1.53003 * 109.47415 * 302.96080 * 14 13 3 16 16 C 1.53003 * 109.47164 * 62.96443 * 14 13 3 17 17 C 1.50703 * 109.47150 * 182.96187 * 14 13 3 18 18 C 1.38644 * 120.78909 * 359.72017 * 17 14 13 19 19 C 1.38209 * 119.15982 * 179.79483 * 18 17 14 20 20 N 1.31872 * 120.76398 * 0.49197 * 19 18 17 21 21 C 1.31867 * 121.72497 * 359.73485 * 20 19 18 22 22 C 1.38196 * 120.76747 * 0.02819 * 21 20 19 23 23 H 1.09005 * 109.47010 * 300.96296 * 1 2 3 24 24 H 1.08997 * 109.47361 * 60.96128 * 1 2 3 25 25 H 1.08999 * 109.46979 * 180.96342 * 1 2 3 26 26 H 1.08992 * 109.47327 * 239.99907 * 2 1 3 27 27 H 1.09006 * 109.47025 * 120.00059 * 2 1 3 28 28 H 0.96999 * 119.99643 * 1.19980 * 8 7 5 29 29 H 1.00908 * 110.99979 * 346.26513 * 13 3 2 30 30 H 1.08999 * 109.46645 * 61.83314 * 15 14 13 31 31 H 1.08995 * 109.47214 * 181.83385 * 15 14 13 32 32 H 1.09000 * 109.47049 * 301.84377 * 15 14 13 33 33 H 1.08994 * 109.46905 * 58.94339 * 16 14 13 34 34 H 1.09003 * 109.46950 * 178.94571 * 16 14 13 35 35 H 1.08998 * 109.46549 * 298.94088 * 16 14 13 36 36 H 1.07994 * 120.42300 * 0.02562 * 18 17 14 37 37 H 1.08003 * 119.61771 * 180.20335 * 19 18 17 38 38 H 1.08009 * 119.61286 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.42256 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5872 1.9879 -0.8280 5 6 3.5389 1.4454 -0.1564 6 1 4.1646 1.8128 0.6436 7 6 4.1114 0.9789 -1.3207 8 7 3.3559 0.7101 -2.3632 9 14 5.9600 0.7287 -1.4176 10 1 6.3212 0.2243 -2.7668 11 1 6.6481 2.0217 -1.1725 12 1 6.3804 -0.2581 -0.3907 13 7 1.6788 2.0896 1.2684 14 6 1.1991 3.4595 1.0426 15 6 2.2724 4.2604 0.3028 16 6 -0.0785 3.4203 0.2016 17 6 0.9079 4.1146 2.3682 18 6 1.0965 3.4261 3.5567 19 6 0.8229 4.0610 4.7535 20 7 0.3785 5.3025 4.7722 21 6 0.1831 5.9859 3.6616 22 6 0.4395 5.4183 2.4279 23 1 -0.3633 0.5287 0.8813 24 1 -0.3634 0.4988 -0.8984 25 1 -0.3633 -1.0275 0.0173 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 2.3981 0.8565 -2.3187 29 1 0.9937 1.5445 1.7702 30 1 2.4596 3.8052 -0.6697 31 1 1.9296 5.2857 0.1641 32 1 3.1927 4.2607 0.8869 33 1 -0.8370 2.8340 0.7202 34 1 -0.4448 4.4357 0.0499 35 1 0.1365 2.9635 -0.7644 36 1 1.4563 2.4079 3.5477 37 1 0.9704 3.5328 5.6839 38 1 -0.1816 7.0011 3.7167 39 1 0.2779 5.9833 1.5218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:43 Heat of formation + Delta-G solvation = 10.123547 kcal Electronic energy + Delta-G solvation = -18813.925180 eV Core-core repulsion = 16141.372823 eV Total energy + Delta-G solvation = -2672.552357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37095 -39.30626 -36.19123 -33.77261 -32.23377 -32.16935 -30.36697 -28.48589 -27.57395 -25.15965 -24.50071 -24.02722 -21.87473 -20.54201 -18.74338 -18.01666 -17.15339 -16.41929 -16.20957 -15.88403 -15.62601 -15.08779 -14.91015 -14.72211 -14.46977 -14.24336 -13.96582 -13.62385 -13.25329 -13.12157 -12.86151 -12.62632 -12.49408 -12.35084 -12.18071 -12.06793 -11.93774 -11.68537 -11.47069 -10.68664 -10.41406 -10.37656 -10.33528 -10.00068 -9.03894 -8.42072 -6.12938 0.28321 0.37283 1.54924 1.60673 1.79798 2.61094 2.94191 3.26387 3.35494 3.62101 3.66574 4.01918 4.16889 4.18924 4.28991 4.31815 4.36879 4.37506 4.50076 4.65173 4.72358 4.79110 4.84092 4.85936 4.91912 4.98340 5.05807 5.08898 5.15072 5.26507 5.38292 5.44627 5.54424 5.60235 5.85601 6.10794 6.29406 6.62165 6.70545 6.96660 7.07918 7.60298 8.90515 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.006635 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.077517 B = 4218.909628 C = 4568.792575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.214 3.786 4 H -0.004 1.004 5 C -0.571 4.571 6 H 0.037 0.963 7 C -0.029 4.029 8 N -0.940 5.940 9 Si 1.101 2.899 10 H -0.288 1.288 11 H -0.279 1.279 12 H -0.277 1.277 13 N -0.670 5.670 14 C 0.152 3.848 15 C -0.115 4.115 16 C -0.167 4.167 17 C -0.028 4.028 18 C -0.166 4.166 19 C 0.089 3.911 20 N -0.513 5.513 21 C 0.091 3.909 22 C -0.171 4.171 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.258 0.742 29 H 0.329 0.671 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.139 0.861 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 6.840 8.847 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.106 3.894 4 H 0.013 0.987 5 C -0.610 4.610 6 H 0.056 0.944 7 C -0.227 4.227 8 N -0.579 5.579 9 Si 0.926 3.074 10 H -0.214 1.214 11 H -0.205 1.205 12 H -0.203 1.203 13 N -0.302 5.302 14 C 0.061 3.939 15 C -0.173 4.173 16 C -0.226 4.226 17 C -0.036 4.036 18 C -0.186 4.186 19 C -0.067 4.067 20 N -0.223 5.223 21 C -0.066 4.066 22 C -0.191 4.191 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.157 0.843 37 H 0.191 0.809 38 H 0.198 0.802 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.168 6.921 8.800 12.783 hybrid contribution -1.640 -0.393 -0.554 1.775 sum -7.809 6.528 8.247 13.100 Atomic orbital electron populations 1.21786 0.95561 1.01545 1.00848 1.21833 0.94974 0.99772 1.00372 1.19095 0.94352 0.89514 0.86447 0.98660 1.22211 0.92854 1.43566 1.02347 0.94441 1.26780 1.09493 0.94245 0.92191 1.70924 1.06993 1.48815 1.31126 0.83102 0.71373 0.77095 0.75807 1.21417 1.20508 1.20310 1.60756 1.45011 1.01686 1.22703 1.19705 0.93385 0.90017 0.90812 1.21665 0.97584 0.98508 0.99494 1.22501 0.97165 1.02980 0.99959 1.20358 0.94049 0.94418 0.94793 1.22184 1.01011 1.02525 0.92831 1.23063 0.94396 0.90859 0.98378 1.67690 1.13400 1.08703 1.32478 1.23122 0.95716 1.00563 0.87164 1.22152 1.01272 0.95137 1.00533 0.92314 0.94026 0.92150 0.94202 0.93450 0.93166 0.85222 0.94002 0.91165 0.94127 0.92272 0.90520 0.93486 0.84331 0.80928 0.80200 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.79 71.98 0.70 -4.06 16 2 C -0.13 -5.67 5.06 30.59 0.15 -5.51 16 3 C 0.21 9.85 0.77 44.17 0.03 9.88 16 4 H 0.00 -0.20 4.25 -2.39 -0.01 -0.21 16 5 C -0.57 -30.68 7.58 25.60 0.19 -30.49 16 6 H 0.04 2.10 7.83 -2.91 -0.02 2.08 16 7 C -0.03 -1.61 5.14 84.65 0.44 -1.17 16 8 N -0.94 -55.15 12.90 21.45 0.28 -54.87 16 9 Si 1.10 50.52 29.91 68.60 2.05 52.58 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.67 -25.80 4.92 -455.79 -2.24 -28.04 16 14 C 0.15 5.11 0.78 2.79 0.00 5.11 16 15 C -0.11 -4.26 7.60 71.98 0.55 -3.71 16 16 C -0.17 -5.05 8.19 71.98 0.59 -4.46 16 17 C -0.03 -0.81 4.79 -19.67 -0.09 -0.90 16 18 C -0.17 -4.72 9.24 22.36 0.21 -4.51 16 19 C 0.09 2.29 11.18 84.68 0.95 3.23 16 20 N -0.51 -13.65 10.36 -195.84 -2.03 -15.68 16 21 C 0.09 2.10 11.18 84.68 0.95 3.04 16 22 C -0.17 -4.18 8.81 22.36 0.20 -3.98 16 23 H 0.06 1.77 6.56 -2.38 -0.02 1.75 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.98 6.40 -2.39 -0.02 1.97 16 27 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.26 15.15 6.25 -92.71 -0.58 14.58 16 29 H 0.33 11.49 5.70 -89.69 -0.51 10.98 16 30 H 0.04 1.84 6.30 -2.39 -0.02 1.82 16 31 H 0.07 2.11 7.42 -2.39 -0.02 2.09 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.66 7.99 -2.39 -0.02 1.64 16 34 H 0.08 1.93 7.45 -2.39 -0.02 1.92 16 35 H 0.05 1.64 6.26 -2.39 -0.01 1.63 16 36 H 0.14 4.05 6.61 -2.91 -0.02 4.03 16 37 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.15 2.99 7.25 -2.91 -0.02 2.97 16 Total: -1.00 -62.24 304.45 3.64 -58.59 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.72 Total: 24.95 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 4.86 Total: -37.53 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -3.99 Total: -98.59 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.58 kcal Total: -62.24 3.64 -58.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.718 kcal (2) G-P(sol) polarization free energy of solvation -62.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds