Wall clock time and date at job start Mon Mar 30 2020 18:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 H 1.08990 * 109.47271 * 54.94844 * 3 2 1 5 5 C 1.50704 * 109.46787 * 174.94548 * 3 2 1 6 6 H 1.08001 * 120.00350 * 120.00247 * 5 3 2 7 7 C 1.37878 * 120.00088 * 299.99701 * 5 3 2 8 8 N 1.31516 * 119.99587 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00287 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47322 * 90.00071 * 9 7 5 11 11 H 1.48494 * 109.47437 * 210.00293 * 9 7 5 12 12 H 1.48501 * 109.47075 * 330.00060 * 9 7 5 13 13 N 1.46900 * 109.47245 * 294.94072 * 3 2 1 14 14 C 1.46898 * 110.99938 * 146.01574 * 13 3 2 15 15 C 1.53002 * 109.46831 * 53.95334 * 14 13 3 16 16 C 1.52999 * 109.47368 * 293.95534 * 14 13 3 17 17 C 1.50693 * 109.47199 * 173.95421 * 14 13 3 18 18 C 1.38648 * 120.79361 * 180.02562 * 17 14 13 19 19 C 1.38202 * 119.16891 * 179.97438 * 18 17 14 20 20 N 1.31870 * 120.76099 * 0.02562 * 19 18 17 21 21 C 1.31867 * 121.72568 * 359.96306 * 20 19 18 22 22 C 1.38204 * 120.76947 * 0.04030 * 21 20 19 23 23 H 1.09004 * 109.47287 * 185.95568 * 1 2 3 24 24 H 1.09002 * 109.46872 * 305.95430 * 1 2 3 25 25 H 1.08996 * 109.47233 * 65.95729 * 1 2 3 26 26 H 1.09000 * 109.46879 * 239.99711 * 2 1 3 27 27 H 1.08998 * 109.46919 * 120.00107 * 2 1 3 28 28 H 0.97010 * 119.99472 * 179.97438 * 8 7 5 29 29 H 1.00904 * 110.99923 * 22.06489 * 13 3 2 30 30 H 1.09005 * 109.46705 * 173.78338 * 15 14 13 31 31 H 1.08999 * 109.47308 * 293.77982 * 15 14 13 32 32 H 1.08999 * 109.47187 * 53.78704 * 15 14 13 33 33 H 1.09001 * 109.46755 * 306.17913 * 16 14 13 34 34 H 1.09000 * 109.47228 * 66.17235 * 16 14 13 35 35 H 1.09000 * 109.47183 * 186.17570 * 16 14 13 36 36 H 1.08002 * 120.41482 * 359.69814 * 18 17 14 37 37 H 1.07998 * 119.62059 * 179.97438 * 19 18 17 38 38 H 1.08009 * 119.61961 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.42335 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9818 0.8412 5 6 3.5418 1.4443 0.1252 6 1 4.1479 1.8887 -0.6505 7 6 4.1422 0.8788 1.2301 8 7 3.4042 0.3374 2.1744 9 14 6.0037 0.8816 1.3856 10 1 6.4398 2.1148 2.0887 11 1 6.4376 -0.3091 2.1595 12 1 6.6135 0.8415 0.0322 13 7 1.6526 2.0989 -1.2558 14 6 1.3664 3.5233 -1.0389 15 6 2.5615 4.1841 -0.3489 16 6 0.1251 3.6655 -0.1558 17 6 1.1186 4.1936 -2.3655 18 6 0.8256 5.5471 -2.4332 19 6 0.6047 6.1276 -3.6678 20 7 0.6695 5.4096 -4.7720 21 6 0.9458 4.1204 -4.7456 22 6 1.1783 3.4715 -3.5478 23 1 -0.3634 -1.0221 0.1066 24 1 -0.3633 0.6034 0.8319 25 1 -0.3633 0.4187 -0.9385 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8266 -0.0608 2.9516 29 1 0.8646 1.6323 -1.6796 30 1 2.3962 5.2598 -0.2872 31 1 2.6728 3.7755 0.6555 32 1 3.4668 3.9881 -0.9234 33 1 -0.6987 3.1018 -0.5937 34 1 0.3413 3.2785 0.8400 35 1 -0.1517 4.7174 -0.0847 36 1 0.7663 6.1394 -1.5320 37 1 0.3755 7.1812 -3.7289 38 1 0.9907 3.5651 -5.6709 39 1 1.4037 2.4154 -3.5326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:45 Heat of formation + Delta-G solvation = 14.040268 kcal Electronic energy + Delta-G solvation = -18772.818441 eV Core-core repulsion = 16100.435925 eV Total energy + Delta-G solvation = -2672.382515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28508 -39.10851 -35.90823 -33.75504 -32.15588 -32.10897 -30.17312 -28.74215 -27.69853 -25.11965 -24.36114 -23.93797 -21.60493 -20.32066 -18.31927 -17.91275 -17.11492 -16.55596 -16.27749 -15.78065 -15.59508 -15.00046 -14.82458 -14.51872 -14.47460 -14.22676 -13.78713 -13.39287 -13.16959 -12.94270 -12.83112 -12.72514 -12.58879 -12.34841 -12.23070 -12.02039 -11.73487 -11.48584 -11.35222 -10.95027 -10.36704 -10.33763 -10.29729 -9.94662 -8.93561 -8.00587 -6.08262 0.33622 0.43549 1.40499 1.43619 1.52129 2.46748 2.99663 3.24806 3.47614 3.70876 3.73015 4.11396 4.25483 4.28707 4.34954 4.43320 4.52650 4.58587 4.71969 4.73999 4.82438 4.86879 4.93820 5.02713 5.04429 5.08586 5.16905 5.26486 5.38392 5.42929 5.55041 5.59296 5.72069 5.84638 5.91265 5.95543 6.43121 6.63143 7.00599 7.04074 7.12815 7.58615 9.02177 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025354 B = 0.006792 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.114687 B = 4121.217367 C = 4552.854061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.228 3.772 4 H -0.006 1.006 5 C -0.489 4.489 6 H 0.047 0.953 7 C 0.011 3.989 8 N -0.920 5.920 9 Si 0.942 3.058 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.152 3.848 15 C -0.115 4.115 16 C -0.165 4.165 17 C -0.026 4.026 18 C -0.172 4.172 19 C 0.089 3.911 20 N -0.515 5.515 21 C 0.087 3.913 22 C -0.164 4.164 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.257 0.743 29 H 0.328 0.672 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.180 0.820 38 H 0.172 0.828 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.177 7.706 -7.457 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.120 3.880 4 H 0.011 0.989 5 C -0.528 4.528 6 H 0.066 0.934 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.769 3.231 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.308 5.308 14 C 0.061 3.939 15 C -0.173 4.173 16 C -0.224 4.224 17 C -0.035 4.035 18 C -0.192 4.192 19 C -0.067 4.067 20 N -0.224 5.224 21 C -0.069 4.069 22 C -0.184 4.184 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.147 0.853 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.166 0.834 37 H 0.197 0.803 38 H 0.190 0.810 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.643 8.116 -8.294 13.371 hybrid contribution 0.567 -0.903 1.798 2.091 sum -6.077 7.212 -6.496 11.451 Atomic orbital electron populations 1.21747 0.96491 1.00892 1.00381 1.21697 0.94004 0.99783 1.01160 1.18935 0.93655 0.89926 0.85480 0.98855 1.21456 0.92848 1.34865 1.03629 0.93439 1.25530 1.01126 0.95949 0.96065 1.69986 1.35725 1.40396 1.10055 0.85803 0.82319 0.77217 0.77729 1.20645 1.21340 1.20015 1.60806 1.40910 1.00910 1.28183 1.19681 0.94344 0.89399 0.90511 1.21725 0.96729 0.98779 1.00066 1.22464 0.97315 1.02802 0.99850 1.20408 0.93858 0.94221 0.95017 1.22154 1.01862 0.94717 1.00428 1.23103 0.95405 1.00950 0.87279 1.67677 1.14020 1.08118 1.32616 1.23053 0.94913 0.90600 0.98331 1.22201 1.00784 1.02576 0.92812 0.92847 0.94347 0.92646 0.94763 0.91451 0.93398 0.85328 0.91566 0.93436 0.93955 0.92586 0.93431 0.90581 0.83358 0.80325 0.81043 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.67 71.98 0.70 -4.22 16 2 C -0.13 -5.74 5.29 30.59 0.16 -5.57 16 3 C 0.23 10.55 1.31 44.17 0.06 10.61 16 4 H -0.01 -0.31 5.30 -2.39 -0.01 -0.32 16 5 C -0.49 -25.78 6.92 25.60 0.18 -25.60 16 6 H 0.05 2.59 7.28 -2.91 -0.02 2.57 16 7 C 0.01 0.58 5.29 84.65 0.45 1.03 16 8 N -0.92 -51.54 11.29 21.45 0.24 -51.29 16 9 Si 0.94 43.70 29.54 68.60 2.03 45.73 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.68 -26.04 4.83 -455.80 -2.20 -28.24 16 14 C 0.15 5.12 0.78 2.78 0.00 5.12 16 15 C -0.12 -4.24 7.18 71.98 0.52 -3.73 16 16 C -0.17 -5.05 8.21 71.98 0.59 -4.46 16 17 C -0.03 -0.78 4.79 -19.67 -0.09 -0.88 16 18 C -0.17 -4.25 8.69 22.36 0.19 -4.05 16 19 C 0.09 2.09 11.18 84.68 0.95 3.04 16 20 N -0.51 -13.92 10.36 -195.84 -2.03 -15.95 16 21 C 0.09 2.27 11.18 84.68 0.95 3.22 16 22 C -0.16 -4.72 9.27 22.36 0.21 -4.51 16 23 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.72 6.68 -2.39 -0.02 1.71 16 26 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 3.50 5.95 -2.39 -0.01 3.49 16 28 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 29 H 0.33 11.54 5.77 -89.69 -0.52 11.02 16 30 H 0.07 1.98 7.28 -2.38 -0.02 1.96 16 31 H 0.05 2.03 6.38 -2.39 -0.02 2.02 16 32 H 0.04 1.71 7.53 -2.39 -0.02 1.69 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.67 6.48 -2.39 -0.02 1.66 16 35 H 0.08 1.93 7.27 -2.39 -0.02 1.91 16 36 H 0.15 3.02 7.20 -2.91 -0.02 3.00 16 37 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.14 4.13 6.69 -2.91 -0.02 4.11 16 Total: -1.00 -59.13 303.91 3.41 -55.73 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.52 Total: 24.03 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 4.85 Total: -30.00 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -3.99 Total: -95.48 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -59.13 3.41 -55.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.766 kcal (2) G-P(sol) polarization free energy of solvation -59.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds