Wall clock time and date at job start Mon Mar 30 2020 18:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46697 * 2 1 4 4 H 1.08998 * 109.47216 * 57.03314 * 3 2 1 5 5 C 1.50708 * 109.46922 * 177.03126 * 3 2 1 6 6 H 1.07994 * 119.99732 * 119.99843 * 5 3 2 7 7 C 1.37872 * 119.99897 * 299.72566 * 5 3 2 8 8 N 1.31515 * 120.00417 * 0.27151 * 7 5 3 9 9 Si 1.86799 * 120.00010 * 180.27467 * 7 5 3 10 10 H 1.48506 * 109.47231 * 89.99990 * 9 7 5 11 11 H 1.48496 * 109.47426 * 209.99813 * 9 7 5 12 12 H 1.48496 * 109.47181 * 329.99808 * 9 7 5 13 13 N 1.46897 * 109.47335 * 297.03193 * 3 2 1 14 14 C 1.46955 * 110.99646 * 294.26317 * 13 3 2 15 15 C 1.53356 * 109.79266 * 164.65223 * 14 13 3 16 16 N 1.46798 * 108.21641 * 50.16892 * 15 14 13 17 17 C 1.35735 * 128.02964 * 163.32975 * 16 15 14 18 18 C 1.35057 * 108.16834 * 180.28609 * 17 16 15 19 19 C 1.41111 * 107.48422 * 359.93344 * 18 17 16 20 20 C 1.34122 * 107.32410 * 359.95275 * 19 18 17 21 21 C 1.47348 * 111.00249 * 170.10246 * 13 3 2 22 22 H 1.09005 * 109.75713 * 54.58432 * 21 13 3 23 23 C 1.53001 * 109.75143 * 293.89376 * 21 13 3 24 24 H 1.08996 * 109.47206 * 60.00082 * 1 2 3 25 25 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47278 * 299.99630 * 1 2 3 27 27 H 1.08996 * 109.47029 * 239.99951 * 2 1 3 28 28 H 1.08996 * 109.47206 * 119.99917 * 2 1 3 29 29 H 0.96994 * 120.00628 * 179.97438 * 8 7 5 30 30 H 1.09008 * 109.41554 * 284.72943 * 14 13 3 31 31 H 1.08994 * 109.42414 * 44.54141 * 14 13 3 32 32 H 1.09002 * 109.68041 * 290.50125 * 15 14 13 33 33 H 1.08997 * 109.76888 * 169.89136 * 15 14 13 34 34 H 1.07997 * 125.91510 * 0.30481 * 17 16 15 35 35 H 1.07995 * 126.25944 * 179.90351 * 18 17 16 36 36 H 1.07996 * 126.34026 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.47123 * 60.00271 * 23 21 13 38 38 H 1.09000 * 109.46986 * 179.97438 * 23 21 13 39 39 H 1.08999 * 109.46860 * 299.99402 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6338 1.9715 0.8622 5 6 3.5452 1.4432 0.0736 6 1 4.1242 1.8970 -0.7170 7 6 4.1828 0.8695 1.1530 8 7 3.4777 0.3168 2.1158 9 14 6.0484 0.8771 1.2480 10 1 6.5034 2.1052 1.9481 11 1 6.5109 -0.3193 1.9962 12 1 6.6140 0.8516 -0.1248 13 7 1.6096 2.1140 -1.2336 14 6 2.2482 1.5107 -2.4117 15 6 1.5143 1.9528 -3.6837 16 7 1.3789 3.4141 -3.6509 17 6 1.0855 4.2500 -4.6794 18 6 1.0673 5.5136 -4.2030 19 6 1.3604 5.4511 -2.8241 20 6 1.5441 4.1594 -2.5130 21 6 1.8757 3.5618 -1.1673 22 1 2.9274 3.7329 -0.9373 23 6 0.9999 4.1995 -0.0870 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9263 -0.0871 2.8750 30 1 3.2887 1.8315 -2.4640 31 1 2.2085 0.4246 -2.3292 32 1 0.5267 1.4925 -3.7164 33 1 2.0875 1.6561 -4.5620 34 1 0.8986 3.9555 -5.7015 35 1 0.8659 6.4083 -4.7732 36 1 1.4245 6.2883 -2.1448 37 1 1.2259 3.7465 0.8783 38 1 1.2006 5.2699 -0.0415 39 1 -0.0506 4.0364 -0.3279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:09 Heat of formation + Delta-G solvation = 40.426794 kcal Electronic energy + Delta-G solvation = -19196.076966 eV Core-core repulsion = 16524.838656 eV Total energy + Delta-G solvation = -2671.238310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.33635 -39.14306 -35.32035 -34.62208 -33.44949 -31.08070 -29.58434 -28.45512 -27.76736 -25.12451 -23.71653 -23.12816 -21.28155 -20.81766 -19.56002 -18.10920 -17.80308 -17.02614 -16.51731 -16.05819 -15.48110 -15.10212 -14.87584 -14.50155 -14.14359 -13.87322 -13.59017 -13.44367 -13.28729 -13.08284 -12.91194 -12.74827 -12.72780 -12.38613 -12.33779 -12.15376 -12.10093 -11.71041 -11.57343 -11.24073 -10.97095 -10.41664 -9.41611 -9.11566 -8.73104 -8.06095 -6.27133 1.34371 1.37757 1.44908 1.48021 2.16924 2.21340 2.38058 3.13449 3.22485 3.83199 3.89265 4.16277 4.29964 4.37799 4.48189 4.52995 4.57144 4.74793 4.75203 4.82579 4.88873 4.90673 4.94561 5.00597 5.10709 5.24775 5.31432 5.42201 5.47797 5.50101 5.52597 5.60955 5.78675 6.02277 6.14711 6.20969 6.35571 6.38430 6.58360 6.68758 6.92177 7.43526 8.89733 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.007759 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.612817 B = 3607.999191 C = 3940.718019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.043 0.957 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 0.940 3.060 10 H -0.281 1.281 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.524 5.524 14 C 0.049 3.951 15 C 0.114 3.886 16 N -0.448 5.448 17 C -0.015 4.015 18 C -0.220 4.220 19 C -0.212 4.212 20 C 0.010 3.990 21 C 0.152 3.848 22 H 0.029 0.971 23 C -0.118 4.118 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.190 0.810 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 4.011 -10.717 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.037 0.963 5 C -0.591 4.591 6 H 0.061 0.939 7 C -0.172 4.172 8 N -0.545 5.545 9 Si 0.767 3.233 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.248 5.248 14 C -0.079 4.079 15 C -0.007 4.007 16 N -0.124 5.124 17 C -0.146 4.146 18 C -0.245 4.245 19 C -0.236 4.236 20 C -0.102 4.102 21 C 0.042 3.958 22 H 0.047 0.953 23 C -0.176 4.176 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.207 0.793 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.427 3.442 -10.632 12.424 hybrid contribution 2.172 0.013 0.670 2.273 sum -3.255 3.455 -9.962 11.035 Atomic orbital electron populations 1.21561 0.96295 0.99776 1.00631 1.21457 0.94392 0.97928 1.00565 1.19126 0.91377 0.91532 0.86645 0.96338 1.21916 0.94007 1.37381 1.05840 0.93866 1.25499 1.01426 0.94921 0.95402 1.69973 1.36252 1.38304 1.10003 0.85837 0.82018 0.77535 0.77908 1.20666 1.20637 1.20006 1.62612 1.56930 1.01537 1.03718 1.22195 0.95004 1.00821 0.89913 1.22241 1.02587 0.76855 0.99020 1.44398 1.53233 1.07117 1.07663 1.22159 1.08698 0.89616 0.94079 1.21157 1.11547 0.97205 0.94576 1.20604 1.11134 0.94633 0.97269 1.20558 1.09397 0.91760 0.88458 1.20073 0.96912 0.88427 0.90361 0.95290 1.21594 0.99298 0.99919 0.96819 0.92615 0.93502 0.94947 0.94623 0.91837 0.92837 0.96378 0.88913 0.88902 0.87269 0.79305 0.82963 0.84594 0.93558 0.91052 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.78 71.98 0.70 -4.08 16 2 C -0.10 -4.75 5.14 30.59 0.16 -4.59 16 3 C 0.22 10.49 1.61 44.17 0.07 10.56 16 4 H 0.02 1.00 6.12 -2.39 -0.01 0.99 16 5 C -0.55 -29.07 7.12 25.60 0.18 -28.88 16 6 H 0.04 2.34 6.02 -2.91 -0.02 2.32 16 7 C 0.03 1.50 5.30 84.65 0.45 1.95 16 8 N -0.91 -50.29 11.31 21.45 0.24 -50.05 16 9 Si 0.94 43.03 29.54 68.60 2.03 45.05 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 N -0.52 -21.41 3.72 -852.18 -3.17 -24.58 16 14 C 0.05 1.81 4.66 86.41 0.40 2.22 16 15 C 0.11 3.23 7.23 86.44 0.62 3.85 16 16 N -0.45 -14.20 3.15 -508.73 -1.61 -15.81 16 17 C -0.02 -0.41 11.55 83.36 0.96 0.55 16 18 C -0.22 -6.17 10.87 22.24 0.24 -5.93 16 19 C -0.21 -6.92 10.29 22.04 0.23 -6.69 16 20 C 0.01 0.38 6.17 40.88 0.25 0.63 16 21 C 0.15 6.09 2.52 44.16 0.11 6.20 16 22 H 0.03 1.35 7.05 -2.38 -0.02 1.33 16 23 C -0.12 -4.36 8.91 71.98 0.64 -3.72 16 24 H 0.05 2.02 7.69 -2.39 -0.02 2.00 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.55 6.16 -2.39 -0.01 1.54 16 28 H 0.06 3.28 6.01 -2.39 -0.01 3.27 16 29 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.02 0.75 6.73 -2.38 -0.02 0.73 16 31 H 0.09 3.38 5.88 -2.39 -0.01 3.37 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.19 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.14 4.07 7.89 -2.91 -0.02 4.05 16 37 H 0.05 1.88 6.41 -2.39 -0.02 1.86 16 38 H 0.07 2.28 7.82 -2.39 -0.02 2.26 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -59.10 299.10 3.54 -55.56 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.02 Total: 17.75 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 5.03 Total: -27.93 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -4.54 Total: -90.44 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -59.10 3.54 -55.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.991 kcal (2) G-P(sol) polarization free energy of solvation -59.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds