Wall clock time and date at job start Mon Mar 30 2020 18:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.43198 * 119.99964 * 82.27115 * 3 2 1 5 5 N 3.51036 * 140.68729 * 82.26571 * 2 1 3 6 6 C 1.41148 * 119.99615 * 262.26979 * 3 2 1 7 7 C 1.38987 * 119.99507 * 186.38066 * 6 3 2 8 8 H 1.08001 * 120.00146 * 219.99266 * 7 6 3 9 9 C 1.40822 * 119.99914 * 40.27232 * 7 6 3 10 10 N 1.30341 * 119.99952 * 21.38898 * 9 7 6 11 11 Si 1.86804 * 119.99928 * 201.39020 * 9 7 6 12 12 H 1.48497 * 109.46942 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47226 * 119.99818 * 11 9 7 14 14 H 1.48497 * 109.46827 * 239.99993 * 11 9 7 15 15 N 1.38225 * 120.00420 * 6.38327 * 6 3 2 16 16 C 1.46510 * 120.00185 * 185.48083 * 15 6 3 17 17 H 1.09003 * 108.84710 * 325.23698 * 16 15 6 18 18 C 1.52937 * 108.88479 * 206.79832 * 16 15 6 19 19 C 1.55156 * 108.95624 * 209.10289 * 18 16 15 20 20 S 1.83987 * 100.91180 * 41.43894 * 19 18 16 21 21 C 1.53705 * 108.88693 * 83.81081 * 16 15 6 22 22 H 0.96999 * 119.99821 * 184.88669 * 10 9 7 23 23 H 0.97003 * 120.00025 * 5.47609 * 15 6 3 24 24 H 1.09001 * 109.60438 * 329.02999 * 18 16 15 25 25 H 1.08990 * 109.60663 * 89.17295 * 18 16 15 26 26 H 1.09003 * 111.13369 * 283.52471 * 19 18 16 27 27 H 1.08998 * 111.16707 * 159.36669 * 19 18 16 28 28 H 1.08994 * 110.33973 * 242.48976 * 21 16 15 29 29 H 1.09002 * 110.34238 * 4.75305 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2841 -0.1658 -1.2289 5 7 3.8520 -0.2993 -2.2038 6 6 3.2737 0.1654 1.2113 7 6 4.6570 0.2991 1.1970 8 1 5.2545 -0.1886 1.9530 9 6 5.2791 1.0752 0.2002 10 7 4.5974 1.9849 -0.4376 11 14 7.0812 0.8011 -0.2081 12 1 7.6245 -0.2808 0.6518 13 1 7.2119 0.4124 -1.6353 14 1 7.8400 2.0542 0.0351 15 7 2.5890 0.1937 2.4117 16 6 3.3047 0.4843 3.6567 17 1 4.3056 0.0570 3.5953 18 6 2.5600 -0.1716 4.8204 19 6 2.8014 0.6616 6.1068 20 16 2.6592 2.3726 5.4454 21 6 3.4232 2.0082 3.8184 22 1 5.0049 2.4704 -1.1718 23 1 1.6345 0.0213 2.4299 24 1 1.4929 -0.2035 4.6002 25 1 2.9308 -1.1860 4.9667 26 1 3.7964 0.4785 6.5126 27 1 2.0326 0.4639 6.8538 28 1 4.4708 2.3091 3.8159 29 1 2.8799 2.5171 3.0222 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255270723.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:32 Heat of formation + Delta-G solvation = 51.894404 kcal Electronic energy + Delta-G solvation = -15514.056458 eV Core-core repulsion = 12948.976193 eV Total energy + Delta-G solvation = -2565.080266 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 249.063 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.18933 -35.92325 -34.77176 -33.95218 -32.79323 -29.87162 -28.16491 -26.86195 -24.55955 -21.27849 -20.66069 -18.39778 -17.32892 -16.71006 -15.91184 -15.68206 -15.15461 -14.35951 -13.90475 -13.26468 -12.86699 -12.56785 -12.45909 -12.17045 -12.11380 -11.87251 -11.73574 -11.66561 -11.48733 -11.34112 -11.16767 -10.74574 -10.69192 -10.68622 -10.16062 -10.14876 -9.67144 -9.13066 -7.59008 -7.27824 -6.60298 -5.20307 1.97138 2.45209 2.63242 2.95996 3.00748 3.13394 3.70094 3.92213 3.98443 4.23379 4.50384 4.59195 4.67155 4.90861 5.07947 5.20190 5.36520 5.45651 5.53941 5.70214 5.79346 5.85183 6.11774 6.28033 6.58147 6.67583 7.00943 7.31308 7.72256 8.16078 8.38822 8.57046 9.06422 9.45434 9.71056 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.008732 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.675591 B = 3205.993475 C = 4164.166315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C 0.305 3.695 3 C -0.296 4.296 4 C 0.353 3.647 5 N -0.545 5.545 6 C 0.441 3.559 7 C -0.480 4.480 8 H 0.098 0.902 9 C 0.100 3.900 10 N -0.733 5.733 11 Si 0.900 3.100 12 H -0.255 1.255 13 H -0.260 1.260 14 H -0.270 1.270 15 N -0.732 5.732 16 C 0.154 3.846 17 H 0.098 0.902 18 C -0.135 4.135 19 C -0.064 4.064 20 S -0.320 6.320 21 C -0.065 4.065 22 H 0.296 0.704 23 H 0.388 0.612 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -1.043 12.465 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.228 5.228 2 C -0.001 4.001 3 C -0.316 4.316 4 C 0.045 3.955 5 N -0.228 5.228 6 C 0.327 3.673 7 C -0.512 4.512 8 H 0.116 0.884 9 C -0.129 4.129 10 N -0.353 5.353 11 Si 0.723 3.277 12 H -0.178 1.178 13 H -0.185 1.185 14 H -0.195 1.195 15 N -0.359 5.359 16 C 0.046 3.954 17 H 0.116 0.884 18 C -0.174 4.174 19 C -0.212 4.212 20 S -0.095 6.095 21 C -0.214 4.214 22 H 0.107 0.893 23 H 0.223 0.777 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.281 0.052 11.456 11.680 hybrid contribution 1.097 -0.886 -0.436 1.476 sum 3.377 -0.834 11.019 11.555 Atomic orbital electron populations 1.81067 1.12441 1.20637 1.08605 1.25453 0.92082 0.90024 0.92536 1.12511 0.81341 1.49346 0.88426 1.24323 0.91306 0.89001 0.90885 1.80963 1.10011 1.19676 1.12142 1.16987 0.90274 0.78760 0.81289 1.19062 0.90466 1.28308 1.13351 0.88374 1.25820 1.01385 0.92082 0.93645 1.69503 1.39745 1.12064 1.14032 0.86328 0.81062 0.79616 0.80716 1.17844 1.18465 1.19526 1.45189 1.09736 1.76341 1.04683 1.21277 0.97903 0.91994 0.84202 0.88434 1.22652 1.02434 0.99986 0.92355 1.24208 1.05216 0.92243 0.99533 1.87833 1.82707 1.18099 1.20859 1.24597 1.03681 0.99013 0.94120 0.89256 0.77725 0.90039 0.89504 0.89073 0.87835 0.88663 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -12.86 18.54 41.84 0.78 -12.09 15 2 C 0.30 7.03 14.12 -22.47 -0.32 6.71 15 3 C -0.30 -6.77 5.40 -104.94 -0.57 -7.33 15 4 C 0.35 8.75 11.49 -22.47 -0.26 8.49 15 5 N -0.55 -14.02 18.52 41.84 0.77 -13.25 15 6 C 0.44 8.93 6.20 -83.60 -0.52 8.41 15 7 C -0.48 -9.73 7.59 -38.33 -0.29 -10.02 15 8 H 0.10 1.81 6.76 -52.49 -0.35 1.46 15 9 C 0.10 2.14 3.94 -17.21 -0.07 2.07 15 10 N -0.73 -16.74 11.22 55.59 0.62 -16.11 15 11 Si 0.90 17.01 29.62 -169.99 -5.04 11.98 15 12 H -0.26 -4.61 7.11 56.52 0.40 -4.21 15 13 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 14 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 15 N -0.73 -12.23 4.91 -51.59 -0.25 -12.49 15 16 C 0.15 2.10 2.84 -67.59 -0.19 1.91 15 17 H 0.10 1.32 6.36 -51.93 -0.33 0.99 15 18 C -0.13 -1.45 5.98 -25.62 -0.15 -1.60 15 19 C -0.06 -0.63 7.52 38.30 0.29 -0.34 15 20 S -0.32 -4.36 23.23 -107.50 -2.50 -6.85 15 21 C -0.06 -0.94 7.09 37.52 0.27 -0.67 15 22 H 0.30 6.49 8.29 -40.82 -0.34 6.16 15 23 H 0.39 6.50 7.19 -40.82 -0.29 6.20 15 24 H 0.08 0.92 7.70 -51.93 -0.40 0.52 15 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 15 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 29 H 0.11 1.88 7.89 -51.93 -0.41 1.47 15 LS Contribution 276.28 15.07 4.16 4.16 Total: -1.00 -25.95 276.28 -5.87 -31.82 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -2.61 Total: 5.21 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -1.81 Total: 7.62 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 1.92 Total: -53.93 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.04 Total: 11.98 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -2.50 Total: -6.85 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -25.95 -5.87 -31.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255270723.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.714 kcal (2) G-P(sol) polarization free energy of solvation -25.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds