Wall clock time and date at job start Mon Mar 30 2020 18:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46919 * 2 1 4 4 C 1.53006 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46599 * 54.99800 * 4 3 2 6 6 C 1.52996 * 109.47412 * 174.99740 * 4 3 2 7 7 N 1.46499 * 109.47091 * 295.00536 * 4 3 2 8 8 C 1.46498 * 119.99523 * 306.18463 * 7 4 3 9 9 C 1.38819 * 120.00277 * 126.18451 * 7 4 3 10 10 C 1.39802 * 119.58218 * 12.27707 * 9 7 4 11 11 C 1.38601 * 119.48647 * 179.78836 * 10 9 7 12 12 C 1.38383 * 118.67901 * 0.48121 * 11 10 9 13 13 C 1.40555 * 119.15471 * 359.74373 * 12 11 10 14 14 C 1.41319 * 119.78569 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99953 * 0.02790 * 14 13 12 16 16 C 1.40028 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.30744 * 119.99690 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99649 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47271 * 60.00439 * 18 16 14 20 20 H 1.48501 * 109.46749 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47252 * 299.99814 * 18 16 14 22 22 N 1.31950 * 119.58512 * 192.55498 * 9 7 4 23 23 H 1.09000 * 109.47134 * 59.99947 * 1 2 3 24 24 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47395 * 300.00196 * 1 2 3 26 26 H 1.08995 * 109.47198 * 240.00519 * 2 1 3 27 27 H 1.09000 * 109.47134 * 120.00053 * 2 1 3 28 28 H 1.09000 * 109.47414 * 60.00480 * 3 2 1 29 29 H 1.09000 * 109.47261 * 299.99975 * 3 2 1 30 30 H 1.09001 * 109.47623 * 300.00659 * 6 4 3 31 31 H 1.09001 * 109.47273 * 179.97438 * 6 4 3 32 32 H 1.09007 * 109.46789 * 60.00098 * 6 4 3 33 33 H 1.08995 * 109.47527 * 90.00521 * 8 7 4 34 34 H 1.09008 * 109.46725 * 210.00259 * 8 7 4 35 35 H 1.08997 * 109.47458 * 329.99523 * 8 7 4 36 36 H 1.07996 * 120.25756 * 0.02562 * 10 9 7 37 37 H 1.07994 * 120.65553 * 180.22516 * 11 10 9 38 38 H 1.08009 * 120.42268 * 179.76773 * 12 11 10 39 39 H 0.97001 * 119.99372 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0800 2.8796 -0.1251 7 7 4.0578 0.8590 1.2527 8 6 3.5951 1.3898 2.5373 9 6 4.9585 -0.1969 1.2218 10 6 5.5912 -0.5294 0.0203 11 6 6.4934 -1.5812 -0.0073 12 6 6.7337 -2.2809 1.1621 13 6 6.0626 -1.9014 2.3374 14 6 6.2976 -2.6070 3.5390 15 1 6.9913 -3.4346 3.5524 16 6 5.6311 -2.2330 4.7123 17 7 4.7910 -1.2314 4.6959 18 14 5.9423 -3.1653 6.3008 19 1 7.3803 -3.0676 6.6585 20 1 5.1201 -2.5775 7.3888 21 1 5.5734 -4.5920 6.1179 22 7 5.2024 -0.8776 2.3255 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.7170 3.3138 -1.0567 31 1 5.1700 2.8797 -0.1242 32 1 3.7163 3.4692 0.7165 33 1 2.6985 0.8547 2.8499 34 1 4.3759 1.2593 3.2867 35 1 3.3670 2.4504 2.4314 36 1 5.3815 0.0314 -0.8785 37 1 6.9956 -1.8520 -0.9243 38 1 7.4284 -3.1079 1.1718 39 1 4.3290 -0.9726 5.5086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320358975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:14 Heat of formation + Delta-G solvation = 28.570307 kcal Electronic energy + Delta-G solvation = -18601.589737 eV Core-core repulsion = 15929.837292 eV Total energy + Delta-G solvation = -2671.752446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.67327 -36.85497 -33.84885 -33.15002 -31.17390 -30.05596 -28.86450 -26.43272 -26.33669 -24.44695 -21.82876 -21.19621 -20.76972 -19.01935 -17.41830 -16.25534 -15.15419 -14.72220 -14.57267 -14.27109 -13.80315 -13.72676 -13.34242 -12.71708 -12.60618 -12.38889 -11.99438 -11.96788 -11.75877 -11.58988 -11.16716 -11.12002 -11.09426 -10.93308 -10.63400 -10.42054 -10.38492 -10.34649 -10.08312 -9.83359 -9.36313 -8.58217 -7.84542 -7.42503 -6.33844 -6.26086 -4.42465 2.92035 3.12104 3.15041 3.28793 3.33309 4.01095 4.04991 4.87164 4.99881 5.30343 5.33971 5.55762 5.66389 5.75539 5.81779 5.90894 6.04011 6.08173 6.11019 6.14926 6.18354 6.28451 6.31955 6.44303 6.51918 6.64361 6.72279 6.74037 6.82563 6.89678 6.94977 7.15331 7.27042 7.66415 7.88948 8.01807 8.09046 8.43930 8.62382 8.85808 9.17391 10.29333 10.44880 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.007062 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.959809 B = 3963.761578 C = 4442.766257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.125 4.125 4 C 0.154 3.846 5 H 0.087 0.913 6 C -0.162 4.162 7 N -0.614 5.614 8 C 0.121 3.879 9 C 0.414 3.586 10 C -0.367 4.367 11 C -0.032 4.032 12 C -0.319 4.319 13 C 0.291 3.709 14 C -0.435 4.435 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.714 5.714 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 N -0.525 5.525 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 5.389 -5.024 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.164 4.164 4 C 0.049 3.951 5 H 0.105 0.895 6 C -0.221 4.221 7 N -0.332 5.332 8 C -0.023 4.023 9 C 0.175 3.825 10 C -0.392 4.392 11 C -0.057 4.057 12 C -0.342 4.342 13 C 0.164 3.836 14 C -0.467 4.467 15 H 0.099 0.901 16 C -0.152 4.152 17 N -0.335 5.335 18 Si 0.728 3.272 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 N -0.245 5.245 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.073 5.822 -4.100 9.359 hybrid contribution 0.523 -0.633 -0.098 0.827 sum -5.551 5.189 -4.198 8.681 Atomic orbital electron populations 1.21752 0.96607 1.01140 1.01009 1.21451 0.94751 0.96874 1.02852 1.21974 0.95790 0.97178 1.01458 1.20863 0.92564 0.93556 0.88144 0.89458 1.22195 1.01714 0.97193 1.00950 1.45947 1.48083 1.35078 1.04060 1.21173 1.00154 0.94708 0.86227 1.18493 0.87017 0.86599 0.90376 1.20661 1.12350 1.08766 0.97455 1.20579 0.94917 0.93942 0.96221 1.21519 1.10993 1.06831 0.94827 1.18216 0.86191 0.87617 0.91555 1.19519 1.21570 1.13494 0.92091 0.90117 1.26014 0.94111 0.94703 1.00398 1.70142 1.16134 1.19542 1.27719 0.86469 0.79330 0.80552 0.80866 1.19092 1.20404 1.19115 1.68272 1.21691 1.10281 1.24305 0.93380 0.93152 0.93097 0.92515 0.91007 0.92004 0.92019 0.92614 0.92393 0.92806 0.94997 0.90267 0.94674 0.89118 0.89092 0.88892 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.87 5.82 -26.73 -0.16 -2.02 16 3 C -0.13 -1.77 4.56 -26.73 -0.12 -1.89 16 4 C 0.15 2.51 2.45 -67.93 -0.17 2.34 16 5 H 0.09 1.49 5.56 -51.93 -0.29 1.20 16 6 C -0.16 -2.26 9.27 37.16 0.34 -1.92 16 7 N -0.61 -12.48 2.33 -174.05 -0.40 -12.88 16 8 C 0.12 2.37 9.11 59.85 0.55 2.92 16 9 C 0.41 10.13 7.31 -155.33 -1.13 9.00 16 10 C -0.37 -8.54 9.24 -38.86 -0.36 -8.90 16 11 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 12 C -0.32 -8.17 9.83 -38.66 -0.38 -8.55 16 13 C 0.29 8.15 6.55 -85.00 -0.56 7.59 16 14 C -0.43 -11.83 9.14 -37.74 -0.34 -12.17 16 15 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 16 C 0.07 1.86 5.50 -17.34 -0.10 1.77 16 17 N -0.71 -18.72 11.46 55.55 0.64 -18.08 16 18 Si 0.90 18.83 29.56 -169.99 -5.02 13.81 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 N -0.52 -14.39 6.77 -10.33 -0.07 -14.46 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 28 H 0.06 0.88 7.31 -51.93 -0.38 0.50 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.73 6.92 -51.92 -0.36 0.37 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.79 7.59 -51.92 -0.39 1.40 16 35 H 0.03 0.57 6.71 -51.93 -0.35 0.23 16 36 H 0.09 1.89 6.02 -52.49 -0.32 1.58 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.09 2.23 8.06 -52.48 -0.42 1.81 16 39 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -28.62 315.54 -8.83 -37.45 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.26 Total: 3.93 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.46 Total: -14.52 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.16 Total: -45.43 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.62 -8.83 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320358975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.022 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds