Wall clock time and date at job start Mon Mar 30 2020 18:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46527 * 2 1 4 4 C 1.53002 * 109.47333 * 119.99723 * 2 1 3 5 5 H 1.09003 * 109.46748 * 300.00647 * 4 2 1 6 6 C 1.53004 * 109.46595 * 60.00449 * 4 2 1 7 7 N 1.46496 * 109.47112 * 180.02562 * 4 2 1 8 8 C 1.46506 * 119.99759 * 299.99885 * 7 4 2 9 9 C 1.38820 * 120.00404 * 120.00398 * 7 4 2 10 10 C 1.39795 * 119.58802 * 184.72366 * 9 7 4 11 11 C 1.38593 * 119.48914 * 179.78800 * 10 9 7 12 12 C 1.38386 * 118.68263 * 0.47899 * 11 10 9 13 13 C 1.40550 * 119.14914 * 359.74351 * 12 11 10 14 14 C 1.41323 * 119.78473 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00236 * 0.02562 * 14 13 12 16 16 C 1.40027 * 119.99805 * 180.02562 * 14 13 12 17 17 N 1.30743 * 120.00180 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47077 * 89.99685 * 18 16 14 20 20 H 1.48499 * 109.46965 * 209.99307 * 18 16 14 21 21 H 1.48496 * 109.47283 * 329.99551 * 18 16 14 22 22 N 1.31956 * 119.58118 * 4.99688 * 9 7 4 23 23 H 1.08993 * 109.47626 * 299.99682 * 1 2 3 24 24 H 1.09000 * 109.47276 * 60.00569 * 1 2 3 25 25 H 1.09003 * 109.46347 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47626 * 240.00318 * 2 1 3 27 27 H 1.08998 * 109.46928 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47445 * 299.99952 * 3 2 1 29 29 H 1.09004 * 109.47114 * 60.00262 * 3 2 1 30 30 H 1.09000 * 109.46385 * 180.02562 * 6 4 2 31 31 H 1.08998 * 109.47314 * 299.99918 * 6 4 2 32 32 H 1.08993 * 109.47015 * 60.00232 * 6 4 2 33 33 H 1.09001 * 109.47060 * 90.00688 * 8 7 4 34 34 H 1.09004 * 109.47073 * 210.00177 * 8 7 4 35 35 H 1.09000 * 109.47212 * 330.00260 * 8 7 4 36 36 H 1.07995 * 120.25512 * 0.02562 * 10 9 7 37 37 H 1.07997 * 120.65980 * 180.22687 * 11 10 9 38 38 H 1.08001 * 120.42985 * 179.77004 * 12 11 10 39 39 H 0.97006 * 120.00248 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5301 -2.1637 1.2492 7 7 3.5050 -0.7206 1.2495 8 6 4.2379 -1.3547 0.1508 9 6 4.1988 -0.1195 2.2909 10 6 5.5931 -0.0363 2.2341 11 6 6.2834 0.5683 3.2728 12 6 5.5657 1.0655 4.3465 13 6 4.1652 0.9474 4.3475 14 6 3.4190 1.4510 5.4369 15 1 3.9250 1.9251 6.2648 16 6 2.0236 1.3351 5.4428 17 7 1.4109 0.7615 4.4403 18 14 1.0372 2.0014 6.8825 19 1 0.6704 3.4161 6.6187 20 1 -0.1971 1.1936 7.0530 21 1 1.8541 1.9244 8.1202 22 7 3.5342 0.3614 3.3244 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 3.1299 1.4427 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 1.8931 -2.6774 2.1394 31 1 0.4401 -2.1638 1.2492 32 1 1.8935 -2.6775 0.3593 33 1 4.4196 -0.6218 -0.6354 34 1 5.1905 -1.7342 0.5207 35 1 3.6492 -2.1796 -0.2504 36 1 6.1280 -0.4365 1.3856 37 1 7.3602 0.6461 3.2467 38 1 6.0752 1.5388 5.1728 39 1 0.4442 0.6816 4.4442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320604289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:18 Heat of formation + Delta-G solvation = 32.136015 kcal Electronic energy + Delta-G solvation = -19001.501812 eV Core-core repulsion = 16329.903987 eV Total energy + Delta-G solvation = -2671.597825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.69211 -36.96191 -34.03351 -32.98978 -30.41769 -29.85505 -28.82382 -26.72566 -25.50942 -25.23299 -22.67693 -21.18831 -20.15582 -18.64334 -17.37289 -16.26087 -14.92485 -14.78257 -14.35547 -14.19528 -13.86170 -13.51494 -13.21646 -12.89224 -12.38908 -12.22276 -11.89845 -11.83575 -11.70792 -11.56773 -11.25823 -11.17568 -10.96388 -10.71753 -10.55082 -10.38877 -10.37343 -10.27018 -9.88770 -9.71243 -9.36807 -8.62480 -7.84317 -7.40838 -6.32324 -6.29819 -4.43734 2.89914 3.12431 3.15621 3.27896 3.32893 4.00077 4.08062 4.86691 5.29085 5.45270 5.55815 5.71070 5.89462 5.92805 6.00792 6.02457 6.08966 6.16660 6.18155 6.24882 6.29861 6.36441 6.39291 6.51888 6.62167 6.67152 6.80977 6.84114 6.94191 6.95961 6.96540 7.26285 7.36145 7.67838 7.88315 8.01694 8.09975 8.46283 8.62308 8.84766 9.16471 10.27571 10.43279 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.009799 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.982452 B = 2856.731860 C = 3946.373224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.135 4.135 4 C 0.145 3.855 5 H 0.140 0.860 6 C -0.157 4.157 7 N -0.613 5.613 8 C 0.107 3.893 9 C 0.414 3.586 10 C -0.367 4.367 11 C -0.032 4.032 12 C -0.318 4.318 13 C 0.293 3.707 14 C -0.434 4.434 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.717 5.717 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.263 1.263 22 N -0.526 5.526 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -2.543 -6.746 7.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.192 4.192 4 C 0.041 3.959 5 H 0.158 0.842 6 C -0.216 4.216 7 N -0.329 5.329 8 C -0.038 4.038 9 C 0.176 3.824 10 C -0.393 4.393 11 C -0.056 4.056 12 C -0.341 4.341 13 C 0.165 3.835 14 C -0.467 4.467 15 H 0.099 0.901 16 C -0.150 4.150 17 N -0.339 5.339 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.187 1.187 22 N -0.247 5.247 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.382 -2.724 -6.883 8.138 hybrid contribution 0.609 0.282 0.450 0.808 sum -2.773 -2.443 -6.433 7.419 Atomic orbital electron populations 1.21839 0.95575 1.01234 1.01442 1.21445 0.95148 0.96909 0.98639 1.21666 1.01307 0.95618 1.00601 1.21158 0.79966 0.94693 1.00060 0.84227 1.22176 1.00428 0.98116 1.00847 1.45977 1.04041 1.61233 1.21674 1.21340 0.96636 0.96183 0.89634 1.18495 0.87206 0.89055 0.87632 1.20649 0.93424 1.21315 1.03936 1.20580 0.96974 0.94725 0.93336 1.21521 0.95706 1.15633 1.01268 1.18209 0.88243 0.87074 0.89930 1.19545 0.91134 1.32650 1.03330 0.90087 1.25983 0.98510 0.94032 0.96437 1.70067 1.09163 1.27486 1.27221 0.86415 0.79299 0.79440 0.82119 1.19584 1.20282 1.18715 1.68180 1.36219 1.19154 1.01181 0.92242 0.93555 0.92873 0.92731 0.92757 0.94410 0.92253 0.92754 0.92415 0.94013 0.94952 0.92127 0.92796 0.89130 0.89088 0.88877 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.84 37.16 0.33 -1.72 16 2 C -0.10 -1.67 2.37 -90.61 -0.21 -1.88 16 3 C -0.13 -2.39 9.04 37.16 0.34 -2.05 16 4 C 0.15 2.79 2.25 -67.93 -0.15 2.63 16 5 H 0.14 3.21 5.83 -51.93 -0.30 2.91 16 6 C -0.16 -2.63 8.82 37.16 0.33 -2.31 16 7 N -0.61 -12.51 2.11 -174.04 -0.37 -12.88 16 8 C 0.11 1.76 9.11 59.85 0.55 2.31 16 9 C 0.41 10.13 7.38 -155.33 -1.15 8.98 16 10 C -0.37 -8.60 9.20 -38.87 -0.36 -8.96 16 11 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 12 C -0.32 -8.12 9.83 -38.66 -0.38 -8.50 16 13 C 0.29 8.09 6.55 -85.00 -0.56 7.53 16 14 C -0.43 -11.66 9.14 -37.74 -0.34 -12.00 16 15 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 16 C 0.07 1.88 5.50 -17.34 -0.10 1.79 16 17 N -0.72 -18.31 10.50 55.55 0.58 -17.72 16 18 Si 0.90 18.60 29.56 -169.99 -5.02 13.57 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 N -0.53 -14.19 6.37 -10.33 -0.07 -14.26 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.69 6.43 -51.93 -0.33 0.36 16 26 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 27 H 0.05 1.05 7.60 -51.93 -0.39 0.66 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 32 H 0.04 0.62 6.66 -51.93 -0.35 0.27 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.99 6.36 -51.93 -0.33 0.66 16 35 H 0.05 0.77 6.43 -51.93 -0.33 0.44 16 36 H 0.09 1.90 6.24 -52.49 -0.33 1.57 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.27 6.24 8.29 -40.82 -0.34 5.91 16 LS Contribution 308.79 15.07 4.65 4.65 Total: -1.00 -28.05 308.79 -8.36 -36.42 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.03 Total: 5.55 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.11 Total: -15.33 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.15 Total: -44.86 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.05 -8.36 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320604289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.551 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds