Wall clock time and date at job start Mon Mar 30 2020 18:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46527 * 2 1 4 4 C 1.53002 * 109.47333 * 119.99723 * 2 1 3 5 5 H 1.09003 * 109.46748 * 300.00647 * 4 2 1 6 6 C 1.53004 * 109.46595 * 60.00449 * 4 2 1 7 7 N 1.46496 * 109.47112 * 180.02562 * 4 2 1 8 8 C 1.46506 * 119.99759 * 299.99885 * 7 4 2 9 9 C 1.38820 * 120.00404 * 120.00398 * 7 4 2 10 10 C 1.39795 * 119.58802 * 184.72366 * 9 7 4 11 11 C 1.38593 * 119.48914 * 179.78800 * 10 9 7 12 12 C 1.38386 * 118.68263 * 0.47899 * 11 10 9 13 13 C 1.40550 * 119.14914 * 359.74351 * 12 11 10 14 14 C 1.41323 * 119.78473 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00236 * 0.02562 * 14 13 12 16 16 C 1.40027 * 119.99805 * 180.02562 * 14 13 12 17 17 N 1.30743 * 120.00180 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47077 * 89.99685 * 18 16 14 20 20 H 1.48499 * 109.46965 * 209.99307 * 18 16 14 21 21 H 1.48496 * 109.47283 * 329.99551 * 18 16 14 22 22 N 1.31956 * 119.58118 * 4.99688 * 9 7 4 23 23 H 1.08993 * 109.47626 * 299.99682 * 1 2 3 24 24 H 1.09000 * 109.47276 * 60.00569 * 1 2 3 25 25 H 1.09003 * 109.46347 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47626 * 240.00318 * 2 1 3 27 27 H 1.08998 * 109.46928 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47445 * 299.99952 * 3 2 1 29 29 H 1.09004 * 109.47114 * 60.00262 * 3 2 1 30 30 H 1.09000 * 109.46385 * 180.02562 * 6 4 2 31 31 H 1.08998 * 109.47314 * 299.99918 * 6 4 2 32 32 H 1.08993 * 109.47015 * 60.00232 * 6 4 2 33 33 H 1.09001 * 109.47060 * 90.00688 * 8 7 4 34 34 H 1.09004 * 109.47073 * 210.00177 * 8 7 4 35 35 H 1.09000 * 109.47212 * 330.00260 * 8 7 4 36 36 H 1.07995 * 120.25512 * 0.02562 * 10 9 7 37 37 H 1.07997 * 120.65980 * 180.22687 * 11 10 9 38 38 H 1.08001 * 120.42985 * 179.77004 * 12 11 10 39 39 H 0.97006 * 120.00248 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5301 -2.1637 1.2492 7 7 3.5050 -0.7206 1.2495 8 6 4.2379 -1.3547 0.1508 9 6 4.1988 -0.1195 2.2909 10 6 5.5931 -0.0363 2.2341 11 6 6.2834 0.5683 3.2728 12 6 5.5657 1.0655 4.3465 13 6 4.1652 0.9474 4.3475 14 6 3.4190 1.4510 5.4369 15 1 3.9250 1.9251 6.2648 16 6 2.0236 1.3351 5.4428 17 7 1.4109 0.7615 4.4403 18 14 1.0372 2.0014 6.8825 19 1 0.6704 3.4161 6.6187 20 1 -0.1971 1.1936 7.0530 21 1 1.8541 1.9244 8.1202 22 7 3.5342 0.3614 3.3244 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 3.1299 1.4427 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 1.8931 -2.6774 2.1394 31 1 0.4401 -2.1638 1.2492 32 1 1.8935 -2.6775 0.3593 33 1 4.4196 -0.6218 -0.6354 34 1 5.1905 -1.7342 0.5207 35 1 3.6492 -2.1796 -0.2504 36 1 6.1280 -0.4365 1.3856 37 1 7.3602 0.6461 3.2467 38 1 6.0752 1.5388 5.1728 39 1 0.4442 0.6816 4.4442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320604289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:18 Heat of formation + Delta-G solvation = 19.089081 kcal Electronic energy + Delta-G solvation = -19002.067569 eV Core-core repulsion = 16329.903987 eV Total energy + Delta-G solvation = -2672.163582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40820 -38.58129 -35.73777 -34.67712 -32.29248 -31.45375 -30.47194 -28.05207 -27.23846 -26.84710 -24.22780 -23.01132 -21.86108 -20.11697 -19.24086 -17.95311 -16.62379 -16.47194 -15.98615 -15.83526 -15.31951 -15.13077 -14.81203 -14.41122 -13.99517 -13.86241 -13.52724 -13.24590 -13.07095 -12.85478 -12.81429 -12.75724 -12.67803 -12.45108 -12.12538 -12.08808 -11.77303 -11.70004 -11.62352 -11.21950 -11.11243 -10.39439 -9.74771 -9.30127 -8.18472 -8.03299 -6.42675 1.09827 1.38858 1.42328 1.54056 1.59528 2.26624 2.53314 2.96539 3.93200 4.07398 4.16624 4.20758 4.34390 4.46485 4.60434 4.64592 4.72154 4.76022 4.81673 4.83291 4.91334 5.00262 5.02162 5.03393 5.07600 5.09105 5.12801 5.22840 5.37115 5.39851 5.41423 5.58472 5.70217 5.84909 6.01300 6.17104 6.23658 6.72888 6.78622 6.96239 7.27331 8.39594 8.55139 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.009799 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.982452 B = 2856.731860 C = 3946.373224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.126 4.126 4 C 0.137 3.863 5 H 0.099 0.901 6 C -0.147 4.147 7 N -0.613 5.613 8 C 0.102 3.898 9 C 0.397 3.603 10 C -0.373 4.373 11 C -0.031 4.031 12 C -0.350 4.350 13 C 0.259 3.741 14 C -0.471 4.471 15 H 0.080 0.920 16 C 0.032 3.968 17 N -0.740 5.740 18 Si 0.979 3.021 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.261 1.261 22 N -0.549 5.549 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 -3.336 -8.397 9.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 C -0.184 4.184 4 C 0.033 3.967 5 H 0.117 0.883 6 C -0.205 4.205 7 N -0.328 5.328 8 C -0.041 4.041 9 C 0.158 3.842 10 C -0.398 4.398 11 C -0.055 4.055 12 C -0.373 4.373 13 C 0.131 3.869 14 C -0.503 4.503 15 H 0.099 0.901 16 C -0.191 4.191 17 N -0.362 5.362 18 Si 0.800 3.200 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.185 1.185 22 N -0.272 5.272 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.124 -3.540 -8.577 10.154 hybrid contribution 0.891 0.488 0.844 1.321 sum -3.232 -3.052 -7.733 8.920 Atomic orbital electron populations 1.21796 0.93787 1.02413 1.01557 1.21385 0.96553 0.95476 0.97892 1.21581 0.99747 0.96881 1.00152 1.21196 0.79429 0.96166 0.99896 0.88342 1.22071 1.01441 0.96225 1.00769 1.46225 1.04778 1.60464 1.21363 1.21564 0.96827 0.97091 0.88611 1.18959 0.88217 0.88954 0.88113 1.21008 0.93387 1.20784 1.04646 1.20959 0.98675 0.93432 0.92443 1.21663 0.95422 1.17492 1.02682 1.18686 0.89526 0.87895 0.90774 1.19847 0.92559 1.34139 1.03751 0.90136 1.26801 0.98880 0.94101 0.99278 1.70174 1.09702 1.27635 1.28665 0.85267 0.77658 0.78781 0.78302 1.19068 1.19180 1.18485 1.68187 1.37024 1.20036 1.01910 0.94193 0.91388 0.91164 0.90449 0.94943 0.91685 0.95729 0.95346 0.90732 0.91398 0.93694 0.92063 0.90051 0.86477 0.85762 0.88477 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.84 71.98 0.64 -2.98 16 2 C -0.09 -2.88 2.37 -10.79 -0.03 -2.91 16 3 C -0.13 -4.40 9.04 71.98 0.65 -3.75 16 4 C 0.14 5.17 2.25 44.99 0.10 5.27 16 5 H 0.10 4.65 5.83 -2.39 -0.01 4.64 16 6 C -0.15 -4.65 8.82 71.98 0.63 -4.01 16 7 N -0.61 -24.54 2.11 -704.54 -1.48 -26.02 16 8 C 0.10 3.10 9.11 127.77 1.16 4.26 16 9 C 0.40 19.65 7.38 133.42 0.98 20.63 16 10 C -0.37 -17.26 9.20 22.73 0.21 -17.05 16 11 C -0.03 -1.45 10.15 22.39 0.23 -1.22 16 12 C -0.35 -18.41 9.83 22.87 0.22 -18.18 16 13 C 0.26 14.93 6.55 40.18 0.26 15.20 16 14 C -0.47 -26.42 9.14 23.46 0.21 -26.21 16 15 H 0.08 4.31 7.85 -2.91 -0.02 4.28 16 16 C 0.03 1.64 5.50 85.29 0.47 2.11 16 17 N -0.74 -39.11 10.50 21.84 0.23 -38.88 16 18 Si 0.98 38.95 29.56 68.60 2.03 40.98 16 19 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 22 N -0.55 -30.75 6.37 -186.59 -1.19 -31.94 16 23 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.60 6.43 -2.39 -0.02 1.59 16 26 H 0.08 2.07 7.67 -2.39 -0.02 2.05 16 27 H 0.03 1.24 7.60 -2.39 -0.02 1.22 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 2.08 6.43 -2.39 -0.02 2.06 16 32 H 0.07 1.77 6.66 -2.39 -0.02 1.75 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.85 6.36 -2.38 -0.02 1.83 16 35 H 0.08 2.02 6.43 -2.39 -0.02 2.00 16 36 H 0.12 4.68 6.24 -2.91 -0.02 4.67 16 37 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 38 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 39 H 0.27 13.16 8.29 -92.70 -0.77 12.39 16 Total: -1.00 -63.67 308.79 6.36 -57.31 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 1.02 Total: 27.40 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 5.75 Total: -28.86 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -2.44 Total: -96.84 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -63.67 6.36 -57.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320604289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.402 kcal (2) G-P(sol) polarization free energy of solvation -63.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds