Wall clock time and date at job start Mon Mar 30 2020 18:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.53000 * 109.47223 * 120.00172 * 2 1 3 5 5 H 1.09000 * 109.47008 * 304.05017 * 4 2 1 6 6 C 1.52997 * 109.47361 * 184.05348 * 4 2 1 7 7 N 1.46499 * 109.47312 * 64.04959 * 4 2 1 8 8 C 1.46505 * 120.00015 * 64.33786 * 7 4 2 9 9 C 1.38826 * 120.00411 * 244.34111 * 7 4 2 10 10 C 1.39790 * 119.58426 * 184.99911 * 9 7 4 11 11 C 1.38598 * 119.48777 * 179.97438 * 10 9 7 12 12 C 1.38385 * 118.68336 * 0.24784 * 11 10 9 13 13 C 1.40563 * 119.14446 * 359.49277 * 12 11 10 14 14 C 1.41321 * 119.78222 * 180.24790 * 13 12 11 15 15 H 1.08002 * 119.99910 * 0.26388 * 14 13 12 16 16 C 1.40017 * 119.99948 * 180.27415 * 14 13 12 17 17 N 1.30747 * 120.00171 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00139 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47191 * 59.99337 * 18 16 14 20 20 H 1.48496 * 109.47380 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47179 * 299.99680 * 18 16 14 22 22 N 1.31957 * 119.57967 * 4.97279 * 9 7 4 23 23 H 1.08996 * 109.46942 * 299.99927 * 1 2 3 24 24 H 1.09000 * 109.46975 * 60.00078 * 1 2 3 25 25 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46772 * 239.99572 * 2 1 3 27 27 H 1.08998 * 109.47164 * 55.66044 * 3 2 1 28 28 H 1.09006 * 109.47141 * 175.66709 * 3 2 1 29 29 H 1.08998 * 109.47200 * 295.66290 * 3 2 1 30 30 H 1.09000 * 109.46789 * 299.99802 * 6 4 2 31 31 H 1.09003 * 109.47159 * 59.99822 * 6 4 2 32 32 H 1.08997 * 109.47529 * 180.02562 * 6 4 2 33 33 H 1.09005 * 109.47357 * 264.30976 * 8 7 4 34 34 H 1.09004 * 109.46794 * 24.30654 * 8 7 4 35 35 H 1.08996 * 109.47346 * 144.30845 * 8 7 4 36 36 H 1.07998 * 120.25894 * 0.02562 * 10 9 7 37 37 H 1.08002 * 120.65662 * 179.97438 * 11 10 9 38 38 H 1.08000 * 120.42693 * 179.74449 * 12 11 10 39 39 H 0.96994 * 120.00239 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6186 -0.2511 2.1377 6 6 3.5666 -0.6336 1.3013 7 7 1.6330 -2.1278 1.2014 8 6 2.1507 -3.0048 0.1483 9 6 0.7567 -2.6296 2.1540 10 6 0.4559 -3.9947 2.1640 11 6 -0.4188 -4.4937 3.1163 12 6 -0.9753 -3.6171 4.0311 13 6 -0.6292 -2.2560 3.9730 14 6 -1.1854 -1.3499 4.9039 15 1 -1.8707 -1.7047 5.6595 16 6 -0.8482 0.0079 4.8466 17 7 -0.0183 0.4374 3.9321 18 14 -1.5840 1.2058 6.0767 19 1 -1.2022 0.7990 7.4530 20 1 -1.0708 2.5724 5.8045 21 1 -3.0636 1.1981 5.9508 22 7 0.2185 -1.8120 3.0390 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6146 1.9783 0.8485 28 1 3.1273 1.4434 0.0776 29 1 1.7416 1.9334 -0.9263 30 1 3.9880 -1.1038 0.4128 31 1 3.8694 0.4129 1.3369 32 1 3.9300 -1.1478 2.1910 33 1 1.4338 -3.0507 -0.6715 34 1 3.0983 -2.6109 -0.2193 35 1 2.3054 -4.0054 0.5521 36 1 0.9024 -4.6557 1.4359 37 1 -0.6647 -5.5451 3.1410 38 1 -1.6635 -3.9748 4.7826 39 1 0.2155 1.3778 3.8926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320604290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:21 Heat of formation + Delta-G solvation = 33.576392 kcal Electronic energy + Delta-G solvation = -19052.805084 eV Core-core repulsion = 16381.269718 eV Total energy + Delta-G solvation = -2671.535365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.68545 -36.93906 -34.04352 -32.97551 -30.40955 -29.87519 -28.75623 -26.72280 -25.50007 -25.20905 -22.65256 -21.16442 -20.14363 -18.61468 -17.36239 -16.26555 -14.93732 -14.78544 -14.36800 -14.20219 -13.80024 -13.41903 -13.23387 -12.94414 -12.39501 -12.19385 -11.95321 -11.78458 -11.60696 -11.51402 -11.24516 -11.15289 -10.98289 -10.65577 -10.54514 -10.38191 -10.30338 -10.22505 -9.89689 -9.70819 -9.34654 -8.60897 -7.83809 -7.40142 -6.32184 -6.28740 -4.43180 2.91763 3.11523 3.14669 3.28321 3.33660 4.00379 4.08293 4.87225 5.32950 5.50545 5.58123 5.71670 5.86361 5.92992 6.00287 6.02656 6.13926 6.17195 6.20686 6.24189 6.32792 6.38826 6.47339 6.56749 6.63586 6.73952 6.82432 6.86622 6.94560 6.97148 7.10554 7.26807 7.36816 7.68050 7.88701 8.02001 8.10010 8.46327 8.62604 8.85150 9.16918 10.28038 10.43664 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.010142 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.954173 B = 2760.163328 C = 3912.268276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.144 4.144 4 C 0.146 3.854 5 H 0.138 0.862 6 C -0.161 4.161 7 N -0.613 5.613 8 C 0.106 3.894 9 C 0.414 3.586 10 C -0.368 4.368 11 C -0.032 4.032 12 C -0.319 4.319 13 C 0.293 3.707 14 C -0.434 4.434 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.716 5.716 18 Si 0.902 3.098 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.267 1.267 22 N -0.524 5.524 23 H 0.067 0.933 24 H 0.032 0.968 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 1.390 -5.897 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 C -0.202 4.202 4 C 0.042 3.958 5 H 0.156 0.844 6 C -0.220 4.220 7 N -0.330 5.330 8 C -0.038 4.038 9 C 0.176 3.824 10 C -0.394 4.394 11 C -0.056 4.056 12 C -0.342 4.342 13 C 0.166 3.834 14 C -0.467 4.467 15 H 0.098 0.902 16 C -0.149 4.149 17 N -0.338 5.338 18 Si 0.727 3.273 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 N -0.245 5.245 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.687 2.483 -6.075 8.064 hybrid contribution -0.510 -0.528 0.398 0.835 sum 4.177 1.955 -5.677 7.314 Atomic orbital electron populations 1.21638 0.94773 1.01787 1.00715 1.21406 0.96648 0.95426 0.98348 1.21876 1.00531 0.96520 1.01283 1.21135 0.92327 0.81927 1.00389 0.84395 1.22250 0.97695 1.01123 1.00895 1.45983 1.49248 1.08692 1.29056 1.21343 0.97483 0.94601 0.90405 1.18492 0.87625 0.88212 0.88096 1.20654 1.14879 0.94714 1.09121 1.20579 0.94376 0.96931 0.93740 1.21526 1.11236 0.95564 1.05839 1.18201 0.87097 0.89261 0.88874 1.19501 1.23238 0.91679 1.12243 0.90173 1.25967 0.94216 0.99184 0.95541 1.70059 1.22331 1.15034 1.26392 0.86484 0.80229 0.79138 0.81453 1.19147 1.20386 1.19145 1.68190 1.15665 1.33753 1.06922 0.91411 0.94902 0.93023 0.93005 0.92253 0.92873 0.93670 0.93760 0.92161 0.92942 0.94956 0.92489 0.92383 0.89124 0.89112 0.88903 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.07 37.16 0.34 -2.13 16 2 C -0.10 -1.66 2.50 -90.62 -0.23 -1.88 16 3 C -0.14 -2.10 8.87 37.16 0.33 -1.77 16 4 C 0.15 2.80 2.24 -67.93 -0.15 2.64 16 5 H 0.14 3.15 5.91 -51.93 -0.31 2.85 16 6 C -0.16 -2.62 8.65 37.16 0.32 -2.29 16 7 N -0.61 -12.51 2.28 -174.05 -0.40 -12.91 16 8 C 0.11 1.75 9.25 59.85 0.55 2.31 16 9 C 0.41 10.09 7.38 -155.32 -1.15 8.94 16 10 C -0.37 -8.62 9.28 -38.87 -0.36 -8.98 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.32 -8.11 9.83 -38.65 -0.38 -8.49 16 13 C 0.29 8.06 6.55 -85.00 -0.56 7.50 16 14 C -0.43 -11.60 9.14 -37.74 -0.34 -11.95 16 15 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 16 C 0.08 1.89 5.50 -17.35 -0.10 1.79 16 17 N -0.72 -18.05 10.55 55.55 0.59 -17.47 16 18 Si 0.90 18.54 29.56 -169.99 -5.02 13.51 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 N -0.52 -14.01 6.37 -10.33 -0.07 -14.07 16 23 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 1.08 7.72 -51.93 -0.40 0.68 16 26 H 0.05 0.83 7.66 -51.93 -0.40 0.43 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.70 6.11 -51.93 -0.32 0.38 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.64 6.51 -51.93 -0.34 0.30 16 31 H 0.06 0.88 6.26 -51.93 -0.33 0.55 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 35 H 0.06 0.94 6.27 -51.93 -0.33 0.62 16 36 H 0.09 1.91 6.13 -52.49 -0.32 1.58 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.27 6.21 8.29 -40.82 -0.34 5.87 16 LS Contribution 308.37 15.07 4.65 4.65 Total: -1.00 -27.76 308.37 -8.36 -36.12 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.98 Total: 5.63 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.12 Total: -15.46 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.12 Total: -44.45 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.76 -8.36 -36.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320604290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.696 kcal (2) G-P(sol) polarization free energy of solvation -27.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds