Wall clock time and date at job start Mon Mar 30 2020 18:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.53000 * 109.47223 * 120.00172 * 2 1 3 5 5 H 1.09000 * 109.47008 * 304.05017 * 4 2 1 6 6 C 1.52997 * 109.47361 * 184.05348 * 4 2 1 7 7 N 1.46499 * 109.47312 * 64.04959 * 4 2 1 8 8 C 1.46505 * 120.00015 * 64.33786 * 7 4 2 9 9 C 1.38826 * 120.00411 * 244.34111 * 7 4 2 10 10 C 1.39790 * 119.58426 * 184.99911 * 9 7 4 11 11 C 1.38598 * 119.48777 * 179.97438 * 10 9 7 12 12 C 1.38385 * 118.68336 * 0.24784 * 11 10 9 13 13 C 1.40563 * 119.14446 * 359.49277 * 12 11 10 14 14 C 1.41321 * 119.78222 * 180.24790 * 13 12 11 15 15 H 1.08002 * 119.99910 * 0.26388 * 14 13 12 16 16 C 1.40017 * 119.99948 * 180.27415 * 14 13 12 17 17 N 1.30747 * 120.00171 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00139 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47191 * 59.99337 * 18 16 14 20 20 H 1.48496 * 109.47380 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47179 * 299.99680 * 18 16 14 22 22 N 1.31957 * 119.57967 * 4.97279 * 9 7 4 23 23 H 1.08996 * 109.46942 * 299.99927 * 1 2 3 24 24 H 1.09000 * 109.46975 * 60.00078 * 1 2 3 25 25 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46772 * 239.99572 * 2 1 3 27 27 H 1.08998 * 109.47164 * 55.66044 * 3 2 1 28 28 H 1.09006 * 109.47141 * 175.66709 * 3 2 1 29 29 H 1.08998 * 109.47200 * 295.66290 * 3 2 1 30 30 H 1.09000 * 109.46789 * 299.99802 * 6 4 2 31 31 H 1.09003 * 109.47159 * 59.99822 * 6 4 2 32 32 H 1.08997 * 109.47529 * 180.02562 * 6 4 2 33 33 H 1.09005 * 109.47357 * 264.30976 * 8 7 4 34 34 H 1.09004 * 109.46794 * 24.30654 * 8 7 4 35 35 H 1.08996 * 109.47346 * 144.30845 * 8 7 4 36 36 H 1.07998 * 120.25894 * 0.02562 * 10 9 7 37 37 H 1.08002 * 120.65662 * 179.97438 * 11 10 9 38 38 H 1.08000 * 120.42693 * 179.74449 * 12 11 10 39 39 H 0.96994 * 120.00239 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6186 -0.2511 2.1377 6 6 3.5666 -0.6336 1.3013 7 7 1.6330 -2.1278 1.2014 8 6 2.1507 -3.0048 0.1483 9 6 0.7567 -2.6296 2.1540 10 6 0.4559 -3.9947 2.1640 11 6 -0.4188 -4.4937 3.1163 12 6 -0.9753 -3.6171 4.0311 13 6 -0.6292 -2.2560 3.9730 14 6 -1.1854 -1.3499 4.9039 15 1 -1.8707 -1.7047 5.6595 16 6 -0.8482 0.0079 4.8466 17 7 -0.0183 0.4374 3.9321 18 14 -1.5840 1.2058 6.0767 19 1 -1.2022 0.7990 7.4530 20 1 -1.0708 2.5724 5.8045 21 1 -3.0636 1.1981 5.9508 22 7 0.2185 -1.8120 3.0390 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6146 1.9783 0.8485 28 1 3.1273 1.4434 0.0776 29 1 1.7416 1.9334 -0.9263 30 1 3.9880 -1.1038 0.4128 31 1 3.8694 0.4129 1.3369 32 1 3.9300 -1.1478 2.1910 33 1 1.4338 -3.0507 -0.6715 34 1 3.0983 -2.6109 -0.2193 35 1 2.3054 -4.0054 0.5521 36 1 0.9024 -4.6557 1.4359 37 1 -0.6647 -5.5451 3.1410 38 1 -1.6635 -3.9748 4.7826 39 1 0.2155 1.3778 3.8926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320604290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:20 Heat of formation + Delta-G solvation = 20.709527 kcal Electronic energy + Delta-G solvation = -19053.363033 eV Core-core repulsion = 16381.269718 eV Total energy + Delta-G solvation = -2672.093315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39920 -38.56088 -35.74677 -34.66798 -32.27949 -31.48149 -30.38547 -28.08375 -27.22787 -26.81295 -24.20941 -22.98580 -21.85314 -20.09614 -19.22118 -17.95325 -16.62455 -16.46869 -15.98655 -15.89124 -15.28254 -15.01621 -14.79623 -14.46490 -13.99923 -13.83124 -13.59867 -13.20423 -13.00591 -12.82604 -12.77923 -12.75174 -12.68569 -12.44068 -12.10711 -12.03425 -11.75792 -11.69339 -11.59997 -11.20339 -11.10415 -10.37289 -9.73554 -9.28585 -8.16951 -8.02366 -6.41216 1.11474 1.39601 1.42838 1.52764 1.60638 2.27328 2.53979 2.97813 3.95916 4.08805 4.19028 4.20845 4.35679 4.46962 4.60287 4.64749 4.72249 4.76271 4.83355 4.85702 4.91977 5.01901 5.03957 5.05595 5.10786 5.11097 5.14397 5.25482 5.38164 5.40052 5.47094 5.61216 5.71982 5.85699 6.02125 6.17805 6.24323 6.73502 6.79519 6.97173 7.28337 8.40615 8.56102 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.010142 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.954173 B = 2760.163328 C = 3912.268276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.138 4.138 4 C 0.138 3.862 5 H 0.097 0.903 6 C -0.151 4.151 7 N -0.613 5.613 8 C 0.102 3.898 9 C 0.397 3.603 10 C -0.374 4.374 11 C -0.031 4.031 12 C -0.350 4.350 13 C 0.259 3.741 14 C -0.471 4.471 15 H 0.079 0.921 16 C 0.033 3.967 17 N -0.735 5.735 18 Si 0.977 3.023 19 H -0.264 1.264 20 H -0.267 1.267 21 H -0.265 1.265 22 N -0.545 5.545 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 1.981 -7.377 9.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.110 4.110 3 C -0.196 4.196 4 C 0.034 3.966 5 H 0.115 0.885 6 C -0.209 4.209 7 N -0.329 5.329 8 C -0.041 4.041 9 C 0.157 3.843 10 C -0.400 4.400 11 C -0.055 4.055 12 C -0.374 4.374 13 C 0.132 3.868 14 C -0.503 4.503 15 H 0.098 0.902 16 C -0.190 4.190 17 N -0.357 5.357 18 Si 0.798 3.202 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.189 1.189 22 N -0.267 5.267 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.115 0.885 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.979 3.062 -7.592 10.137 hybrid contribution -0.859 -0.771 0.758 1.381 sum 5.120 2.291 -6.834 8.841 Atomic orbital electron populations 1.21519 0.96605 0.99619 1.00122 1.21347 0.94890 0.96981 0.97819 1.21824 1.01573 0.94594 1.01599 1.21176 0.94164 0.81273 0.99949 0.88457 1.22147 0.95219 1.02371 1.01165 1.46237 1.48138 1.09775 1.28762 1.21563 0.98851 0.94286 0.89416 1.18957 0.88032 0.88824 0.88489 1.21014 1.14614 0.94910 1.09454 1.20951 0.93505 0.98313 0.92779 1.21668 1.12755 0.95567 1.07360 1.18673 0.87967 0.90475 0.89723 1.19802 1.24405 0.93108 1.12974 0.90239 1.26759 0.94546 1.00233 0.97441 1.70165 1.22598 1.15657 1.27268 0.85353 0.79209 0.76917 0.78701 1.18842 1.19127 1.18933 1.68202 1.16208 1.34686 1.07578 0.94858 0.92482 0.95901 0.91001 0.93989 0.90938 0.91661 0.91191 0.90421 0.94838 0.94204 0.89540 0.92124 0.86528 0.85855 0.88549 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 9.07 71.98 0.65 -3.87 16 2 C -0.09 -2.88 2.50 -10.79 -0.03 -2.91 16 3 C -0.14 -3.66 8.87 71.98 0.64 -3.02 16 4 C 0.14 5.17 2.24 44.99 0.10 5.27 16 5 H 0.10 4.55 5.91 -2.39 -0.01 4.53 16 6 C -0.15 -4.54 8.65 71.98 0.62 -3.92 16 7 N -0.61 -24.52 2.28 -704.56 -1.61 -26.13 16 8 C 0.10 3.10 9.25 127.77 1.18 4.28 16 9 C 0.40 19.56 7.38 133.41 0.98 20.55 16 10 C -0.37 -17.37 9.28 22.73 0.21 -17.16 16 11 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 12 C -0.35 -18.45 9.83 22.87 0.22 -18.23 16 13 C 0.26 14.88 6.55 40.18 0.26 15.15 16 14 C -0.47 -26.30 9.14 23.46 0.21 -26.08 16 15 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 16 C 0.03 1.69 5.50 85.29 0.47 2.16 16 17 N -0.74 -38.35 10.55 21.83 0.23 -38.12 16 18 Si 0.98 38.80 29.56 68.60 2.03 40.82 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 N -0.54 -30.19 6.37 -186.58 -1.19 -31.38 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.02 0.94 7.72 -2.39 -0.02 0.92 16 26 H 0.07 2.02 7.66 -2.39 -0.02 2.01 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.64 6.11 -2.38 -0.01 1.62 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.73 6.51 -2.39 -0.02 1.71 16 31 H 0.08 2.05 6.26 -2.39 -0.01 2.03 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.09 2.11 6.21 -2.38 -0.01 2.10 16 35 H 0.06 1.81 6.27 -2.39 -0.01 1.80 16 36 H 0.12 4.68 6.13 -2.91 -0.02 4.67 16 37 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.27 13.04 8.29 -92.71 -0.77 12.27 16 Total: -1.00 -62.97 308.37 6.25 -56.72 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 1.02 Total: 27.11 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 5.76 Total: -29.03 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -2.57 Total: -95.63 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.82 kcal Total: -62.97 6.25 -56.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320604290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.432 kcal (2) G-P(sol) polarization free energy of solvation -62.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds