Wall clock time and date at job start Mon Mar 30 2020 18:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46714 * 2 1 4 4 C 1.52999 * 109.47304 * 119.99737 * 2 1 3 5 5 C 1.53006 * 109.46626 * 65.00546 * 4 2 1 6 6 N 1.46500 * 109.46998 * 179.97438 * 5 4 2 7 7 C 1.46504 * 119.99881 * 270.00232 * 6 5 4 8 8 C 1.38819 * 120.00069 * 89.99407 * 6 5 4 9 9 C 1.39799 * 119.58408 * 4.73290 * 8 6 5 10 10 C 1.38596 * 119.49263 * 179.78316 * 9 8 6 11 11 C 1.38399 * 118.67787 * 0.47881 * 10 9 8 12 12 C 1.40549 * 119.14779 * 359.74658 * 11 10 9 13 13 C 1.41321 * 119.78524 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99462 * 0.02562 * 13 12 11 15 15 C 1.40016 * 120.00245 * 180.02562 * 13 12 11 16 16 N 1.30745 * 120.00202 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99881 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47302 * 90.00427 * 17 15 13 19 19 H 1.48504 * 109.47148 * 210.00112 * 17 15 13 20 20 H 1.48502 * 109.47234 * 330.00163 * 17 15 13 21 21 N 1.31956 * 119.58829 * 184.99737 * 8 6 5 22 22 H 1.08998 * 109.47381 * 60.00361 * 1 2 3 23 23 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47430 * 299.99351 * 1 2 3 25 25 H 1.08993 * 109.47092 * 240.00621 * 2 1 3 26 26 H 1.08999 * 109.47112 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.46851 * 300.00487 * 3 2 1 28 28 H 1.09001 * 109.46642 * 60.00167 * 3 2 1 29 29 H 1.08993 * 109.47839 * 305.00615 * 4 2 1 30 30 H 1.09000 * 109.47160 * 185.00177 * 4 2 1 31 31 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 32 32 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 33 33 H 1.08997 * 109.47514 * 90.00045 * 7 6 5 34 34 H 1.09003 * 109.46763 * 209.99449 * 7 6 5 35 35 H 1.08995 * 109.47081 * 329.99868 * 7 6 5 36 36 H 1.08001 * 120.25555 * 359.97438 * 9 8 6 37 37 H 1.07994 * 120.66449 * 180.22380 * 10 9 8 38 38 H 1.07990 * 120.42198 * 179.76550 * 11 10 9 39 39 H 0.96998 * 119.99842 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.1242 -2.8862 2.3837 7 6 3.4526 -3.5041 2.3811 8 6 1.3289 -2.9552 3.5194 9 6 0.0258 -2.4503 3.4811 10 6 -0.7682 -2.5242 4.6146 11 6 -0.2384 -3.0909 5.7608 12 6 1.0803 -3.5764 5.7378 13 6 1.6350 -4.1572 6.9007 14 1 1.0456 -4.2271 7.8030 15 6 2.9484 -4.6418 6.8830 16 7 3.6621 -4.5566 5.7908 17 14 3.6812 -5.4101 8.4199 18 1 3.4067 -6.8695 8.4229 19 1 5.1486 -5.1825 8.4357 20 1 3.0710 -4.7891 9.6229 21 7 1.8140 -3.4916 4.6230 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 3.1299 1.4427 0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6055 -0.2618 2.1370 30 1 3.1264 -0.6442 1.2951 31 1 0.5491 -2.2724 1.1420 32 1 2.0700 -2.6549 0.3001 33 1 4.1916 -2.7784 2.7208 34 1 3.4543 -4.3646 3.0502 35 1 3.7002 -3.8290 1.3706 36 1 -0.3603 -2.0089 2.5741 37 1 -1.7787 -2.1434 4.6051 38 1 -0.8309 -3.1594 6.6610 39 1 4.5722 -4.8921 5.7787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:23 Heat of formation + Delta-G solvation = 25.389381 kcal Electronic energy + Delta-G solvation = -18246.425243 eV Core-core repulsion = 15574.534862 eV Total energy + Delta-G solvation = -2671.890381 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.52743 -36.89200 -34.88198 -33.28566 -30.53635 -29.53224 -28.63388 -27.08965 -26.13357 -24.45521 -22.84940 -21.10163 -19.90724 -19.55745 -17.37912 -16.10260 -15.12059 -14.92065 -14.67975 -14.23522 -14.12913 -13.62369 -13.18199 -13.03736 -12.86940 -12.36742 -12.14508 -11.87708 -11.76321 -11.63008 -11.17051 -11.09791 -11.01520 -10.90607 -10.69933 -10.62572 -10.53422 -10.34540 -10.14696 -9.85011 -9.37748 -8.60802 -7.84952 -7.43051 -6.33761 -6.28524 -4.43042 2.90537 3.13036 3.16335 3.28179 3.33031 4.00959 4.06634 4.86489 4.97761 5.04387 5.07776 5.45769 5.65526 5.72973 5.80447 5.82867 5.91099 5.97098 6.02455 6.10166 6.16030 6.19185 6.27268 6.31151 6.47459 6.55162 6.61950 6.71524 6.82163 6.89667 6.94803 7.16289 7.26575 7.65307 7.88358 8.00655 8.07751 8.43101 8.60426 8.85178 9.16245 10.28642 10.44330 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031315 B = 0.005686 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.931769 B = 4923.235067 C = 5457.831907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.133 4.133 5 C 0.136 3.864 6 N -0.623 5.623 7 C 0.115 3.885 8 C 0.412 3.588 9 C -0.365 4.365 10 C -0.032 4.032 11 C -0.319 4.319 12 C 0.292 3.708 13 C -0.435 4.435 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.716 5.716 17 Si 0.904 3.096 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.263 1.263 21 N -0.527 5.527 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 5.118 -9.043 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.172 4.172 5 C 0.011 3.989 6 N -0.340 5.340 7 C -0.029 4.029 8 C 0.173 3.827 9 C -0.391 4.391 10 C -0.057 4.057 11 C -0.342 4.342 12 C 0.165 3.835 13 C -0.467 4.467 14 H 0.100 0.900 15 C -0.152 4.152 16 N -0.338 5.338 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.187 1.187 21 N -0.248 5.248 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.053 0.947 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.616 4.735 -9.204 10.369 hybrid contribution -0.479 0.103 0.647 0.812 sum 0.137 4.838 -8.557 9.831 Atomic orbital electron populations 1.21896 0.95357 1.01974 1.01388 1.21066 0.95870 0.95955 0.98387 1.21829 1.00767 0.96287 1.01405 1.22121 1.00864 0.96607 0.97632 1.21295 0.99731 0.90968 0.86922 1.45987 1.16756 1.60254 1.11008 1.21313 0.83363 0.98886 0.99323 1.18505 0.86605 0.90309 0.87269 1.20647 0.96551 1.22226 0.99659 1.20586 0.96657 0.95415 0.93001 1.21524 0.98992 1.15390 0.98263 1.18215 0.87292 0.87660 0.90358 1.19561 0.97328 1.33027 0.96808 0.90024 1.26016 0.97295 0.94996 0.96882 1.70139 1.07687 1.29719 1.26246 0.86399 0.78421 0.79927 0.82423 1.19561 1.20291 1.18678 1.68243 1.35099 1.23973 0.97500 0.93254 0.92350 0.92541 0.91589 0.92933 0.93103 0.92726 0.91469 0.92304 0.90816 0.92305 0.95241 0.89231 0.94677 0.88952 0.89045 0.88842 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 2 C -0.09 -1.11 2.92 -90.61 -0.26 -1.37 16 3 C -0.15 -1.57 9.19 37.16 0.34 -1.22 16 4 C -0.13 -1.99 5.01 -26.73 -0.13 -2.12 16 5 C 0.14 2.23 5.04 -4.04 -0.02 2.21 16 6 N -0.62 -13.08 2.98 -181.68 -0.54 -13.63 16 7 C 0.11 2.29 10.46 59.85 0.63 2.92 16 8 C 0.41 10.27 7.37 -155.33 -1.14 9.12 16 9 C -0.37 -8.55 9.29 -38.87 -0.36 -8.91 16 10 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 11 C -0.32 -8.21 9.83 -38.65 -0.38 -8.59 16 12 C 0.29 8.22 6.55 -85.00 -0.56 7.66 16 13 C -0.44 -11.89 9.14 -37.74 -0.34 -12.24 16 14 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 15 C 0.07 1.87 5.50 -17.35 -0.10 1.78 16 16 N -0.72 -18.88 11.46 55.55 0.64 -18.24 16 17 Si 0.90 18.84 29.56 -169.99 -5.02 13.81 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 21 N -0.53 -14.67 6.64 -10.33 -0.07 -14.73 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.22 4.39 -51.93 -0.23 0.99 16 32 H 0.06 0.85 7.89 -51.93 -0.41 0.44 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 2.06 7.45 -51.93 -0.39 1.67 16 35 H 0.03 0.58 7.89 -51.93 -0.41 0.17 16 36 H 0.09 1.92 6.01 -52.49 -0.32 1.61 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.27 6.43 8.29 -40.82 -0.34 6.10 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -29.22 317.07 -8.91 -38.13 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.29 Total: 3.18 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -2.40 Total: -13.30 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.03 Total: -46.60 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.22 -8.91 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.519 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds