Wall clock time and date at job start Mon Mar 30 2020 18:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46714 * 2 1 4 4 C 1.52999 * 109.47304 * 119.99737 * 2 1 3 5 5 C 1.53006 * 109.46626 * 65.00546 * 4 2 1 6 6 N 1.46500 * 109.46998 * 179.97438 * 5 4 2 7 7 C 1.46504 * 119.99881 * 270.00232 * 6 5 4 8 8 C 1.38819 * 120.00069 * 89.99407 * 6 5 4 9 9 C 1.39799 * 119.58408 * 4.73290 * 8 6 5 10 10 C 1.38596 * 119.49263 * 179.78316 * 9 8 6 11 11 C 1.38399 * 118.67787 * 0.47881 * 10 9 8 12 12 C 1.40549 * 119.14779 * 359.74658 * 11 10 9 13 13 C 1.41321 * 119.78524 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99462 * 0.02562 * 13 12 11 15 15 C 1.40016 * 120.00245 * 180.02562 * 13 12 11 16 16 N 1.30745 * 120.00202 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99881 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47302 * 90.00427 * 17 15 13 19 19 H 1.48504 * 109.47148 * 210.00112 * 17 15 13 20 20 H 1.48502 * 109.47234 * 330.00163 * 17 15 13 21 21 N 1.31956 * 119.58829 * 184.99737 * 8 6 5 22 22 H 1.08998 * 109.47381 * 60.00361 * 1 2 3 23 23 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47430 * 299.99351 * 1 2 3 25 25 H 1.08993 * 109.47092 * 240.00621 * 2 1 3 26 26 H 1.08999 * 109.47112 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.46851 * 300.00487 * 3 2 1 28 28 H 1.09001 * 109.46642 * 60.00167 * 3 2 1 29 29 H 1.08993 * 109.47839 * 305.00615 * 4 2 1 30 30 H 1.09000 * 109.47160 * 185.00177 * 4 2 1 31 31 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 32 32 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 33 33 H 1.08997 * 109.47514 * 90.00045 * 7 6 5 34 34 H 1.09003 * 109.46763 * 209.99449 * 7 6 5 35 35 H 1.08995 * 109.47081 * 329.99868 * 7 6 5 36 36 H 1.08001 * 120.25555 * 359.97438 * 9 8 6 37 37 H 1.07994 * 120.66449 * 180.22380 * 10 9 8 38 38 H 1.07990 * 120.42198 * 179.76550 * 11 10 9 39 39 H 0.96998 * 119.99842 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.1242 -2.8862 2.3837 7 6 3.4526 -3.5041 2.3811 8 6 1.3289 -2.9552 3.5194 9 6 0.0258 -2.4503 3.4811 10 6 -0.7682 -2.5242 4.6146 11 6 -0.2384 -3.0909 5.7608 12 6 1.0803 -3.5764 5.7378 13 6 1.6350 -4.1572 6.9007 14 1 1.0456 -4.2271 7.8030 15 6 2.9484 -4.6418 6.8830 16 7 3.6621 -4.5566 5.7908 17 14 3.6812 -5.4101 8.4199 18 1 3.4067 -6.8695 8.4229 19 1 5.1486 -5.1825 8.4357 20 1 3.0710 -4.7891 9.6229 21 7 1.8140 -3.4916 4.6230 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 3.1299 1.4427 0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6055 -0.2618 2.1370 30 1 3.1264 -0.6442 1.2951 31 1 0.5491 -2.2724 1.1420 32 1 2.0700 -2.6549 0.3001 33 1 4.1916 -2.7784 2.7208 34 1 3.4543 -4.3646 3.0502 35 1 3.7002 -3.8290 1.3706 36 1 -0.3603 -2.0089 2.5741 37 1 -1.7787 -2.1434 4.6051 38 1 -0.8309 -3.1594 6.6610 39 1 4.5722 -4.8921 5.7787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321329248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:23 Heat of formation + Delta-G solvation = 11.193538 kcal Electronic energy + Delta-G solvation = -18247.040821 eV Core-core repulsion = 15574.534862 eV Total energy + Delta-G solvation = -2672.505959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31175 -38.27082 -36.33059 -35.17036 -32.37064 -31.32370 -30.11510 -28.00056 -27.91067 -26.16773 -24.32268 -23.01068 -21.40794 -20.80933 -19.28524 -17.83758 -16.66123 -16.53035 -16.10360 -15.99739 -15.54169 -15.13206 -14.69032 -14.45215 -14.24515 -13.92416 -13.67159 -13.33535 -13.07233 -12.84767 -12.82609 -12.65942 -12.58565 -12.53676 -12.24103 -12.01294 -11.79889 -11.68967 -11.45573 -11.40343 -11.19822 -10.42540 -9.79026 -9.38001 -8.20752 -8.11751 -6.45101 1.07649 1.36192 1.41955 1.54550 1.59114 2.26059 2.48072 2.94152 3.92712 3.95929 4.10445 4.11245 4.24975 4.37043 4.55529 4.58093 4.65643 4.74156 4.81126 4.86479 4.92000 4.95506 5.00454 5.01990 5.07110 5.10590 5.15340 5.24778 5.34781 5.36048 5.37048 5.49232 5.56481 5.76197 5.99279 6.13923 6.18357 6.63674 6.71094 6.92701 7.22416 8.36485 8.53274 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031315 B = 0.005686 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.931769 B = 4923.235067 C = 5457.831907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.123 4.123 5 C 0.131 3.869 6 N -0.625 5.625 7 C 0.120 3.880 8 C 0.392 3.608 9 C -0.364 4.364 10 C -0.031 4.031 11 C -0.347 4.347 12 C 0.257 3.743 13 C -0.472 4.472 14 H 0.083 0.917 15 C 0.028 3.972 16 N -0.746 5.746 17 Si 0.984 3.016 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.259 1.259 21 N -0.557 5.557 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.021 0.979 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 5.505 -10.524 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.162 4.162 5 C 0.009 3.991 6 N -0.341 5.341 7 C -0.023 4.023 8 C 0.153 3.847 9 C -0.389 4.389 10 C -0.055 4.055 11 C -0.370 4.370 12 C 0.130 3.870 13 C -0.504 4.504 14 H 0.102 0.898 15 C -0.194 4.194 16 N -0.368 5.368 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.183 1.183 21 N -0.279 5.279 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.620 5.145 -10.731 11.917 hybrid contribution -0.517 0.041 0.970 1.101 sum 0.103 5.186 -9.761 11.054 Atomic orbital electron populations 1.21896 0.94957 1.01932 1.01798 1.21041 0.96137 0.96319 0.97144 1.21821 1.00894 0.95636 1.01855 1.22002 1.00332 0.95735 0.98158 1.21583 0.99984 0.91589 0.85992 1.46287 1.16603 1.60190 1.11052 1.21234 0.82947 0.97328 1.00806 1.18987 0.87894 0.90039 0.87817 1.20981 0.96028 1.21267 1.00665 1.20989 0.98202 0.94162 0.92152 1.21680 0.98740 1.16973 0.99640 1.18696 0.88597 0.88568 0.91106 1.19899 0.98786 1.34692 0.97044 0.89847 1.26892 0.97061 0.95050 1.00375 1.70238 1.08160 1.30124 1.28293 0.85192 0.77641 0.78867 0.77831 1.18864 1.19292 1.18301 1.68221 1.36021 1.25309 0.98325 0.91248 0.92598 0.93782 0.89778 0.92792 0.91195 0.93756 0.94444 0.92863 0.90695 0.89383 0.96068 0.92641 0.90628 0.86241 0.85488 0.88219 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.95 71.98 0.64 -2.36 16 2 C -0.09 -1.83 2.92 -10.79 -0.03 -1.86 16 3 C -0.14 -2.77 9.19 71.99 0.66 -2.11 16 4 C -0.12 -3.49 5.01 30.60 0.15 -3.34 16 5 C 0.13 4.04 5.04 86.38 0.44 4.48 16 6 N -0.62 -25.91 2.98 -728.72 -2.17 -28.08 16 7 C 0.12 4.78 10.46 127.77 1.34 6.12 16 8 C 0.39 19.75 7.37 133.42 0.98 20.74 16 9 C -0.36 -16.82 9.29 22.73 0.21 -16.61 16 10 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 11 C -0.35 -18.29 9.83 22.87 0.22 -18.06 16 12 C 0.26 15.03 6.55 40.18 0.26 15.29 16 13 C -0.47 -26.76 9.14 23.46 0.21 -26.54 16 14 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 15 C 0.03 1.48 5.50 85.29 0.47 1.95 16 16 N -0.75 -40.48 11.46 21.83 0.25 -40.23 16 17 Si 0.98 39.23 29.56 68.60 2.03 41.26 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 N -0.56 -31.95 6.64 -186.59 -1.24 -33.19 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.15 6.56 -2.38 -0.02 1.13 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.30 4.39 -2.39 -0.01 2.29 16 32 H 0.09 2.23 7.89 -2.39 -0.02 2.21 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 2.60 7.45 -2.39 -0.02 2.58 16 35 H 0.08 2.34 7.89 -2.39 -0.02 2.32 16 36 H 0.12 4.76 6.01 -2.91 -0.02 4.74 16 37 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 38 H 0.10 4.92 8.06 -2.92 -0.02 4.90 16 39 H 0.28 13.50 8.29 -92.71 -0.77 12.73 16 Total: -1.00 -65.34 317.07 5.66 -59.68 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 1.01 Total: 24.10 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 5.79 Total: -23.53 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -3.16 Total: -101.50 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -65.34 5.66 -59.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.872 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds