Wall clock time and date at job start Mon Mar 30 2020 18:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99929 * 269.99768 * 5 4 3 7 7 C 1.53002 * 109.47469 * 90.00362 * 6 5 4 8 8 C 1.38821 * 120.00222 * 89.99778 * 5 4 3 9 9 C 1.39798 * 119.58344 * 4.72579 * 8 5 4 10 10 C 1.38598 * 119.48860 * 179.78738 * 9 8 5 11 11 C 1.38395 * 118.68204 * 0.48164 * 10 9 8 12 12 C 1.40550 * 119.14824 * 359.74134 * 11 10 9 13 13 C 1.41314 * 119.78445 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99972 * 0.02955 * 13 12 11 15 15 C 1.40026 * 119.99898 * 180.02562 * 13 12 11 16 16 N 1.30743 * 120.00042 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47142 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46940 * 120.00357 * 17 15 13 20 20 H 1.48500 * 109.47109 * 239.99980 * 17 15 13 21 21 N 1.31959 * 119.58559 * 184.99916 * 8 5 4 22 22 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 30 30 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 31 31 H 1.09006 * 109.47504 * 210.00281 * 6 5 4 32 32 H 1.09003 * 109.47379 * 329.99916 * 6 5 4 33 33 H 1.09007 * 109.46520 * 299.99897 * 7 6 5 34 34 H 1.08993 * 109.47222 * 59.99569 * 7 6 5 35 35 H 1.08998 * 109.47034 * 180.02562 * 7 6 5 36 36 H 1.07994 * 120.25595 * 0.02562 * 9 8 5 37 37 H 1.07998 * 120.65948 * 180.22240 * 10 9 8 38 38 H 1.08001 * 120.42367 * 179.76859 * 11 10 9 39 39 H 0.97006 * 119.99546 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0584 2.8235 0.0000 6 6 4.3021 3.5148 -1.2684 7 6 3.0270 4.2365 -1.7092 8 6 4.2902 3.4773 1.2025 9 6 4.1504 2.7793 2.4056 10 6 4.3867 3.4327 3.6049 11 6 4.7467 4.7687 3.5737 12 6 4.8662 5.4167 2.3322 13 6 5.2325 6.7807 2.2847 14 1 5.4200 7.3217 3.2004 15 6 5.3524 7.4308 1.0503 16 7 5.1250 6.7760 -0.0582 17 14 5.8372 9.2337 0.9876 18 1 6.0377 9.7408 2.3688 19 1 7.0993 9.3804 0.2188 20 1 4.7607 10.0131 0.3250 21 7 4.6346 4.7511 1.1957 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9284 0.8891 30 1 3.9329 0.9286 -0.8908 31 1 5.1041 4.2414 -1.1381 32 1 4.5899 2.7886 -2.0286 33 1 2.2249 3.5098 -1.8397 34 1 2.7392 4.9627 -0.9491 35 1 3.2082 4.7504 -2.6532 36 1 3.8642 1.7380 2.4006 37 1 4.2877 2.9109 4.5452 38 1 4.9337 5.3063 4.4915 39 1 5.2077 7.2266 -0.9133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324086388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:25 Heat of formation + Delta-G solvation = 24.975407 kcal Electronic energy + Delta-G solvation = -18447.964697 eV Core-core repulsion = 15776.056365 eV Total energy + Delta-G solvation = -2671.908332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.54105 -36.43943 -34.28452 -33.36029 -30.71532 -30.25327 -29.37754 -27.27798 -25.32129 -23.26767 -22.36034 -21.12290 -20.64791 -19.44307 -17.39089 -16.22665 -15.12967 -14.87914 -14.61164 -14.24754 -14.08010 -13.42344 -13.18286 -12.90873 -12.65758 -12.40958 -12.27669 -11.87659 -11.75048 -11.33154 -11.14493 -11.01335 -10.93229 -10.89804 -10.71607 -10.55645 -10.38796 -10.27848 -9.91510 -9.76056 -9.38769 -8.62077 -7.84163 -7.41283 -6.33482 -6.27867 -4.42164 2.89542 3.13751 3.17885 3.28857 3.32914 4.01237 4.04971 4.87397 5.09862 5.12846 5.28987 5.47773 5.80961 5.83838 5.86980 5.92497 5.98433 6.07104 6.08569 6.17871 6.22015 6.26177 6.35492 6.40382 6.47039 6.61472 6.76266 6.84399 6.91057 6.95385 7.16454 7.20993 7.27324 7.66515 7.89302 8.01728 8.10074 8.44691 8.62083 8.86070 9.17427 10.29120 10.44759 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.006503 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.665211 B = 4304.435284 C = 4976.106373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.137 3.863 5 N -0.618 5.618 6 C 0.137 3.863 7 C -0.155 4.155 8 C 0.413 3.587 9 C -0.366 4.366 10 C -0.032 4.032 11 C -0.319 4.319 12 C 0.291 3.709 13 C -0.435 4.435 14 H 0.081 0.919 15 C 0.073 3.927 16 N -0.713 5.713 17 Si 0.902 3.098 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.524 5.524 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 -7.521 -3.594 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.179 4.179 4 C 0.012 3.988 5 N -0.334 5.334 6 C 0.014 3.986 7 C -0.213 4.213 8 C 0.175 3.825 9 C -0.392 4.392 10 C -0.057 4.057 11 C -0.342 4.342 12 C 0.164 3.836 13 C -0.467 4.467 14 H 0.099 0.901 15 C -0.151 4.151 16 N -0.335 5.335 17 Si 0.727 3.273 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 N -0.245 5.245 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.082 -7.103 -4.706 9.448 hybrid contribution -0.024 0.331 0.767 0.835 sum -4.106 -6.772 -3.939 8.845 Atomic orbital electron populations 1.21754 0.96219 1.00994 1.01814 1.21465 0.95623 0.97295 1.01554 1.22178 0.97146 0.95878 1.02694 1.21217 0.92763 0.83524 1.01326 1.46127 1.72167 1.11849 1.03295 1.21101 0.98429 0.95443 0.83649 1.22094 0.98138 1.00354 1.00763 1.18506 0.89893 0.90137 0.84013 1.20654 1.26311 0.99700 0.92536 1.20583 0.95216 0.94241 0.95640 1.21525 1.18964 0.95635 0.98084 1.18223 0.86903 0.92730 0.85709 1.19582 1.39918 0.93863 0.93319 0.90069 1.26002 0.93990 0.99567 0.95587 1.70148 1.29709 1.35673 0.97922 0.86370 0.78697 0.82854 0.79422 1.18576 1.20029 1.20043 1.68260 1.23103 1.03984 1.29162 0.92765 0.92978 0.93194 0.92404 0.92167 0.91611 0.91984 0.91161 0.92277 0.88540 0.94126 0.94664 0.91360 0.93649 0.89046 0.89112 0.88910 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.15 0.37 -1.26 16 2 C -0.12 -1.43 5.93 -26.74 -0.16 -1.59 16 3 C -0.14 -2.08 5.54 -26.73 -0.15 -2.23 16 4 C 0.14 2.23 5.29 -4.04 -0.02 2.21 16 5 N -0.62 -12.66 2.58 -173.80 -0.45 -13.11 16 6 C 0.14 2.68 6.15 -4.04 -0.02 2.66 16 7 C -0.15 -2.88 10.24 37.16 0.38 -2.49 16 8 C 0.41 10.11 7.37 -155.32 -1.14 8.97 16 9 C -0.37 -8.54 9.29 -38.87 -0.36 -8.90 16 10 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 11 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 12 C 0.29 8.10 6.55 -85.00 -0.56 7.55 16 13 C -0.43 -11.76 9.14 -37.74 -0.34 -12.10 16 14 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 15 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 16 N -0.71 -18.36 11.46 55.55 0.64 -17.72 16 17 Si 0.90 18.71 29.56 -169.99 -5.02 13.69 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 N -0.52 -14.24 6.64 -10.33 -0.07 -14.31 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.94 6.26 -51.93 -0.33 0.62 16 29 H 0.07 1.16 5.97 -51.93 -0.31 0.85 16 30 H 0.06 0.85 7.89 -51.93 -0.41 0.44 16 31 H 0.10 2.20 7.45 -51.93 -0.39 1.81 16 32 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 33 H 0.03 0.59 6.26 -51.92 -0.33 0.26 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.91 6.01 -52.49 -0.32 1.59 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.09 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.27 6.28 8.29 -40.82 -0.34 5.94 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -28.36 317.56 -9.26 -37.62 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.26 Total: 4.20 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.89 Total: -15.15 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.12 Total: -45.14 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.36 -9.26 -37.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324086388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.596 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds