Wall clock time and date at job start Mon Mar 30 2020 18:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47031 * 2 1 4 4 C 1.50693 * 109.47387 * 239.99306 * 2 1 3 5 5 H 1.08003 * 119.99858 * 354.68244 * 4 2 1 6 6 C 1.37876 * 120.00214 * 174.68186 * 4 2 1 7 7 N 1.31516 * 120.00193 * 180.78787 * 6 4 2 8 8 Si 1.86806 * 120.00076 * 0.79358 * 6 4 2 9 9 H 1.48501 * 109.47062 * 84.88292 * 8 6 4 10 10 H 1.48491 * 109.47159 * 204.88912 * 8 6 4 11 11 H 1.48504 * 109.46579 * 324.88742 * 8 6 4 12 12 N 1.46908 * 109.46996 * 119.99454 * 2 1 3 13 13 C 1.46893 * 110.99746 * 58.95225 * 12 2 1 14 14 C 1.46901 * 110.99797 * 295.00110 * 12 2 1 15 15 C 1.50699 * 109.47293 * 190.00166 * 14 12 2 16 16 C 1.34850 * 125.89391 * 94.68651 * 15 14 12 17 17 C 1.40889 * 107.41670 * 179.89106 * 16 15 14 18 18 C 1.34853 * 107.42013 * 0.37956 * 17 16 15 19 19 N 1.36343 * 125.88825 * 275.00239 * 15 14 12 20 20 C 1.46505 * 125.63777 * 359.95188 * 19 15 14 21 21 C 1.52992 * 117.50048 * 188.62439 * 20 19 15 22 22 C 1.52999 * 117.49947 * 119.99695 * 20 19 15 23 23 H 1.08994 * 109.47220 * 173.59993 * 1 2 3 24 24 H 1.09005 * 109.47397 * 293.60787 * 1 2 3 25 25 H 1.09003 * 109.46928 * 53.59982 * 1 2 3 26 26 H 0.97002 * 119.99804 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47027 * 60.00451 * 13 12 2 28 28 H 1.09000 * 109.47753 * 299.99875 * 13 12 2 29 29 H 1.09004 * 109.46873 * 180.02562 * 13 12 2 30 30 H 1.09003 * 109.47425 * 309.99932 * 14 12 2 31 31 H 1.08999 * 109.47151 * 70.00114 * 14 12 2 32 32 H 1.07991 * 126.29021 * 0.02772 * 16 15 14 33 33 H 1.08003 * 126.29097 * 180.17363 * 17 16 15 34 34 H 1.07995 * 125.89669 * 179.80593 * 18 17 16 35 35 H 1.09001 * 115.54681 * 334.33082 * 20 19 15 36 36 H 1.09002 * 117.50464 * 359.97438 * 21 20 19 37 37 H 1.09001 * 117.49937 * 145.02199 * 21 20 19 38 38 H 1.09004 * 117.49813 * 214.97800 * 22 20 19 39 39 H 1.09004 * 117.50200 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 1.3343 -1.1955 -1.8967 6 6 3.3831 -0.7415 -1.5053 7 7 3.8201 -1.3483 -2.5872 8 14 4.5923 0.0782 -0.3411 9 1 4.9365 -0.8607 0.7567 10 1 5.8247 0.4439 -1.0844 11 1 3.9768 1.3031 0.2299 12 7 2.0196 -0.6924 1.1996 13 6 1.5282 -2.0759 1.2462 14 6 1.6486 0.0394 2.4181 15 6 2.3678 -0.5567 3.6007 16 6 3.5364 -0.1238 4.1157 17 6 3.8494 -0.9555 5.2090 18 6 2.8643 -1.8703 5.3152 19 7 1.9520 -1.6305 4.3307 20 6 0.7272 -2.3995 4.0964 21 6 0.3354 -3.4413 5.1460 22 6 0.8773 -3.8904 3.7874 23 1 -0.3633 -1.0212 -0.1145 24 1 -0.3634 0.4116 0.9417 25 1 -0.3633 0.6099 -0.8272 26 1 4.7704 -1.3698 -2.7808 27 1 1.8762 -2.6149 0.3651 28 1 0.4384 -2.0741 1.2642 29 1 1.9052 -2.5653 2.1443 30 1 1.9296 1.0872 2.3125 31 1 0.5721 -0.0343 2.5726 32 1 4.1233 0.7090 3.7575 33 1 4.7200 -0.8772 5.8432 34 1 2.8074 -2.6568 6.0532 35 1 -0.0779 -1.8605 3.5969 36 1 0.9892 -3.5551 6.0108 37 1 -0.7276 -3.5880 5.3373 38 1 0.1706 -4.3324 3.0850 39 1 1.8873 -4.2994 3.7589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324425659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:28 Heat of formation + Delta-G solvation = 93.353148 kcal Electronic energy + Delta-G solvation = -19041.200013 eV Core-core repulsion = 16372.256762 eV Total energy + Delta-G solvation = -2668.943251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16723 -37.21386 -36.91013 -32.48265 -30.69492 -30.27324 -28.58055 -26.09862 -25.51726 -23.06942 -22.84621 -22.54640 -20.03058 -19.28490 -18.37589 -17.17158 -16.59858 -15.49145 -15.12851 -14.49349 -14.00175 -13.92853 -13.72887 -13.17634 -13.02809 -12.50073 -12.42626 -12.15861 -11.95834 -11.66107 -11.54482 -11.35856 -11.20300 -10.88185 -10.74848 -10.66862 -10.50387 -10.18135 -9.89602 -9.57702 -9.08464 -8.49148 -8.18941 -7.70094 -7.17854 -5.98679 -4.05800 2.44778 3.02927 3.38381 3.58898 3.63832 3.66730 3.78517 4.44793 4.65604 4.67719 4.70956 4.98622 5.12447 5.33119 5.41219 5.51922 5.56137 5.65491 5.70862 5.86498 5.92863 6.04404 6.10565 6.14645 6.28261 6.28913 6.34630 6.49790 6.62159 6.70300 6.82912 6.99410 7.22411 7.37831 7.58496 7.67766 7.70037 8.05345 8.25678 8.61011 9.00711 9.66387 11.10880 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.008486 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.933849 B = 3298.761378 C = 3787.804896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.512 4.512 5 H 0.070 0.930 6 C 0.083 3.917 7 N -0.901 5.901 8 Si 0.917 3.083 9 H -0.268 1.268 10 H -0.314 1.314 11 H -0.273 1.273 12 N -0.528 5.528 13 C 0.035 3.965 14 C 0.113 3.887 15 C 0.048 3.952 16 C -0.193 4.193 17 C -0.198 4.198 18 C -0.029 4.029 19 N -0.416 5.416 20 C 0.065 3.935 21 C -0.180 4.180 22 C -0.176 4.176 23 H 0.048 0.952 24 H 0.028 0.972 25 H 0.050 0.950 26 H 0.263 0.737 27 H 0.078 0.922 28 H 0.009 0.991 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 -2.033 15.793 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.063 0.937 4 C -0.550 4.550 5 H 0.088 0.912 6 C -0.121 4.121 7 N -0.538 5.538 8 Si 0.748 3.252 9 H -0.194 1.194 10 H -0.243 1.243 11 H -0.199 1.199 12 N -0.253 5.253 13 C -0.113 4.113 14 C -0.016 4.016 15 C -0.063 4.063 16 C -0.218 4.218 17 C -0.223 4.223 18 C -0.157 4.157 19 N -0.091 5.091 20 C -0.038 4.038 21 C -0.218 4.218 22 C -0.214 4.214 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.152 0.848 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.623 -2.273 15.592 16.730 hybrid contribution -0.094 0.263 0.592 0.655 sum -5.717 -2.010 16.185 17.282 Atomic orbital electron populations 1.22288 1.00118 1.00783 0.99073 1.19913 0.89685 0.95512 0.88474 0.93730 1.20830 0.93101 1.36027 1.05048 0.91185 1.25019 0.98711 0.93928 0.94429 1.69958 1.14865 1.43152 1.25825 0.86176 0.78237 0.80511 0.80306 1.19380 1.24270 1.19878 1.62727 1.59433 1.02369 1.00789 1.22338 0.95773 0.91037 1.02193 1.20614 0.95184 0.98057 0.87716 1.20405 0.97816 0.91451 0.96620 1.20619 0.97287 1.04031 0.99819 1.20770 1.00424 0.99227 1.01853 1.21503 0.92906 1.04148 0.97174 1.43387 1.17096 1.23967 1.24697 1.21836 0.88522 0.88873 1.04615 1.23411 1.02564 1.01934 0.93882 1.23489 1.03643 0.95952 0.98357 0.93321 0.95323 0.93071 0.92781 0.90300 0.97235 0.93061 0.89755 0.95264 0.85102 0.85179 0.82987 0.84844 0.88114 0.87542 0.87330 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.38 37.16 0.31 -2.92 16 2 C 0.17 3.92 1.70 -68.86 -0.12 3.81 16 3 H 0.04 1.08 6.81 -51.93 -0.35 0.73 16 4 C -0.51 -14.20 7.82 -34.44 -0.27 -14.47 16 5 H 0.07 2.10 7.99 -52.48 -0.42 1.69 16 6 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.92 23.96 26.26 -169.99 -4.46 19.50 16 9 H -0.27 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.31 -8.26 7.11 56.52 0.40 -7.86 16 11 H -0.27 -6.88 6.52 56.52 0.37 -6.51 16 12 N -0.53 -11.44 2.76 -237.73 -0.66 -12.09 16 13 C 0.03 0.70 7.59 60.06 0.46 1.15 16 14 C 0.11 2.09 4.62 -4.98 -0.02 2.06 16 15 C 0.05 0.87 5.69 -81.79 -0.47 0.40 16 16 C -0.19 -3.47 10.77 -39.78 -0.43 -3.90 16 17 C -0.20 -3.11 10.86 -39.78 -0.43 -3.55 16 18 C -0.03 -0.42 10.73 -16.75 -0.18 -0.60 16 19 N -0.42 -6.43 2.68 -105.48 -0.28 -6.71 16 20 C 0.07 0.83 4.50 -67.93 -0.31 0.52 16 21 C -0.18 -1.71 9.97 -26.73 -0.27 -1.97 16 22 C -0.18 -1.97 8.81 -26.73 -0.24 -2.21 16 23 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16 24 H 0.03 0.49 6.46 -51.93 -0.34 0.15 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.08 1.84 7.12 -51.93 -0.37 1.47 16 28 H 0.01 0.17 6.42 -51.93 -0.33 -0.16 16 29 H 0.05 0.96 3.91 -51.93 -0.20 0.75 16 30 H 0.08 1.55 8.00 -51.93 -0.42 1.13 16 31 H 0.03 0.50 6.05 -51.93 -0.31 0.18 16 32 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.15 1.74 6.98 -52.49 -0.37 1.37 16 35 H 0.13 1.68 7.40 -51.93 -0.38 1.30 16 36 H 0.10 0.90 6.78 -51.93 -0.35 0.55 16 37 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 300.97 15.07 4.54 4.54 Total: -1.00 -31.43 300.97 -8.05 -39.48 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.90 Total: 1.63 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.05 Total: -19.33 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.17 Total: -45.82 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.46 Total: 19.50 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.43 -8.05 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324425659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.836 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds