Wall clock time and date at job start Mon Mar 30 2020 18:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47031 * 2 1 4 4 C 1.50693 * 109.47387 * 239.99306 * 2 1 3 5 5 H 1.08003 * 119.99858 * 354.68244 * 4 2 1 6 6 C 1.37876 * 120.00214 * 174.68186 * 4 2 1 7 7 N 1.31516 * 120.00193 * 180.78787 * 6 4 2 8 8 Si 1.86806 * 120.00076 * 0.79358 * 6 4 2 9 9 H 1.48501 * 109.47062 * 84.88292 * 8 6 4 10 10 H 1.48491 * 109.47159 * 204.88912 * 8 6 4 11 11 H 1.48504 * 109.46579 * 324.88742 * 8 6 4 12 12 N 1.46908 * 109.46996 * 119.99454 * 2 1 3 13 13 C 1.46893 * 110.99746 * 58.95225 * 12 2 1 14 14 C 1.46901 * 110.99797 * 295.00110 * 12 2 1 15 15 C 1.50699 * 109.47293 * 190.00166 * 14 12 2 16 16 C 1.34850 * 125.89391 * 94.68651 * 15 14 12 17 17 C 1.40889 * 107.41670 * 179.89106 * 16 15 14 18 18 C 1.34853 * 107.42013 * 0.37956 * 17 16 15 19 19 N 1.36343 * 125.88825 * 275.00239 * 15 14 12 20 20 C 1.46505 * 125.63777 * 359.95188 * 19 15 14 21 21 C 1.52992 * 117.50048 * 188.62439 * 20 19 15 22 22 C 1.52999 * 117.49947 * 119.99695 * 20 19 15 23 23 H 1.08994 * 109.47220 * 173.59993 * 1 2 3 24 24 H 1.09005 * 109.47397 * 293.60787 * 1 2 3 25 25 H 1.09003 * 109.46928 * 53.59982 * 1 2 3 26 26 H 0.97002 * 119.99804 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47027 * 60.00451 * 13 12 2 28 28 H 1.09000 * 109.47753 * 299.99875 * 13 12 2 29 29 H 1.09004 * 109.46873 * 180.02562 * 13 12 2 30 30 H 1.09003 * 109.47425 * 309.99932 * 14 12 2 31 31 H 1.08999 * 109.47151 * 70.00114 * 14 12 2 32 32 H 1.07991 * 126.29021 * 0.02772 * 16 15 14 33 33 H 1.08003 * 126.29097 * 180.17363 * 17 16 15 34 34 H 1.07995 * 125.89669 * 179.80593 * 18 17 16 35 35 H 1.09001 * 115.54681 * 334.33082 * 20 19 15 36 36 H 1.09002 * 117.50464 * 359.97438 * 21 20 19 37 37 H 1.09001 * 117.49937 * 145.02199 * 21 20 19 38 38 H 1.09004 * 117.49813 * 214.97800 * 22 20 19 39 39 H 1.09004 * 117.50200 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 1.3343 -1.1955 -1.8967 6 6 3.3831 -0.7415 -1.5053 7 7 3.8201 -1.3483 -2.5872 8 14 4.5923 0.0782 -0.3411 9 1 4.9365 -0.8607 0.7567 10 1 5.8247 0.4439 -1.0844 11 1 3.9768 1.3031 0.2299 12 7 2.0196 -0.6924 1.1996 13 6 1.5282 -2.0759 1.2462 14 6 1.6486 0.0394 2.4181 15 6 2.3678 -0.5567 3.6007 16 6 3.5364 -0.1238 4.1157 17 6 3.8494 -0.9555 5.2090 18 6 2.8643 -1.8703 5.3152 19 7 1.9520 -1.6305 4.3307 20 6 0.7272 -2.3995 4.0964 21 6 0.3354 -3.4413 5.1460 22 6 0.8773 -3.8904 3.7874 23 1 -0.3633 -1.0212 -0.1145 24 1 -0.3634 0.4116 0.9417 25 1 -0.3633 0.6099 -0.8272 26 1 4.7704 -1.3698 -2.7808 27 1 1.8762 -2.6149 0.3651 28 1 0.4384 -2.0741 1.2642 29 1 1.9052 -2.5653 2.1443 30 1 1.9296 1.0872 2.3125 31 1 0.5721 -0.0343 2.5726 32 1 4.1233 0.7090 3.7575 33 1 4.7200 -0.8772 5.8432 34 1 2.8074 -2.6568 6.0532 35 1 -0.0779 -1.8605 3.5969 36 1 0.9892 -3.5551 6.0108 37 1 -0.7276 -3.5880 5.3373 38 1 0.1706 -4.3324 3.0850 39 1 1.8873 -4.2994 3.7589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324425659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:27 Heat of formation + Delta-G solvation = 74.970254 kcal Electronic energy + Delta-G solvation = -19041.997155 eV Core-core repulsion = 16372.256762 eV Total energy + Delta-G solvation = -2669.740393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.33671 -38.91441 -37.82367 -34.58631 -32.34042 -31.43706 -30.10119 -27.65055 -27.40182 -24.68399 -23.84540 -23.40619 -21.25537 -21.06848 -19.52400 -18.89605 -18.17398 -16.87489 -16.37583 -16.22975 -15.56565 -15.30391 -15.06230 -14.83373 -14.47007 -14.31634 -13.75162 -13.43769 -13.22197 -13.08143 -13.00665 -12.74178 -12.62652 -12.47540 -12.30924 -12.17053 -11.87533 -11.70125 -11.55345 -11.42651 -11.10931 -10.74809 -9.33591 -9.04076 -8.75685 -8.24940 -6.33268 1.25864 1.44989 1.54710 1.65143 1.96557 2.12633 2.49552 2.78771 3.05398 3.53667 3.66848 3.81979 3.88627 3.96713 4.11051 4.33684 4.45111 4.47686 4.60609 4.64999 4.67966 4.71583 4.73598 4.79970 4.86987 4.89783 4.95179 5.10308 5.15333 5.32234 5.41321 5.44323 5.47515 5.65215 6.08473 6.15212 6.35701 6.45390 6.58927 6.61798 6.82633 7.41471 8.87989 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.008486 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.933849 B = 3298.761378 C = 3787.804896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.171 3.829 3 H 0.039 0.961 4 C -0.504 4.504 5 H 0.035 0.965 6 C 0.033 3.967 7 N -0.947 5.947 8 Si 0.975 3.025 9 H -0.279 1.279 10 H -0.318 1.318 11 H -0.258 1.258 12 N -0.548 5.548 13 C 0.048 3.952 14 C 0.120 3.880 15 C 0.022 3.978 16 C -0.217 4.217 17 C -0.217 4.217 18 C -0.016 4.016 19 N -0.414 5.414 20 C 0.033 3.967 21 C -0.147 4.147 22 C -0.182 4.182 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.263 0.737 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.187 0.813 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 -2.247 18.764 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.065 3.935 3 H 0.057 0.943 4 C -0.543 4.543 5 H 0.054 0.946 6 C -0.166 4.166 7 N -0.587 5.587 8 Si 0.805 3.195 9 H -0.205 1.205 10 H -0.247 1.247 11 H -0.182 1.182 12 N -0.273 5.273 13 C -0.100 4.100 14 C -0.008 4.008 15 C -0.090 4.090 16 C -0.242 4.242 17 C -0.241 4.241 18 C -0.146 4.146 19 N -0.089 5.089 20 C -0.069 4.069 21 C -0.184 4.184 22 C -0.220 4.220 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.204 0.796 35 H 0.152 0.848 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.135 0.865 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.932 -2.482 18.577 19.983 hybrid contribution 0.226 0.266 -0.282 0.449 sum -6.705 -2.216 18.295 19.610 Atomic orbital electron populations 1.22148 0.97356 1.00957 1.00853 1.19730 0.91966 0.94363 0.87430 0.94340 1.21094 0.92272 1.34673 1.06212 0.94635 1.25703 1.00488 0.94825 0.95566 1.70071 1.15107 1.45664 1.27886 0.85250 0.76291 0.79953 0.78039 1.20493 1.24697 1.18238 1.62382 1.60351 1.03065 1.01550 1.22192 0.96897 0.90010 1.00899 1.20531 0.96436 0.97481 0.86363 1.20279 0.98331 0.93147 0.97241 1.20839 0.97701 1.04596 1.01071 1.21056 1.01782 0.99430 1.01868 1.22059 0.91789 1.03930 0.96808 1.43556 1.17898 1.23292 1.24156 1.22123 0.87767 0.89285 1.07767 1.23530 1.04177 0.97772 0.92908 1.23507 1.03467 0.94615 1.00400 0.93602 0.92226 0.92939 0.92874 0.94309 0.95194 0.91550 0.89937 0.93287 0.85912 0.83420 0.79578 0.84830 0.87048 0.85061 0.86475 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 8.38 71.98 0.60 -5.19 16 2 C 0.17 7.81 1.70 44.16 0.08 7.89 16 3 H 0.04 1.82 6.81 -2.39 -0.02 1.80 16 4 C -0.50 -28.52 7.82 25.60 0.20 -28.32 16 5 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 6 C 0.03 1.97 5.47 84.65 0.46 2.44 16 7 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 8 Si 0.98 50.47 26.26 68.60 1.80 52.27 16 9 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 10 H -0.32 -16.48 7.11 99.48 0.71 -15.77 16 11 H -0.26 -12.53 6.52 99.48 0.65 -11.88 16 12 N -0.55 -23.15 2.76 -906.06 -2.50 -25.65 16 13 C 0.05 1.89 7.59 127.69 0.97 2.86 16 14 C 0.12 4.20 4.62 85.56 0.40 4.59 16 15 C 0.02 0.75 5.69 41.08 0.23 0.98 16 16 C -0.22 -7.55 10.77 22.14 0.24 -7.31 16 17 C -0.22 -6.37 10.86 22.14 0.24 -6.13 16 18 C -0.02 -0.42 10.73 83.21 0.89 0.47 16 19 N -0.41 -11.67 2.68 -487.63 -1.31 -12.97 16 20 C 0.03 0.74 4.50 44.99 0.20 0.94 16 21 C -0.15 -2.11 9.97 30.59 0.30 -1.81 16 22 C -0.18 -3.51 8.81 30.60 0.27 -3.24 16 23 H 0.04 1.73 6.75 -2.39 -0.02 1.71 16 24 H 0.06 1.86 6.46 -2.38 -0.02 1.85 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 27 H 0.04 1.82 7.12 -2.39 -0.02 1.80 16 28 H 0.03 1.04 6.42 -2.39 -0.02 1.02 16 29 H 0.07 2.40 3.91 -2.39 -0.01 2.39 16 30 H 0.08 2.89 8.00 -2.39 -0.02 2.87 16 31 H 0.05 1.51 6.05 -2.39 -0.01 1.50 16 32 H 0.12 4.30 8.06 -2.92 -0.02 4.28 16 33 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.19 3.39 6.98 -2.91 -0.02 3.37 16 35 H 0.13 2.91 7.40 -2.39 -0.02 2.89 16 36 H 0.11 1.41 6.78 -2.39 -0.02 1.39 16 37 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -69.30 300.97 4.35 -64.96 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.97 Total: 13.26 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 5.09 Total: -31.84 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -3.51 Total: -98.64 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.80 Total: 52.27 kcal Total: -69.30 4.35 -64.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324425659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.928 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds