Wall clock time and date at job start Mon Mar 30 2020 18:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46750 * 2 1 4 4 H 1.08992 * 109.47820 * 54.99731 * 3 2 1 5 5 C 1.53002 * 109.46797 * 294.99630 * 3 2 1 6 6 C 1.53003 * 109.46949 * 174.99951 * 3 2 1 7 7 C 1.52996 * 109.47301 * 184.99469 * 6 3 2 8 8 N 1.46498 * 109.47059 * 179.97438 * 7 6 3 9 9 C 1.38826 * 119.99929 * 179.72446 * 8 7 6 10 10 C 1.39803 * 119.58329 * 0.27967 * 9 8 7 11 11 C 1.38598 * 119.49027 * 179.97438 * 10 9 8 12 12 C 1.38380 * 118.68061 * 359.97438 * 11 10 9 13 13 C 1.40559 * 119.15236 * 0.02562 * 12 11 10 14 14 C 1.41316 * 119.78778 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99697 * 359.97438 * 14 13 12 16 16 C 1.40026 * 119.99906 * 179.97438 * 14 13 12 17 17 N 1.30740 * 120.00312 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99593 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47264 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46798 * 120.00373 * 18 16 14 21 21 H 1.48505 * 109.47212 * 240.00102 * 18 16 14 22 22 N 1.31955 * 119.58557 * 180.02562 * 9 8 7 23 23 H 1.09002 * 109.47234 * 60.00516 * 1 2 3 24 24 H 1.09005 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47109 * 300.00402 * 1 2 3 26 26 H 1.08989 * 109.47045 * 239.99713 * 2 1 3 27 27 H 1.09000 * 109.46777 * 119.99749 * 2 1 3 28 28 H 1.09000 * 109.47288 * 300.00008 * 5 3 2 29 29 H 1.08994 * 109.47240 * 60.00602 * 5 3 2 30 30 H 1.09005 * 109.47180 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.47038 * 64.99479 * 6 3 2 32 32 H 1.09000 * 109.46939 * 305.00131 * 6 3 2 33 33 H 1.09004 * 109.47066 * 60.00027 * 7 6 3 34 34 H 1.08994 * 109.46974 * 300.00175 * 7 6 3 35 35 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 36 36 H 1.07998 * 120.25142 * 359.95312 * 10 9 8 37 37 H 1.08002 * 120.65631 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.42591 * 179.97438 * 12 11 10 39 39 H 0.96995 * 120.00059 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2510 8 7 5.5244 2.8868 0.3720 9 6 6.2095 4.0882 0.4929 10 6 5.4969 5.2909 0.5041 11 6 6.1828 6.4892 0.6254 12 6 7.5620 6.4570 0.7330 13 6 8.2214 5.2158 0.7155 14 6 9.6295 5.1673 0.8250 15 1 10.1954 6.0821 0.9214 16 6 10.2909 3.9332 0.8086 17 7 9.6058 2.8258 0.6914 18 14 12.1522 3.8692 0.9527 19 1 12.6872 5.2493 1.0728 20 1 12.5288 3.0862 2.1570 21 1 12.7204 3.2210 -0.2567 22 7 7.5246 4.0802 0.6009 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0699 1.5874 -2.1492 29 1 0.5489 2.1252 -1.3970 30 1 1.9988 3.1541 -1.3077 31 1 4.0029 0.9836 -0.7596 32 1 3.8570 0.8801 1.0113 33 1 3.6263 3.3459 1.1364 34 1 3.7722 3.4492 -0.6346 35 1 6.0128 2.0487 0.3633 36 1 4.4204 5.2863 0.4185 37 1 5.6512 7.4292 0.6365 38 1 8.1247 7.3739 0.8284 39 1 10.0640 1.9710 0.6796 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327693301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:35 Heat of formation + Delta-G solvation = 9.294991 kcal Electronic energy + Delta-G solvation = -17511.998940 eV Core-core repulsion = 14839.410654 eV Total energy + Delta-G solvation = -2672.588286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.34585 -37.39580 -34.82384 -33.24049 -31.20332 -30.23015 -28.96707 -27.25635 -25.30059 -24.85166 -22.08660 -21.27195 -20.21219 -19.86961 -17.31088 -16.19217 -15.43882 -15.19673 -14.74437 -14.54726 -14.25482 -13.83809 -13.55146 -13.07486 -12.95954 -12.69305 -12.25577 -12.02138 -11.92607 -11.75224 -11.46770 -11.25188 -10.99154 -10.93701 -10.68656 -10.61997 -10.54180 -10.37375 -10.35090 -9.84937 -9.43659 -8.81912 -7.85973 -7.46059 -6.44490 -6.28463 -4.43100 2.90169 3.13855 3.18461 3.28677 3.33859 4.01540 4.21370 4.74953 4.80821 4.88711 4.92514 5.19368 5.34406 5.42863 5.52059 5.59268 5.69581 5.80077 5.86658 5.93724 5.96545 6.06250 6.08539 6.19285 6.19840 6.21464 6.41171 6.46792 6.63567 6.91494 6.94395 7.00763 7.29754 7.65282 7.86907 7.97295 8.22276 8.42814 8.75333 8.85407 9.17755 10.29581 10.45247 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031527 B = 0.004371 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.921620 B = 6404.857930 C = 7167.055760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.126 4.126 7 C 0.141 3.859 8 N -0.740 5.740 9 C 0.411 3.589 10 C -0.367 4.367 11 C -0.032 4.032 12 C -0.318 4.318 13 C 0.292 3.708 14 C -0.435 4.435 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.716 5.716 18 Si 0.904 3.096 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.274 1.274 22 N -0.533 5.533 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.394 0.606 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 -5.421 -1.628 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.164 4.164 7 C 0.016 3.984 8 N -0.377 5.377 9 C 0.171 3.829 10 C -0.393 4.393 11 C -0.057 4.057 12 C -0.341 4.341 13 C 0.165 3.835 14 C -0.467 4.467 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.338 5.338 18 Si 0.729 3.271 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.254 5.254 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.229 0.771 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.790 -6.336 -1.650 13.486 hybrid contribution 0.489 0.459 0.066 0.674 sum -11.301 -5.877 -1.584 12.836 Atomic orbital electron populations 1.21826 0.96091 1.01282 1.01872 1.21573 0.95677 0.96475 1.01989 1.21085 0.94929 0.96059 0.98619 0.91066 1.21956 1.00895 1.01003 0.97049 1.21822 0.95041 0.97024 1.02475 1.21101 0.81446 0.95735 1.00158 1.44174 1.04231 1.06193 1.83081 1.18554 0.90074 0.84610 0.89685 1.20611 0.97742 0.92654 1.28285 1.20592 0.94131 0.95689 0.95261 1.21527 0.93994 0.98097 1.20464 1.18215 0.93110 0.85651 0.86521 1.19609 0.90585 0.93427 1.43120 0.89888 1.26051 1.00164 0.95549 0.93603 1.70166 1.36278 0.98075 1.29316 0.86331 0.82876 0.79475 0.78430 1.18463 1.19978 1.19974 1.68224 1.02745 1.29578 1.24871 0.92518 0.93082 0.92834 0.92041 0.92041 0.92743 0.92750 0.92155 0.91496 0.91528 0.93423 0.93034 0.77126 0.89256 0.88993 0.88747 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 37.16 0.36 -0.88 16 2 C -0.12 -1.10 5.40 -26.73 -0.14 -1.24 16 3 C -0.09 -0.92 2.39 -90.62 -0.22 -1.13 16 4 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.54 8.70 37.16 0.32 -1.21 16 6 C -0.13 -1.58 4.80 -26.73 -0.13 -1.71 16 7 C 0.14 2.27 4.64 -4.04 -0.02 2.25 16 8 N -0.74 -15.38 5.72 -60.39 -0.35 -15.72 16 9 C 0.41 10.39 7.65 -155.32 -1.19 9.21 16 10 C -0.37 -8.77 9.34 -38.86 -0.36 -9.14 16 11 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 12 C -0.32 -8.27 9.83 -38.65 -0.38 -8.65 16 13 C 0.29 8.36 6.55 -85.00 -0.56 7.80 16 14 C -0.44 -12.05 9.14 -37.74 -0.34 -12.40 16 15 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 16 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 17 N -0.72 -19.41 11.46 55.55 0.64 -18.78 16 18 Si 0.90 19.03 29.56 -169.99 -5.02 14.00 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 N -0.53 -15.15 7.89 -10.32 -0.08 -15.23 16 23 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.56 8.14 -51.94 -0.42 0.14 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 30 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.05 0.83 6.34 -51.93 -0.33 0.51 16 35 H 0.39 8.14 8.59 -40.82 -0.35 7.79 16 36 H 0.09 1.91 6.68 -52.49 -0.35 1.56 16 37 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -29.98 316.31 -9.44 -39.42 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.24 Total: 8.05 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -3.15 Total: -16.52 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.21 Total: -49.73 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.98 -9.44 -39.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327693301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.719 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds