Wall clock time and date at job start Mon Mar 30 2020 18:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99713 * 2 1 4 4 H 1.48503 * 109.46862 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47145 * 299.99392 * 3 2 1 6 6 H 1.48499 * 109.47260 * 59.99660 * 3 2 1 7 7 C 1.37866 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00217 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47347 * 179.97438 * 9 7 2 11 11 O 1.42094 * 108.57628 * 65.51412 * 10 9 7 12 12 O 1.42105 * 108.57617 * 294.48631 * 10 9 7 13 13 C 1.81402 * 101.92097 * 180.02562 * 10 9 7 14 14 C 1.52999 * 109.46956 * 180.02562 * 13 10 9 15 15 H 1.08997 * 110.46401 * 57.36824 * 14 13 10 16 16 C 1.54098 * 110.51868 * 179.97438 * 14 13 10 17 17 N 1.47096 * 103.77403 * 118.76698 * 16 14 13 18 18 C 1.34004 * 108.88222 * 0.24629 * 17 16 14 19 19 O 1.21507 * 123.06992 * 179.76112 * 18 17 16 20 20 O 1.33779 * 113.85515 * 359.56165 * 18 17 16 21 21 H 0.96996 * 120.00026 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46514 * 59.99781 * 9 7 2 23 23 H 1.08994 * 109.47073 * 300.00057 * 9 7 2 24 24 H 1.08999 * 109.46985 * 59.99713 * 13 10 9 25 25 H 1.09001 * 109.46523 * 299.99789 * 13 10 9 26 26 H 1.08997 * 110.56346 * 0.19999 * 16 14 13 27 27 H 1.09000 * 110.68890 * 237.40066 * 16 14 13 28 28 H 0.97001 * 125.55524 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 8 3.1485 -3.8591 1.2263 12 8 3.1485 -3.8591 -1.2253 13 6 1.3245 -5.3161 -0.0003 14 6 2.1574 -6.5995 0.0003 15 1 2.8261 -6.6194 0.8608 16 6 1.2408 -7.8383 0.0003 17 7 1.5856 -8.5290 -1.2518 18 6 2.5404 -7.8321 -1.8829 19 8 3.0199 -8.1760 -2.9450 20 8 2.9144 -6.7209 -1.2386 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5570 -0.8897 23 1 0.6242 -2.5567 0.8902 24 1 0.6959 -5.2907 -0.8904 25 1 0.6954 -5.2912 0.8896 26 1 0.1927 -7.5390 -0.0037 27 1 1.4531 -8.4744 0.8596 28 1 1.1894 -9.3564 -1.5671 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334099135.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:41 Heat of formation + Delta-G solvation = -143.668255 kcal Electronic energy + Delta-G solvation = -16427.370774 eV Core-core repulsion = 13378.375509 eV Total energy + Delta-G solvation = -3048.995264 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 249.055 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66948 -37.39422 -36.07480 -35.12073 -34.89690 -33.38591 -32.31448 -29.13677 -26.84523 -23.75962 -22.83365 -22.27725 -18.35700 -18.21554 -17.32627 -16.90590 -16.52228 -15.95097 -15.39789 -15.13957 -14.72737 -14.43322 -14.24031 -13.85238 -13.45438 -12.77231 -12.51904 -12.49930 -12.18846 -11.41971 -11.18381 -11.11889 -10.94663 -10.92573 -10.77281 -10.63766 -10.27596 -9.80632 -9.61015 -9.14018 -8.74697 -6.36998 -4.46273 0.79053 2.53381 2.64724 3.19602 3.26043 3.26921 3.34794 3.64704 3.83361 4.03291 4.23678 4.42177 4.64798 4.73397 4.94780 4.99801 5.08050 5.18692 5.39114 5.56885 6.56324 6.57126 6.62440 7.11475 7.45249 7.70863 7.96933 8.56139 9.21427 10.74948 Molecular weight = 249.05amu Principal moments of inertia in cm(-1) A = 0.048714 B = 0.005617 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.647505 B = 4983.707152 C = 5091.046520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.074 0.926 9 C -0.401 4.401 10 S 2.394 3.606 11 O -0.954 6.954 12 O -0.935 6.935 13 C -0.654 4.654 14 C 0.081 3.919 15 H 0.132 0.868 16 C 0.076 3.924 17 N -0.739 5.739 18 C 0.645 3.355 19 O -0.521 6.521 20 O -0.309 6.309 21 H 0.268 0.732 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.138 0.862 25 H 0.152 0.848 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -14.109 3.383 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.092 0.908 9 C -0.536 4.536 10 S 2.578 3.422 11 O -0.951 6.951 12 O -0.932 6.932 13 C -0.776 4.776 14 C 0.024 3.976 15 H 0.150 0.850 16 C -0.050 4.050 17 N -0.413 5.413 18 C 0.397 3.603 19 O -0.405 6.405 20 O -0.218 6.218 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.157 0.843 25 H 0.170 0.830 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -1.837 -13.916 2.815 14.316 hybrid contribution -1.057 0.332 0.034 1.109 sum -2.894 -13.584 2.849 14.178 Atomic orbital electron populations 1.69949 1.06259 1.27672 1.48001 1.24935 0.95047 0.99652 0.93508 0.86280 0.80485 0.81963 0.78025 1.18895 1.20337 1.20361 1.20410 0.93082 0.88354 1.54954 0.90817 1.27522 1.09717 1.09732 1.06662 1.09075 0.79615 0.78196 0.75346 1.93484 1.69668 1.85940 1.46012 1.93539 1.69209 1.85281 1.45192 1.31010 1.16890 1.17303 1.12398 1.23447 0.92937 0.94251 0.86974 0.84999 1.22893 1.00931 0.92948 0.88231 1.45975 1.42478 1.28977 1.23869 1.18607 0.79070 0.78999 0.83614 1.91070 1.59646 1.70143 1.19663 1.87532 1.58984 1.40823 1.34489 0.92241 0.89646 0.89689 0.84326 0.82978 0.88227 0.88332 0.72235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.31 13.29 55.43 0.74 -23.58 15 2 C 0.07 2.01 5.46 -17.82 -0.10 1.92 15 3 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 15 4 H -0.26 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.53 -14.32 9.13 -34.44 -0.31 -14.63 15 8 H 0.07 2.00 7.71 -52.49 -0.40 1.59 15 9 C -0.40 -9.03 5.56 36.01 0.20 -8.83 15 10 S 2.39 46.48 4.58 -107.50 -0.49 45.99 15 11 O -0.95 -20.60 18.10 -57.83 -1.05 -21.64 15 12 O -0.94 -21.88 17.40 -61.63 -1.07 -22.95 15 13 C -0.65 -8.08 5.38 37.16 0.20 -7.88 15 14 C 0.08 0.95 3.85 -26.16 -0.10 0.85 15 15 H 0.13 1.31 8.14 -51.93 -0.42 0.89 15 16 C 0.08 0.56 7.71 -3.14 -0.02 0.53 15 17 N -0.74 -7.12 6.40 -64.72 -0.41 -7.53 15 18 C 0.64 9.96 9.16 53.71 0.49 10.45 15 19 O -0.52 -10.03 18.04 -19.11 -0.34 -10.37 15 20 O -0.31 -5.13 10.00 -41.07 -0.41 -5.54 15 21 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 22 H 0.09 1.89 8.14 -51.92 -0.42 1.46 15 23 H 0.09 1.81 8.14 -51.93 -0.42 1.39 15 24 H 0.14 1.55 8.14 -51.92 -0.42 1.12 15 25 H 0.15 1.28 8.14 -51.92 -0.42 0.85 15 26 H 0.10 0.53 7.73 -51.93 -0.40 0.13 15 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 15 28 H 0.43 2.92 8.96 -40.82 -0.37 2.56 15 LS Contribution 266.47 15.07 4.02 4.02 Total: -1.00 -37.60 266.47 -6.54 -44.14 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -2.84 Total: -0.73 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 0.36 Total: -17.60 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.32 Total: -31.11 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -2.87 Total: -60.51 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 46.48 SS G_CDS: -0.49 Total: 45.99 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -37.60 -6.54 -44.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334099135.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.528 kcal (2) G-P(sol) polarization free energy of solvation -37.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds