Wall clock time and date at job start Mon Mar 30 2020 18:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99713 * 2 1 4 4 H 1.48503 * 109.46862 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47145 * 299.99392 * 3 2 1 6 6 H 1.48499 * 109.47260 * 59.99660 * 3 2 1 7 7 C 1.37866 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00217 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47347 * 179.97438 * 9 7 2 11 11 O 1.42094 * 108.57628 * 65.51412 * 10 9 7 12 12 O 1.42105 * 108.57617 * 294.48631 * 10 9 7 13 13 C 1.81402 * 101.92097 * 180.02562 * 10 9 7 14 14 C 1.52999 * 109.46956 * 180.02562 * 13 10 9 15 15 H 1.08997 * 110.46401 * 57.36824 * 14 13 10 16 16 C 1.54098 * 110.51868 * 179.97438 * 14 13 10 17 17 N 1.47096 * 103.77403 * 118.76698 * 16 14 13 18 18 C 1.34004 * 108.88222 * 0.24629 * 17 16 14 19 19 O 1.21507 * 123.06992 * 179.76112 * 18 17 16 20 20 O 1.33779 * 113.85515 * 359.56165 * 18 17 16 21 21 H 0.96996 * 120.00026 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46514 * 59.99781 * 9 7 2 23 23 H 1.08994 * 109.47073 * 300.00057 * 9 7 2 24 24 H 1.08999 * 109.46985 * 59.99713 * 13 10 9 25 25 H 1.09001 * 109.46523 * 299.99789 * 13 10 9 26 26 H 1.08997 * 110.56346 * 0.19999 * 16 14 13 27 27 H 1.09000 * 110.68890 * 237.40066 * 16 14 13 28 28 H 0.97001 * 125.55524 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 8 3.1485 -3.8591 1.2263 12 8 3.1485 -3.8591 -1.2253 13 6 1.3245 -5.3161 -0.0003 14 6 2.1574 -6.5995 0.0003 15 1 2.8261 -6.6194 0.8608 16 6 1.2408 -7.8383 0.0003 17 7 1.5856 -8.5290 -1.2518 18 6 2.5404 -7.8321 -1.8829 19 8 3.0199 -8.1760 -2.9450 20 8 2.9144 -6.7209 -1.2386 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5570 -0.8897 23 1 0.6242 -2.5567 0.8902 24 1 0.6959 -5.2907 -0.8904 25 1 0.6954 -5.2912 0.8896 26 1 0.1927 -7.5390 -0.0037 27 1 1.4531 -8.4744 0.8596 28 1 1.1894 -9.3564 -1.5671 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334099135.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:40 Heat of formation + Delta-G solvation = -177.511030 kcal Electronic energy + Delta-G solvation = -16428.838307 eV Core-core repulsion = 13378.375509 eV Total energy + Delta-G solvation = -3050.462797 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 249.055 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.67268 -38.58309 -37.73749 -36.78334 -35.80276 -35.37413 -33.35967 -31.01783 -27.75112 -25.54245 -23.91372 -23.26364 -19.75741 -19.30197 -18.96526 -18.15034 -17.73351 -17.50765 -16.83028 -16.76062 -16.00583 -15.83909 -15.42923 -14.72416 -14.49002 -14.36354 -13.98287 -13.64768 -13.50931 -13.33502 -12.89735 -12.81337 -12.72237 -12.54683 -12.05324 -11.97014 -11.79330 -11.58846 -10.85682 -10.76398 -10.35824 -8.40781 -6.55383 -0.72410 1.36505 1.38157 1.51767 1.52809 1.65407 2.16648 2.31195 2.46321 2.80824 2.93708 3.15974 3.34333 3.38793 3.69837 4.15665 4.24423 4.48533 4.63246 4.71703 4.80590 4.83417 5.38986 5.77827 5.79128 6.14228 6.54728 7.00401 7.15015 8.71702 Molecular weight = 249.05amu Principal moments of inertia in cm(-1) A = 0.048714 B = 0.005617 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.647505 B = 4983.707152 C = 5091.046520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.563 4.563 8 H 0.056 0.944 9 C -0.425 4.425 10 S 2.405 3.595 11 O -0.985 6.985 12 O -0.988 6.988 13 C -0.613 4.613 14 C 0.059 3.941 15 H 0.150 0.850 16 C 0.084 3.916 17 N -0.713 5.713 18 C 0.636 3.364 19 O -0.577 6.577 20 O -0.349 6.349 21 H 0.273 0.727 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.160 0.840 25 H 0.208 0.792 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.450 0.550 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 -15.860 4.838 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.601 4.601 8 H 0.075 0.925 9 C -0.557 4.557 10 S 2.594 3.406 11 O -0.982 6.982 12 O -0.986 6.986 13 C -0.744 4.744 14 C 0.002 3.998 15 H 0.168 0.832 16 C -0.040 4.040 17 N -0.387 5.387 18 C 0.388 3.612 19 O -0.465 6.465 20 O -0.259 6.259 21 H 0.082 0.918 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.178 0.822 25 H 0.225 0.775 26 H 0.154 0.846 27 H 0.162 0.838 28 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -3.599 -15.583 4.309 16.564 hybrid contribution -0.581 0.747 -0.354 1.010 sum -4.181 -14.837 3.955 15.914 Atomic orbital electron populations 1.69991 1.07126 1.28673 1.48630 1.25727 0.95989 1.02773 0.93202 0.85501 0.79010 0.78576 0.78834 1.19368 1.19364 1.18860 1.20806 0.92920 0.91195 1.55207 0.92539 1.27627 1.10659 1.10695 1.06755 1.08123 0.79495 0.79273 0.73702 1.93440 1.71123 1.87096 1.46532 1.93481 1.71295 1.86788 1.46988 1.30652 1.15137 1.12186 1.16385 1.24025 0.94141 0.95635 0.85960 0.83240 1.23242 1.01533 0.91009 0.88228 1.45888 1.40218 1.28717 1.23925 1.18856 0.79825 0.79142 0.83343 1.91014 1.61818 1.71462 1.22252 1.87500 1.60434 1.41573 1.36372 0.91763 0.89887 0.88781 0.82170 0.77478 0.84640 0.83804 0.70401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.29 13.29 21.44 0.28 -50.01 15 2 C 0.03 1.42 5.46 84.65 0.46 1.89 15 3 Si 0.96 43.07 29.54 68.60 2.03 45.09 15 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 15 7 C -0.56 -31.38 9.13 25.60 0.23 -31.15 15 8 H 0.06 3.22 7.71 -2.91 -0.02 3.20 15 9 C -0.42 -19.33 5.56 71.24 0.40 -18.93 15 10 S 2.40 92.67 4.58 -56.49 -0.26 92.41 15 11 O -0.98 -42.48 18.10 -127.37 -2.31 -44.78 15 12 O -0.99 -47.71 17.40 -123.74 -2.15 -49.86 15 13 C -0.61 -12.59 5.38 71.98 0.39 -12.21 15 14 C 0.06 1.14 3.85 30.97 0.12 1.26 15 15 H 0.15 2.38 8.14 -2.39 -0.02 2.36 15 16 C 0.08 0.71 7.71 86.64 0.67 1.38 15 17 N -0.71 -10.88 6.40 -590.39 -3.78 -14.66 15 18 C 0.64 18.77 9.16 129.91 1.19 19.96 15 19 O -0.58 -22.50 18.04 19.66 0.35 -22.15 15 20 O -0.35 -11.14 10.00 -44.31 -0.44 -11.59 15 21 H 0.27 14.07 8.31 -92.71 -0.77 13.29 15 22 H 0.08 3.72 8.14 -2.39 -0.02 3.70 15 23 H 0.09 3.99 8.14 -2.39 -0.02 3.97 15 24 H 0.16 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.21 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.14 0.34 7.73 -2.39 -0.02 0.32 15 27 H 0.14 0.13 8.14 -2.39 -0.02 0.11 15 28 H 0.45 4.24 8.96 -92.71 -0.83 3.41 15 Total: -1.00 -88.47 266.47 -2.45 -90.92 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 0.36 Total: 2.42 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 3.46 Total: -37.81 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -3.49 Total: -64.67 kcal Atomic # 8 Polarization: -123.83 SS G_CDS: -4.55 Total: -128.37 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 92.67 SS G_CDS: -0.26 Total: 92.41 kcal Total: -88.47 -2.45 -90.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334099135.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.587 kcal (2) G-P(sol) polarization free energy of solvation -88.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds