Wall clock time and date at job start Mon Mar 30 2020 18:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 115.56426 * 2 1 4 4 C 1.52997 * 117.49663 * 214.30853 * 2 1 3 5 5 C 1.52993 * 60.00106 * 252.51104 * 4 2 1 6 6 H 1.09002 * 117.50411 * 107.51633 * 5 4 2 7 7 C 1.53006 * 117.50163 * 252.51292 * 5 4 2 8 8 H 1.09011 * 115.55630 * 342.91566 * 7 5 4 9 9 C 1.53066 * 117.49775 * 197.21167 * 7 5 4 10 10 C 1.52990 * 117.50091 * 128.60405 * 7 5 4 11 11 H 1.09003 * 117.49927 * 359.97438 * 10 7 5 12 12 N 1.46901 * 117.50107 * 214.98170 * 10 7 5 13 13 C 1.46898 * 111.00283 * 155.09041 * 12 10 7 14 14 C 1.52997 * 109.47386 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.46832 * 304.99869 * 14 13 12 16 16 C 1.47206 * 109.47168 * 64.99626 * 14 13 12 17 17 N 6.36361 * 140.36606 * 14.20586 * 2 1 3 18 18 C 1.52997 * 109.47232 * 184.99670 * 14 13 12 19 19 C 1.50697 * 109.47050 * 174.99758 * 18 14 13 20 20 H 1.08007 * 120.00134 * 0.02562 * 19 18 14 21 21 C 1.37882 * 119.99937 * 179.97438 * 19 18 14 22 22 N 1.31509 * 119.99960 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47482 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47138 * 120.00085 * 23 21 19 26 26 H 1.48503 * 109.46778 * 239.99901 * 23 21 19 27 27 H 1.09003 * 109.47124 * 274.31608 * 1 2 3 28 28 H 1.08998 * 109.47302 * 34.31084 * 1 2 3 29 29 H 1.09005 * 109.47295 * 154.31291 * 1 2 3 30 30 H 1.08999 * 117.49919 * 145.02207 * 4 2 1 31 31 H 1.09000 * 117.52128 * 359.97438 * 4 2 1 32 32 H 1.08997 * 117.52026 * 145.03565 * 9 7 5 33 33 H 1.09003 * 117.49512 * 359.97438 * 9 7 5 34 34 H 1.00895 * 111.00102 * 31.13322 * 12 10 7 35 35 H 1.09004 * 109.47163 * 59.99599 * 13 12 10 36 36 H 1.09002 * 109.46852 * 300.00147 * 13 12 10 37 37 H 1.08994 * 109.47510 * 294.99830 * 18 14 13 38 38 H 1.09000 * 109.46818 * 55.00071 * 18 14 13 39 39 H 0.97005 * 119.99650 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7650 6 1 1.6115 -1.8587 1.2684 7 6 3.5490 -0.7759 1.4715 8 1 4.4457 -0.8389 0.8548 9 6 3.6782 -1.1573 2.9482 10 6 3.5072 0.3097 2.5487 11 1 2.5448 0.7784 2.7539 12 7 4.6786 1.1874 2.6729 13 6 4.3090 2.4772 3.2710 14 6 5.5519 3.3623 3.3832 15 1 6.3265 2.8322 3.9376 16 6 6.0474 3.6857 2.0353 17 7 6.4308 3.9351 0.9962 18 6 5.1928 4.6551 4.1184 19 6 6.4403 5.4716 4.3375 20 1 7.3940 5.1052 3.9870 21 6 6.3641 6.6868 4.9844 22 7 5.2028 7.1332 5.4106 23 14 7.9105 7.6992 5.2553 24 1 9.0788 6.9804 4.6865 25 1 7.7640 9.0158 4.5844 26 1 8.1180 7.9058 6.7112 27 1 -0.3633 0.0773 1.0248 28 1 -0.3634 0.8488 -0.5793 29 1 -0.3634 -0.9261 -0.4455 30 1 3.1714 -0.8753 -1.2682 31 1 1.6114 -1.8590 -1.2680 32 1 4.6598 -1.4711 3.3033 33 1 2.8279 -1.6536 3.4161 34 1 5.1284 1.3188 1.7794 35 1 3.8901 2.3108 4.2635 36 1 3.5679 2.9703 2.6419 37 1 4.4839 5.2281 3.5207 38 1 4.7434 4.4126 5.0814 39 1 5.1493 7.9880 5.8661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338563054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:45 Heat of formation + Delta-G solvation = 53.335571 kcal Electronic energy + Delta-G solvation = -17169.477382 eV Core-core repulsion = 14498.798839 eV Total energy + Delta-G solvation = -2670.678543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.13432 -37.33784 -36.02555 -34.13761 -32.91328 -30.75514 -28.73387 -26.37468 -23.58390 -22.98850 -21.94176 -21.27468 -20.91002 -19.91285 -16.76341 -16.54039 -15.96008 -15.74695 -14.82794 -14.58594 -14.20770 -13.74565 -13.35007 -13.13994 -13.06675 -12.79906 -12.44136 -12.12312 -12.01101 -11.79089 -11.75665 -11.38920 -11.25799 -11.06521 -10.99470 -10.76423 -10.69807 -10.49529 -10.29779 -10.04498 -9.68060 -9.46389 -9.20865 -8.46345 -8.18685 -6.10124 -4.13147 3.28359 3.36518 3.39179 3.41369 3.55779 3.60364 3.83490 4.12564 4.41131 4.45008 4.62528 4.75915 4.78840 4.98425 5.11147 5.17610 5.22599 5.28062 5.35019 5.52174 5.55441 5.57973 5.60344 5.68366 5.72877 5.84493 5.88852 6.01468 6.13589 6.15161 6.17690 6.38562 6.53413 7.14272 7.38768 7.43665 7.52332 7.85162 8.22569 8.38268 8.91621 9.52414 11.00820 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.034160 B = 0.003803 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.486106 B = 7360.186548 C = 7403.261281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.152 4.152 3 H 0.103 0.897 4 C -0.174 4.174 5 C -0.118 4.118 6 H 0.104 0.896 7 C -0.140 4.140 8 H 0.105 0.895 9 C -0.159 4.159 10 C 0.030 3.970 11 H 0.102 0.898 12 N -0.662 5.662 13 C 0.070 3.930 14 C 0.006 3.994 15 H 0.111 0.889 16 C 0.241 3.759 17 N -0.476 5.476 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.282 1.282 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.339 0.661 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -16.692 -6.078 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.170 4.170 3 H 0.121 0.879 4 C -0.211 4.211 5 C -0.136 4.136 6 H 0.123 0.877 7 C -0.159 4.159 8 H 0.123 0.877 9 C -0.197 4.197 10 C -0.081 4.081 11 H 0.120 0.880 12 N -0.292 5.292 13 C -0.060 4.060 14 C -0.016 4.016 15 H 0.129 0.871 16 C -0.076 4.076 17 N -0.153 5.153 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.208 1.208 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.159 0.841 35 H 0.111 0.889 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.841 -16.419 -6.959 19.481 hybrid contribution 0.302 1.051 -0.147 1.103 sum -7.539 -15.368 -7.106 18.534 Atomic orbital electron populations 1.21364 0.92892 1.01785 1.01903 1.22403 0.95092 0.94857 1.04681 0.87898 1.23139 1.02608 1.01456 0.93872 1.21861 0.97112 1.01383 0.93255 0.87749 1.22177 0.97133 1.05056 0.91528 0.87704 1.23253 1.03168 0.97847 0.95460 1.22482 0.93960 0.89329 1.02312 0.88048 1.60340 1.24977 1.14471 1.29442 1.22127 0.96045 0.87186 1.00637 1.19345 0.96986 0.99861 0.85409 0.87100 1.29305 0.92374 0.91471 0.94418 1.81007 1.10023 1.10589 1.13721 1.19167 0.97746 0.88313 0.95424 1.21186 0.93752 1.03867 1.37598 0.92442 1.24956 0.96085 0.97569 0.95386 1.69948 1.23718 1.20380 1.38970 0.86534 0.83460 0.80195 0.77893 1.19670 1.20999 1.20808 0.92160 0.92153 0.92717 0.88910 0.88933 0.88212 0.88959 0.84146 0.88868 0.94549 0.95733 0.94143 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.19 37.16 0.38 -0.61 16 2 C -0.15 -1.44 6.05 -90.62 -0.55 -1.99 16 3 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.17 -1.54 9.90 -26.74 -0.26 -1.80 16 5 C -0.12 -1.09 5.59 -90.62 -0.51 -1.60 16 6 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.14 -1.44 5.67 -90.59 -0.51 -1.96 16 8 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 9 C -0.16 -1.63 10.18 -26.70 -0.27 -1.90 16 10 C 0.03 0.34 5.90 -67.72 -0.40 -0.05 16 11 H 0.10 1.17 7.90 -51.93 -0.41 0.76 16 12 N -0.66 -8.95 6.74 -106.73 -0.72 -9.67 16 13 C 0.07 1.04 4.97 -3.83 -0.02 1.03 16 14 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 15 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 16 C 0.24 4.89 12.97 -20.78 -0.27 4.62 16 17 N -0.48 -10.41 18.53 42.13 0.78 -9.63 16 18 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 19 C -0.53 -14.04 8.60 -34.44 -0.30 -14.34 16 20 H 0.06 1.53 7.59 -52.48 -0.40 1.14 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 23 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.39 7.90 -51.93 -0.41 -0.02 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.34 4.77 7.76 -39.29 -0.30 4.47 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -28.87 335.09 -8.90 -37.78 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.57 Total: 1.42 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -3.16 Total: -16.48 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.80 Total: -44.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.87 -8.90 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338563054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.113 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds