Wall clock time and date at job start Mon Mar 30 2020 18:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 115.55683 * 2 1 4 4 C 1.53002 * 117.50072 * 214.31756 * 2 1 3 5 5 C 1.52997 * 60.00046 * 252.50317 * 4 2 1 6 6 H 1.08999 * 117.50355 * 107.50707 * 5 4 2 7 7 C 1.52998 * 117.50255 * 252.51247 * 5 4 2 8 8 H 1.09008 * 115.55944 * 342.91613 * 7 5 4 9 9 C 1.53069 * 117.49505 * 197.21062 * 7 5 4 10 10 C 1.53002 * 117.50438 * 128.60486 * 7 5 4 11 11 H 1.08998 * 117.49707 * 359.97438 * 10 7 5 12 12 N 1.46898 * 117.49809 * 214.98274 * 10 7 5 13 13 C 1.46898 * 110.99934 * 155.08804 * 12 10 7 14 14 C 1.52997 * 109.47390 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.46881 * 54.99442 * 14 13 12 16 16 C 1.47201 * 109.47013 * 295.00280 * 14 13 12 17 17 N 7.95998 * 135.81091 * 65.69266 * 2 1 3 18 18 C 1.52997 * 109.47504 * 174.99803 * 14 13 12 19 19 C 1.50701 * 109.47212 * 184.99949 * 18 14 13 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 14 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 14 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47432 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46890 * 120.00210 * 23 21 19 26 26 H 1.48501 * 109.47062 * 240.00257 * 23 21 19 27 27 H 1.09004 * 109.46640 * 274.30411 * 1 2 3 28 28 H 1.08990 * 109.47532 * 34.30714 * 1 2 3 29 29 H 1.09001 * 109.46760 * 154.31526 * 1 2 3 30 30 H 1.09002 * 117.50066 * 145.01556 * 4 2 1 31 31 H 1.08996 * 117.51511 * 359.97438 * 4 2 1 32 32 H 1.09004 * 117.51477 * 145.03331 * 9 7 5 33 33 H 1.09003 * 117.49565 * 359.97438 * 9 7 5 34 34 H 1.00893 * 111.00632 * 31.12664 * 12 10 7 35 35 H 1.09003 * 109.47230 * 59.99766 * 13 12 10 36 36 H 1.08998 * 109.46947 * 299.99824 * 13 12 10 37 37 H 1.09002 * 109.47153 * 64.99951 * 18 14 13 38 38 H 1.09001 * 109.46832 * 305.00142 * 18 14 13 39 39 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2366 -1.1210 0.7648 6 1 1.6117 -1.8587 1.2682 7 6 3.5491 -0.7758 1.4713 8 1 4.4458 -0.8386 0.8546 9 6 3.6784 -1.1574 2.9480 10 6 3.5074 0.3097 2.5487 11 1 2.5449 0.7783 2.7540 12 7 4.6787 1.1875 2.6729 13 6 4.3090 2.4772 3.2710 14 6 5.5520 3.3619 3.3844 15 1 6.0218 3.4556 2.4053 16 6 6.5031 2.7531 4.3287 17 7 7.2376 2.2839 5.0565 18 6 5.1473 4.7478 3.8906 19 6 6.3503 5.6555 3.8858 20 1 7.3077 5.2814 3.5544 21 6 6.2284 6.9639 4.3035 22 7 5.0625 7.4195 4.7065 23 14 7.7194 8.0891 4.2967 24 1 8.9025 7.3404 3.8017 25 1 7.4601 9.2490 3.4063 26 1 7.9808 8.5727 5.6762 27 1 -0.3633 0.0771 1.0248 28 1 -0.3634 0.8488 -0.5792 29 1 -0.3633 -0.9262 -0.4454 30 1 3.1715 -0.8750 -1.2685 31 1 1.6116 -1.8587 -1.2682 32 1 4.6601 -1.4712 3.3030 33 1 2.8281 -1.6538 3.4158 34 1 5.1284 1.3190 1.7794 35 1 3.8902 2.3107 4.2635 36 1 3.5678 2.9703 2.6420 37 1 4.7589 4.6648 4.9057 38 1 4.3772 5.1617 3.2397 39 1 4.9768 8.3399 5.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338563070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:47 Heat of formation + Delta-G solvation = 53.632240 kcal Electronic energy + Delta-G solvation = -17125.383642 eV Core-core repulsion = 14454.717963 eV Total energy + Delta-G solvation = -2670.665679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.12938 -37.24596 -35.98028 -34.06320 -32.91079 -30.73149 -28.73998 -26.38286 -23.58748 -22.96743 -21.86325 -21.29834 -20.91598 -19.93902 -17.01034 -16.49058 -15.95154 -15.46551 -14.61592 -14.48937 -14.17008 -14.11326 -13.43892 -13.23742 -12.97259 -12.56415 -12.31569 -12.16165 -11.93690 -11.76671 -11.67149 -11.39850 -11.32263 -11.09852 -10.88133 -10.75197 -10.67431 -10.48357 -10.24959 -10.07409 -9.67456 -9.46823 -9.20172 -8.46655 -8.15728 -6.10270 -4.13329 3.28185 3.36482 3.39003 3.41295 3.74438 3.82837 3.85611 4.12125 4.41003 4.44822 4.61914 4.75233 4.89899 4.98927 5.10445 5.17610 5.23206 5.28078 5.34972 5.54161 5.56525 5.57540 5.59199 5.66373 5.77763 5.83733 5.90141 5.99144 6.04869 6.14178 6.17501 6.39857 6.49642 7.14778 7.41172 7.45686 7.52776 7.85277 8.22528 8.59257 8.91715 9.52286 11.00699 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.003972 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.976224 B = 7048.081998 C = 7642.560834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.151 4.151 3 H 0.105 0.895 4 C -0.174 4.174 5 C -0.119 4.119 6 H 0.103 0.897 7 C -0.137 4.137 8 H 0.106 0.894 9 C -0.163 4.163 10 C 0.032 3.968 11 H 0.102 0.898 12 N -0.664 5.664 13 C 0.069 3.931 14 C 0.009 3.991 15 H 0.099 0.901 16 C 0.255 3.745 17 N -0.479 5.479 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.342 0.658 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.027 0.973 38 H 0.038 0.962 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 -14.837 -10.547 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 H 0.123 0.877 4 C -0.211 4.211 5 C -0.137 4.137 6 H 0.121 0.879 7 C -0.156 4.156 8 H 0.124 0.876 9 C -0.201 4.201 10 C -0.079 4.079 11 H 0.119 0.881 12 N -0.294 5.294 13 C -0.061 4.061 14 C -0.013 4.013 15 H 0.117 0.883 16 C -0.062 4.062 17 N -0.155 5.155 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.162 0.838 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.153 -15.640 -8.783 19.704 hybrid contribution 0.099 1.324 -0.948 1.631 sum -8.054 -14.316 -9.731 19.092 Atomic orbital electron populations 1.21368 0.92961 1.01782 1.01903 1.22406 0.95051 0.94870 1.04585 0.87727 1.23139 1.02595 1.01483 0.93841 1.21865 0.97149 1.01435 0.93262 0.87865 1.22164 0.97084 1.04954 0.91405 0.87613 1.23257 1.03103 0.98121 0.95613 1.22463 0.93914 0.89287 1.02192 0.88079 1.60270 1.25092 1.14532 1.29522 1.22114 0.96214 0.87430 1.00335 1.19222 0.90129 0.96446 0.95505 0.88340 1.28828 0.93116 0.90897 0.93361 1.80959 1.11174 1.12165 1.11243 1.19174 0.97651 0.86452 0.97465 1.21184 0.95260 0.95678 1.44275 0.92433 1.24954 0.95899 0.98180 0.94954 1.69948 1.23218 1.16188 1.43676 0.86537 0.83099 0.80671 0.77788 1.19660 1.20856 1.20949 0.92194 0.92107 0.92766 0.88854 0.89009 0.88376 0.89054 0.83829 0.90364 0.93079 0.95510 0.94428 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.19 37.16 0.38 -0.55 16 2 C -0.15 -1.29 6.05 -90.62 -0.55 -1.84 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.17 -1.39 9.90 -26.73 -0.26 -1.66 16 5 C -0.12 -1.04 5.59 -90.62 -0.51 -1.55 16 6 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 7 C -0.14 -1.35 5.67 -90.58 -0.51 -1.86 16 8 H 0.11 1.06 8.14 -51.92 -0.42 0.63 16 9 C -0.16 -1.75 10.18 -26.69 -0.27 -2.03 16 10 C 0.03 0.37 5.90 -67.71 -0.40 -0.03 16 11 H 0.10 1.15 7.90 -51.93 -0.41 0.74 16 12 N -0.66 -8.75 6.45 -106.73 -0.69 -9.44 16 13 C 0.07 1.02 4.90 -3.83 -0.02 1.00 16 14 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 15 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.25 5.39 13.67 -20.78 -0.28 5.10 16 17 N -0.48 -11.04 18.53 42.13 0.78 -10.25 16 18 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 19 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 20 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 23 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.37 7.90 -51.93 -0.41 -0.04 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.65 8.05 -51.93 -0.42 0.24 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.34 4.09 8.69 -39.30 -0.34 3.75 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -29.69 336.28 -8.90 -38.59 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.61 Total: 0.09 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.17 Total: -15.56 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.83 Total: -44.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.69 -8.90 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338563070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.223 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds