Wall clock time and date at job start Mon Mar 30 2020 18:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 115.55683 * 2 1 4 4 C 1.53002 * 117.50072 * 214.31756 * 2 1 3 5 5 C 1.52997 * 60.00046 * 252.50317 * 4 2 1 6 6 H 1.08999 * 117.50355 * 107.50707 * 5 4 2 7 7 C 1.52998 * 117.50255 * 252.51247 * 5 4 2 8 8 H 1.09008 * 115.55944 * 342.91613 * 7 5 4 9 9 C 1.53069 * 117.49505 * 197.21062 * 7 5 4 10 10 C 1.53002 * 117.50438 * 128.60486 * 7 5 4 11 11 H 1.08998 * 117.49707 * 359.97438 * 10 7 5 12 12 N 1.46898 * 117.49809 * 214.98274 * 10 7 5 13 13 C 1.46898 * 110.99934 * 155.08804 * 12 10 7 14 14 C 1.52997 * 109.47390 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.46881 * 54.99442 * 14 13 12 16 16 C 1.47201 * 109.47013 * 295.00280 * 14 13 12 17 17 N 7.95998 * 135.81091 * 65.69266 * 2 1 3 18 18 C 1.52997 * 109.47504 * 174.99803 * 14 13 12 19 19 C 1.50701 * 109.47212 * 184.99949 * 18 14 13 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 14 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 14 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47432 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46890 * 120.00210 * 23 21 19 26 26 H 1.48501 * 109.47062 * 240.00257 * 23 21 19 27 27 H 1.09004 * 109.46640 * 274.30411 * 1 2 3 28 28 H 1.08990 * 109.47532 * 34.30714 * 1 2 3 29 29 H 1.09001 * 109.46760 * 154.31526 * 1 2 3 30 30 H 1.09002 * 117.50066 * 145.01556 * 4 2 1 31 31 H 1.08996 * 117.51511 * 359.97438 * 4 2 1 32 32 H 1.09004 * 117.51477 * 145.03331 * 9 7 5 33 33 H 1.09003 * 117.49565 * 359.97438 * 9 7 5 34 34 H 1.00893 * 111.00632 * 31.12664 * 12 10 7 35 35 H 1.09003 * 109.47230 * 59.99766 * 13 12 10 36 36 H 1.08998 * 109.46947 * 299.99824 * 13 12 10 37 37 H 1.09002 * 109.47153 * 64.99951 * 18 14 13 38 38 H 1.09001 * 109.46832 * 305.00142 * 18 14 13 39 39 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2366 -1.1210 0.7648 6 1 1.6117 -1.8587 1.2682 7 6 3.5491 -0.7758 1.4713 8 1 4.4458 -0.8386 0.8546 9 6 3.6784 -1.1574 2.9480 10 6 3.5074 0.3097 2.5487 11 1 2.5449 0.7783 2.7540 12 7 4.6787 1.1875 2.6729 13 6 4.3090 2.4772 3.2710 14 6 5.5520 3.3619 3.3844 15 1 6.0218 3.4556 2.4053 16 6 6.5031 2.7531 4.3287 17 7 7.2376 2.2839 5.0565 18 6 5.1473 4.7478 3.8906 19 6 6.3503 5.6555 3.8858 20 1 7.3077 5.2814 3.5544 21 6 6.2284 6.9639 4.3035 22 7 5.0625 7.4195 4.7065 23 14 7.7194 8.0891 4.2967 24 1 8.9025 7.3404 3.8017 25 1 7.4601 9.2490 3.4063 26 1 7.9808 8.5727 5.6762 27 1 -0.3633 0.0771 1.0248 28 1 -0.3634 0.8488 -0.5792 29 1 -0.3633 -0.9262 -0.4454 30 1 3.1715 -0.8750 -1.2685 31 1 1.6116 -1.8587 -1.2682 32 1 4.6601 -1.4712 3.3030 33 1 2.8281 -1.6538 3.4158 34 1 5.1284 1.3190 1.7794 35 1 3.8902 2.3107 4.2635 36 1 3.5678 2.9703 2.6420 37 1 4.7589 4.6648 4.9057 38 1 4.3772 5.1617 3.2397 39 1 4.9768 8.3399 5.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338563070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:46 Heat of formation + Delta-G solvation = 37.697815 kcal Electronic energy + Delta-G solvation = -17126.074610 eV Core-core repulsion = 14454.717963 eV Total energy + Delta-G solvation = -2671.356647 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.94439 -38.56961 -37.10002 -35.70430 -34.60107 -32.26687 -29.38358 -28.12790 -24.63643 -24.19264 -23.51152 -22.20274 -21.66583 -20.69555 -18.60098 -18.33862 -16.94848 -16.58155 -16.32645 -15.48523 -15.39528 -15.14040 -14.65935 -14.34941 -14.15979 -13.93716 -13.74248 -13.51898 -13.14085 -13.07946 -12.94624 -12.76738 -12.51282 -12.42517 -12.35907 -12.08122 -11.92029 -11.72912 -11.59085 -11.34591 -11.10124 -10.80068 -10.55929 -10.28479 -9.15269 -8.19873 -6.28030 1.39056 1.42293 1.52634 2.06241 2.13067 2.41384 2.66254 2.97582 3.15662 3.22544 3.34484 3.71471 3.93927 4.07775 4.18372 4.19896 4.30077 4.41028 4.46987 4.49154 4.62181 4.72765 4.77964 4.88554 4.95784 4.99618 5.00100 5.02632 5.10640 5.25015 5.34671 5.36772 5.46649 5.50907 5.61551 5.79066 6.08721 6.22101 6.47916 6.82943 6.92710 7.40737 8.91303 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.003972 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.976224 B = 7048.081998 C = 7642.560834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.155 4.155 3 H 0.096 0.904 4 C -0.168 4.168 5 C -0.124 4.124 6 H 0.109 0.891 7 C -0.119 4.119 8 H 0.106 0.894 9 C -0.167 4.167 10 C 0.022 3.978 11 H 0.104 0.896 12 N -0.672 5.672 13 C 0.083 3.917 14 C 0.020 3.980 15 H 0.121 0.879 16 C 0.265 3.735 17 N -0.515 5.515 18 C 0.037 3.963 19 C -0.539 4.539 20 H 0.054 0.946 21 C 0.011 3.989 22 N -0.923 5.923 23 Si 0.949 3.051 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.286 1.286 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.350 0.650 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.000 1.000 38 H 0.037 0.963 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 -15.469 -11.911 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.173 4.173 3 H 0.114 0.886 4 C -0.205 4.205 5 C -0.142 4.142 6 H 0.127 0.873 7 C -0.138 4.138 8 H 0.124 0.876 9 C -0.205 4.205 10 C -0.088 4.088 11 H 0.121 0.879 12 N -0.303 5.303 13 C -0.048 4.048 14 C -0.002 4.002 15 H 0.138 0.862 16 C -0.051 4.051 17 N -0.192 5.192 18 C -0.001 4.001 19 C -0.577 4.577 20 H 0.072 0.928 21 C -0.188 4.188 22 N -0.563 5.563 23 Si 0.774 3.226 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.212 1.212 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.170 0.830 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.019 0.981 38 H 0.055 0.945 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.430 -16.285 -10.162 20.965 hybrid contribution 0.174 1.492 -0.528 1.592 sum -8.256 -14.793 -10.690 20.032 Atomic orbital electron populations 1.21372 0.92238 1.02350 1.01982 1.22426 0.95659 0.94494 1.04723 0.88600 1.23210 1.02722 1.01289 0.93250 1.21860 0.96684 1.01865 0.93806 0.87344 1.22133 0.97735 1.03046 0.90891 0.87600 1.23280 1.02916 0.97660 0.96633 1.22466 0.93264 0.89246 1.03854 0.87864 1.60183 1.26191 1.13715 1.30209 1.21885 0.94449 0.87883 1.00541 1.19192 0.91183 0.94463 0.95359 0.86166 1.29358 0.92642 0.90141 0.92951 1.80957 1.12531 1.13445 1.12305 1.18996 0.96380 0.88632 0.96140 1.21586 0.96193 0.96362 1.43533 0.92755 1.25711 0.98302 0.99807 0.94935 1.70037 1.24899 1.16653 1.44760 0.85640 0.80095 0.79151 0.77666 1.19367 1.19740 1.21173 0.92320 0.91880 0.91945 0.88759 0.87886 0.89628 0.87932 0.82961 0.91346 0.91275 0.98132 0.94500 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 10.19 71.98 0.73 -0.88 16 2 C -0.15 -2.36 6.05 -10.79 -0.07 -2.42 16 3 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.17 -2.32 9.90 30.59 0.30 -2.02 16 5 C -0.12 -1.92 5.59 -10.79 -0.06 -1.98 16 6 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 7 C -0.12 -2.13 5.67 -10.77 -0.06 -2.19 16 8 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 9 C -0.17 -3.37 10.18 30.62 0.31 -3.06 16 10 C 0.02 0.47 5.90 44.92 0.26 0.73 16 11 H 0.10 2.18 7.90 -2.39 -0.02 2.16 16 12 N -0.67 -16.70 6.45 -491.58 -3.17 -19.87 16 13 C 0.08 2.33 4.90 86.30 0.42 2.75 16 14 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 15 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 16 C 0.27 11.07 13.67 89.45 1.22 12.29 16 17 N -0.51 -23.65 18.53 20.00 0.37 -23.28 16 18 C 0.04 1.72 4.42 29.85 0.13 1.85 16 19 C -0.54 -28.54 8.60 25.60 0.22 -28.32 16 20 H 0.05 2.86 7.59 -2.91 -0.02 2.83 16 21 C 0.01 0.62 5.46 84.66 0.46 1.08 16 22 N -0.92 -53.02 13.29 21.45 0.28 -52.73 16 23 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.71 7.90 -2.39 -0.02 0.69 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.20 8.05 -2.39 -0.02 1.18 16 32 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.35 7.69 8.69 -89.70 -0.78 6.91 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -62.27 336.28 3.61 -58.66 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.24 Total: 13.22 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 3.86 Total: -21.48 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -2.51 Total: -95.89 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -62.27 3.61 -58.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338563070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.358 kcal (2) G-P(sol) polarization free energy of solvation -62.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds