Wall clock time and date at job start Mon Mar 30 2020 18:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86795 * 120.00032 * 2 1 4 4 H 1.48497 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47031 * 299.99730 * 3 2 1 6 6 H 1.48498 * 109.47402 * 60.00008 * 3 2 1 7 7 C 1.38647 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00000 * 180.02562 * 7 2 1 9 9 O 1.34837 * 120.00329 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00381 * 185.05824 * 9 7 2 11 11 C 1.38878 * 120.06623 * 354.46903 * 10 9 7 12 12 C 1.38105 * 119.93073 * 180.02562 * 11 10 9 13 13 C 1.38293 * 120.06703 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.93051 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.46742 * 90.00584 * 14 13 12 16 16 C 1.48798 * 110.99983 * 190.00080 * 15 14 13 17 17 C 1.54638 * 102.88470 * 202.94454 * 16 15 14 18 18 C 1.54143 * 104.45836 * 22.13491 * 17 16 15 19 19 O 1.43964 * 106.39580 * 1.56872 * 18 17 16 20 20 C 1.38305 * 120.14029 * 0.25687 * 13 12 11 21 21 C 1.38104 * 120.06581 * 359.45125 * 20 13 12 22 22 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.03509 * 359.97438 * 11 10 9 24 24 H 1.08005 * 119.96498 * 179.97438 * 12 11 10 25 25 H 1.08995 * 109.46848 * 330.00900 * 14 13 12 26 26 H 1.08999 * 109.47370 * 210.00495 * 14 13 12 27 27 H 1.09003 * 110.73031 * 84.59774 * 16 15 14 28 28 H 1.08997 * 110.88673 * 321.36896 * 16 15 14 29 29 H 1.08998 * 110.44032 * 263.38760 * 17 16 15 30 30 H 1.09005 * 110.43511 * 140.87731 * 17 16 15 31 31 H 1.08999 * 110.07980 * 120.82058 * 18 17 16 32 32 H 1.09007 * 110.07869 * 242.31831 * 18 17 16 33 33 H 1.07998 * 119.96710 * 179.70014 * 20 13 12 34 34 H 1.08001 * 120.02991 * 180.27449 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2126 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4571 -3.4396 0.0922 12 6 4.2023 -4.5973 0.1998 13 6 3.5686 -5.8206 0.3202 14 6 4.3849 -7.0820 0.4368 15 7 4.6570 -7.3599 1.8534 16 6 5.6549 -8.4538 2.0001 17 6 5.3697 -8.9924 3.4214 18 6 3.9192 -8.5599 3.7129 19 8 3.4521 -7.8819 2.5320 20 6 2.1873 -5.8893 0.3280 21 6 1.4365 -4.7346 0.2268 22 1 -0.4850 0.8400 -0.0004 23 1 3.9526 -2.4847 -0.0031 24 1 5.2812 -4.5473 0.1890 25 1 5.3272 -6.9556 -0.0962 26 1 3.8310 -7.9146 0.0032 27 1 6.6698 -8.0619 1.9325 28 1 5.4923 -9.2308 1.2532 29 1 6.0529 -8.5439 4.1426 30 1 5.4541 -10.0790 3.4406 31 1 3.3005 -9.4350 3.9115 32 1 3.8950 -7.8833 4.5673 33 1 1.6953 -6.8465 0.4173 34 1 0.3579 -4.7885 0.2374 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298953515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:19 Heat of formation + Delta-G solvation = 6.142090 kcal Electronic energy + Delta-G solvation = -17494.910060 eV Core-core repulsion = 14588.633297 eV Total energy + Delta-G solvation = -2906.276763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11692 -38.52724 -36.54141 -33.27909 -32.21904 -31.77211 -30.07584 -29.07297 -25.82156 -24.85160 -22.78426 -21.93592 -21.61531 -20.29396 -17.90932 -16.94248 -16.35361 -16.20603 -15.56747 -14.67502 -14.47867 -14.39800 -13.75472 -13.54085 -13.41566 -12.92714 -12.75812 -12.58667 -12.47277 -11.98728 -11.88327 -11.61624 -11.22805 -11.17017 -10.73704 -10.63637 -10.49785 -10.37377 -10.21975 -9.25634 -8.81200 -8.66560 -8.06643 -7.10393 -6.39816 -3.98352 2.30772 2.33661 3.04057 3.16509 3.17753 3.22856 4.01217 4.27808 4.45148 4.68116 4.72648 4.96752 5.15934 5.19562 5.32115 5.38252 5.40826 5.43716 5.64936 5.66341 5.70014 5.83282 5.84030 5.96877 6.30194 6.48754 6.57753 6.70860 6.81407 7.01123 7.13880 7.34478 7.48107 7.51952 7.91820 8.05923 9.06130 9.77549 10.78537 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042038 B = 0.004319 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.906243 B = 6481.116079 C = 6629.663745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.157 3.843 11 C -0.237 4.237 12 C -0.053 4.053 13 C -0.177 4.177 14 C 0.085 3.915 15 N -0.315 5.315 16 C -0.009 4.009 17 C -0.145 4.145 18 C 0.044 3.956 19 O -0.248 6.248 20 C -0.052 4.052 21 C -0.195 4.195 22 H 0.269 0.731 23 H 0.126 0.874 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 -14.962 3.640 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.083 6.083 10 C 0.104 3.896 11 C -0.256 4.256 12 C -0.072 4.072 13 C -0.178 4.178 14 C -0.042 4.042 15 N -0.082 5.082 16 C -0.138 4.138 17 C -0.184 4.184 18 C -0.034 4.034 19 O -0.253 6.253 20 C -0.070 4.070 21 C -0.214 4.214 22 H 0.079 0.921 23 H 0.144 0.856 24 H 0.123 0.877 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.335 -14.215 3.778 17.976 hybrid contribution 0.452 -0.010 -0.273 0.528 sum 10.787 -14.226 3.505 18.194 Atomic orbital electron populations 1.70057 1.05945 1.27457 1.46458 1.25286 0.95835 0.98806 0.96659 0.85649 0.79145 0.80438 0.78196 1.19109 1.20202 1.20169 1.21383 0.91836 0.80863 1.52582 0.89022 1.83979 1.34381 1.11461 1.78477 1.19394 0.90320 0.87992 0.91942 1.21119 0.93782 0.98802 1.11887 1.20537 0.98129 0.91627 0.96895 1.18865 0.93241 0.93158 1.12536 1.21275 0.99873 0.96256 0.86833 1.71936 0.94039 1.28011 1.14239 1.23873 0.98267 0.94620 0.97057 1.22971 0.97384 1.01352 0.96645 1.23114 0.94100 0.96408 0.89798 1.91764 1.21880 1.75076 1.36531 1.20457 0.92906 0.96667 0.97018 1.20176 0.99490 0.90295 1.11447 0.92144 0.85602 0.87657 0.89108 0.92806 0.88068 0.92573 0.90056 0.90540 0.90273 0.91805 0.87358 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.39 -11.18 9.49 30.88 0.29 -10.89 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 10 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.24 -5.35 9.17 -39.39 -0.36 -5.72 16 12 C -0.05 -1.02 9.69 -39.61 -0.38 -1.41 16 13 C -0.18 -3.23 5.36 -104.57 -0.56 -3.80 16 14 C 0.09 1.23 5.25 -4.97 -0.03 1.20 16 15 N -0.31 -4.53 5.84 -112.66 -0.66 -5.19 16 16 C -0.01 -0.10 6.82 -1.91 -0.01 -0.11 16 17 C -0.14 -1.26 7.04 -25.27 -0.18 -1.44 16 18 C 0.04 0.50 7.92 37.75 0.30 0.80 16 19 O -0.25 -3.89 11.88 -14.79 -0.18 -4.06 16 20 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 21 C -0.19 -4.38 9.99 -39.40 -0.39 -4.78 16 22 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 23 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 24 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 25 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 26 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.52 7.99 -51.93 -0.42 0.10 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 292.75 15.07 4.41 4.41 Total: -1.00 -32.55 292.75 -7.09 -39.64 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.34 Total: 2.53 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.06 Total: -22.84 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.10 Total: -30.25 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.18 Total: -9.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.55 -7.09 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298953515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.778 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds