Wall clock time and date at job start Mon Mar 30 2020 18:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34170 * 125.42777 * 2 1 4 4 C 1.47028 * 105.95995 * 180.14094 * 3 2 1 5 5 C 1.47294 * 127.19874 * 179.83096 * 4 3 2 6 6 O 1.21647 * 120.00161 * 216.16423 * 5 4 3 7 7 N 1.34775 * 120.00250 * 36.16211 * 5 4 3 8 8 C 1.36962 * 120.00737 * 175.28963 * 7 5 4 9 9 H 1.08004 * 119.99338 * 326.93386 * 8 7 5 10 10 C 1.38971 * 120.00307 * 146.93470 * 8 7 5 11 11 N 1.31409 * 120.00571 * 357.94375 * 10 8 7 12 12 Si 1.86803 * 119.99790 * 177.94209 * 10 8 7 13 13 H 1.48500 * 109.47264 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47287 * 300.00095 * 12 10 8 15 15 H 1.48499 * 109.47450 * 60.00289 * 12 10 8 16 16 C 1.46505 * 119.99439 * 355.28582 * 7 5 4 17 17 C 1.53003 * 117.49619 * 135.22522 * 16 7 5 18 18 C 1.53001 * 117.49907 * 66.56906 * 16 7 5 19 19 C 1.36501 * 105.60442 * 359.57272 * 4 3 2 20 20 C 1.50699 * 125.80814 * 180.26160 * 19 4 3 21 21 O 1.33670 * 108.38012 * 0.25994 * 19 4 3 22 22 H 1.08998 * 109.47056 * 180.31235 * 1 2 3 23 23 H 1.08997 * 109.47270 * 300.31733 * 1 2 3 24 24 H 1.09002 * 109.47060 * 60.31856 * 1 2 3 25 25 H 1.08001 * 127.01970 * 359.97438 * 3 2 1 26 26 H 0.96996 * 120.00392 * 175.01948 * 11 10 8 27 27 H 1.08994 * 115.55354 * 280.88975 * 16 7 5 28 28 H 1.09000 * 117.49939 * 359.97438 * 17 16 7 29 29 H 1.08998 * 117.50202 * 145.02049 * 17 16 7 30 30 H 1.09000 * 117.49931 * 214.97941 * 18 16 7 31 31 H 1.09003 * 117.49813 * 359.97095 * 18 16 7 32 32 H 1.09000 * 109.47599 * 89.99972 * 20 19 4 33 33 H 1.09002 * 109.47002 * 209.99500 * 20 19 4 34 34 H 1.09000 * 109.47532 * 329.99417 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2848 1.0933 0.0000 4 6 3.6710 0.6033 -0.0035 5 6 4.9016 1.4127 -0.0083 6 8 5.8753 1.0355 -0.6323 7 7 4.9489 2.5712 0.6787 8 6 6.1212 3.2755 0.7542 9 1 7.0656 2.7517 0.7704 10 6 6.0954 4.6638 0.8099 11 7 4.9488 5.3028 0.7494 12 14 7.6910 5.6218 0.9707 13 1 7.3936 7.0762 1.0079 14 1 8.3824 5.2252 2.2236 15 1 8.5657 5.3256 -0.1923 16 6 3.7462 3.0773 1.3448 17 6 3.8989 3.6061 2.7725 18 6 3.1974 2.2688 2.5221 19 6 3.5790 -0.7586 0.0046 20 6 4.7390 -1.7206 0.0103 21 8 2.2850 -1.0937 0.0065 22 1 -0.3633 -1.0276 0.0056 23 1 -0.3634 0.5187 0.8871 24 1 -0.3633 0.5089 -0.8928 25 1 1.9590 2.1230 -0.0004 26 1 4.9238 6.2660 0.8607 27 1 3.0252 3.5768 0.6977 28 1 4.8940 3.5769 3.2162 29 1 3.2781 4.4530 3.0647 30 1 2.1153 2.2365 2.6496 31 1 3.7309 1.3600 2.8007 32 1 5.0187 -1.9465 1.0393 33 1 4.4505 -2.6407 -0.4980 34 1 5.5869 -1.2707 -0.5062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299192284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:20 Heat of formation + Delta-G solvation = -7.749084 kcal Electronic energy + Delta-G solvation = -18697.019370 eV Core-core repulsion = 15790.140241 eV Total energy + Delta-G solvation = -2906.879129 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.39760 -40.37700 -37.89947 -34.99962 -33.92602 -33.64278 -32.97799 -30.29616 -27.46939 -25.78007 -24.04488 -23.14518 -22.90769 -21.79464 -19.52756 -18.77724 -17.89615 -17.31548 -17.02674 -16.72521 -15.94435 -15.82725 -15.17326 -14.97856 -14.18567 -14.17603 -14.07120 -13.84012 -13.65055 -13.40417 -13.21683 -13.00841 -12.91483 -12.58312 -12.36370 -12.24517 -12.13705 -11.59477 -11.11841 -10.73280 -10.47837 -10.28064 -9.61564 -9.17217 -8.26917 -6.03748 0.61054 1.25288 1.38733 1.44386 1.49337 1.91594 2.26361 2.38736 2.99753 3.08754 3.28623 3.71819 3.95820 4.06994 4.21978 4.38089 4.40789 4.49683 4.60632 4.62236 4.74156 4.81142 4.82300 4.84450 5.02968 5.09736 5.15823 5.34118 5.37814 5.42526 5.47641 5.59763 6.11643 6.25661 6.55847 7.16503 7.44185 8.04619 8.73919 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.007778 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.758652 B = 3599.195819 C = 4176.885546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.015 4.015 3 C -0.191 4.191 4 C -0.228 4.228 5 C 0.511 3.489 6 O -0.629 6.629 7 N -0.421 5.421 8 C -0.347 4.347 9 H 0.065 0.935 10 C 0.013 3.987 11 N -0.878 5.878 12 Si 0.981 3.019 13 H -0.268 1.268 14 H -0.266 1.266 15 H -0.281 1.281 16 C 0.116 3.884 17 C -0.141 4.141 18 C -0.173 4.173 19 C 0.029 3.971 20 C -0.073 4.073 21 O -0.177 6.177 22 H 0.089 0.911 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.154 0.846 26 H 0.273 0.727 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 -7.143 3.225 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 C -0.210 4.210 4 C -0.232 4.232 5 C 0.302 3.698 6 O -0.518 6.518 7 N -0.138 5.138 8 C -0.475 4.475 9 H 0.083 0.917 10 C -0.192 4.192 11 N -0.514 5.514 12 Si 0.805 3.195 13 H -0.192 1.192 14 H -0.191 1.191 15 H -0.207 1.207 16 C 0.012 3.988 17 C -0.179 4.179 18 C -0.211 4.211 19 C -0.023 4.023 20 C -0.129 4.129 21 O -0.075 6.075 22 H 0.108 0.892 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.172 0.828 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.380 -7.342 2.893 13.040 hybrid contribution 1.288 1.069 -0.092 1.676 sum -9.092 -6.274 2.802 11.396 Atomic orbital electron populations 1.20497 0.81265 1.05232 1.05136 1.22927 0.95439 0.82681 1.05275 1.22687 0.89936 1.00154 1.08250 1.21278 0.94389 0.93882 1.13665 1.17793 0.87067 0.83759 0.81186 1.90529 1.39518 1.73811 1.47895 1.43060 1.09360 1.18806 1.42585 1.19404 0.85575 0.89515 1.52984 0.91739 1.26025 1.01134 0.96829 0.95163 1.69936 1.25918 1.09566 1.45971 0.85187 0.78124 0.77401 0.78767 1.19204 1.19138 1.20702 1.21037 0.88823 1.00594 0.88380 1.22694 1.00330 0.96331 0.98546 1.23389 1.00676 0.94473 1.02548 1.22832 0.83682 0.93762 1.02013 1.20463 0.91081 0.96952 1.04403 1.83636 1.15612 1.35871 1.72390 0.89163 0.87840 0.88370 0.82850 0.91705 0.88990 0.91528 0.88211 0.86191 0.91199 0.88987 0.87749 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.40 71.24 0.74 -0.37 16 2 C -0.01 -0.43 7.28 24.76 0.18 -0.25 16 3 C -0.19 -6.86 8.32 23.65 0.20 -6.66 16 4 C -0.23 -9.99 5.22 -19.00 -0.10 -10.09 16 5 C 0.51 27.82 7.39 86.63 0.64 28.46 16 6 O -0.63 -38.22 15.37 -4.18 -0.06 -38.28 16 7 N -0.42 -23.03 2.90 -616.93 -1.79 -24.82 16 8 C -0.35 -20.33 8.55 84.07 0.72 -19.61 16 9 H 0.06 4.01 7.64 -2.91 -0.02 3.99 16 10 C 0.01 0.68 4.99 84.93 0.42 1.11 16 11 N -0.88 -46.45 10.69 21.67 0.23 -46.22 16 12 Si 0.98 43.31 29.56 68.60 2.03 45.34 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 C 0.12 5.32 2.34 44.99 0.11 5.42 16 17 C -0.14 -5.88 8.60 30.62 0.26 -5.62 16 18 C -0.17 -6.40 8.20 30.62 0.25 -6.15 16 19 C 0.03 1.10 7.37 25.28 0.19 1.29 16 20 C -0.07 -2.32 10.22 71.24 0.73 -1.59 16 21 O -0.18 -5.75 10.52 4.25 0.04 -5.71 16 22 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.15 5.36 6.31 -2.91 -0.02 5.34 16 26 H 0.27 13.54 8.32 -92.71 -0.77 12.77 16 27 H 0.09 4.32 6.99 -2.39 -0.02 4.31 16 28 H 0.07 3.06 7.90 -2.39 -0.02 3.04 16 29 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 31 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.08 2.98 6.60 -2.39 -0.02 2.97 16 Total: -1.00 -71.19 288.13 5.89 -65.30 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.10 Total: 18.46 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.34 Total: -14.08 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -1.56 Total: -71.03 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.02 Total: -43.99 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -71.19 5.89 -65.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299192284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.551 kcal (2) G-P(sol) polarization free energy of solvation -71.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds