Wall clock time and date at job start Mon Mar 30 2020 18:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.93791 * 2 1 4 4 C 1.38125 * 120.05202 * 180.25765 * 3 2 1 5 5 C 1.38755 * 119.93999 * 359.48967 * 4 3 2 6 6 O 1.35906 * 120.05296 * 180.27973 * 5 4 3 7 7 C 1.42901 * 117.00155 * 359.97438 * 6 5 4 8 8 C 1.50701 * 109.47504 * 180.02562 * 7 6 5 9 9 O 1.21290 * 119.99505 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00095 * 180.02562 * 8 7 6 11 11 C 1.37091 * 119.99754 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00285 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00201 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99548 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00409 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46998 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46796 * 119.99914 * 15 13 11 18 18 H 1.48497 * 109.47260 * 240.00087 * 15 13 11 19 19 C 1.38709 * 119.89505 * 0.25905 * 5 4 3 20 20 C 1.38167 * 119.93745 * 359.97438 * 19 5 4 21 21 C 1.50702 * 119.96727 * 180.02562 * 20 19 5 22 22 H 1.08995 * 109.47080 * 270.24804 * 1 2 3 23 23 H 1.08993 * 109.47243 * 30.25404 * 1 2 3 24 24 H 1.09001 * 109.46983 * 150.25353 * 1 2 3 25 25 H 1.07995 * 119.98087 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.03152 * 179.77429 * 4 3 2 27 27 H 1.09003 * 109.47208 * 300.00726 * 7 6 5 28 28 H 1.09006 * 109.47043 * 60.00389 * 7 6 5 29 29 H 0.97003 * 119.99948 * 359.97438 * 10 8 7 30 30 H 0.97000 * 119.99982 * 180.02562 * 14 13 11 31 31 H 1.07993 * 120.02876 * 180.02562 * 19 5 4 32 32 H 1.08996 * 109.47216 * 90.00423 * 21 20 19 33 33 H 1.09001 * 109.47177 * 210.00403 * 21 20 19 34 34 H 1.09001 * 109.47352 * 329.99926 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 -0.0054 5 6 4.2734 0.0002 -0.0001 6 8 5.6324 0.0002 0.0004 7 6 6.2812 1.2735 -0.0053 8 6 7.7752 1.0761 -0.0045 9 8 8.2388 -0.0446 0.0009 10 7 8.5961 2.1450 -0.0088 11 6 9.9552 1.9654 -0.0086 12 1 10.3681 0.9675 -0.0046 13 6 10.8017 3.0674 -0.0136 14 7 10.2993 4.2817 -0.0190 15 14 12.6536 2.8227 -0.0126 16 1 12.9609 1.3699 -0.0067 17 1 13.2359 3.4465 -1.2280 18 1 13.2361 3.4573 1.1971 19 6 3.5788 -1.2005 0.0052 20 6 2.1971 -1.1978 0.0057 21 6 1.4418 -2.5019 0.0120 22 1 -0.3633 0.0044 1.0276 23 1 -0.3633 0.8876 -0.5177 24 1 -0.3633 -0.8923 -0.5099 25 1 1.6559 2.1329 0.0004 26 1 4.1171 2.1372 -0.0091 27 1 5.9885 1.8264 -0.8979 28 1 5.9880 1.8346 0.8820 29 1 8.2253 3.0414 -0.0128 30 1 10.8901 5.0510 -0.0228 31 1 4.1175 -2.1365 0.0097 32 1 1.2600 -2.8115 1.0411 33 1 0.4894 -2.3726 -0.5022 34 1 2.0296 -3.2647 -0.4986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299497383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:23 Heat of formation + Delta-G solvation = -81.010766 kcal Electronic energy + Delta-G solvation = -17123.239392 eV Core-core repulsion = 14213.183397 eV Total energy + Delta-G solvation = -2910.055994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.35098 -40.13269 -38.66940 -36.08139 -33.58536 -33.44946 -32.90521 -30.08662 -28.16522 -26.87444 -26.37291 -23.19368 -22.02497 -21.03653 -20.02410 -18.97629 -17.76296 -17.24984 -17.07439 -16.42354 -16.21848 -15.79018 -15.35178 -15.10724 -14.81093 -14.70039 -14.24663 -13.68093 -13.57831 -13.53560 -13.11628 -13.01580 -12.83451 -12.73593 -12.48965 -12.13088 -12.07224 -11.72106 -11.70956 -11.59836 -10.50492 -10.13222 -9.74281 -8.97285 -8.54626 -6.04978 0.36395 0.46025 1.33053 1.40814 1.54717 1.85883 1.89303 2.33742 2.75692 3.10928 3.22371 3.82008 3.90972 3.98278 4.11218 4.18225 4.22691 4.31213 4.36781 4.46308 4.76566 4.82275 4.85580 4.98294 5.04505 5.22505 5.24658 5.34968 5.42812 5.45534 5.73656 5.84381 5.94543 6.39039 6.52356 7.01830 7.38668 7.93864 8.62677 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.059507 B = 0.003743 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.418799 B = 7479.427624 C = 7924.097049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.134 4.134 3 C -0.079 4.079 4 C -0.221 4.221 5 C 0.101 3.899 6 O -0.321 6.321 7 C 0.067 3.933 8 C 0.433 3.567 9 O -0.625 6.625 10 N -0.556 5.556 11 C -0.341 4.341 12 H 0.080 0.920 13 C -0.007 4.007 14 N -0.914 5.914 15 Si 0.997 3.003 16 H -0.274 1.274 17 H -0.268 1.268 18 H -0.267 1.267 19 C -0.173 4.173 20 C -0.054 4.054 21 C -0.115 4.115 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.140 0.860 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.401 0.599 30 H 0.281 0.719 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.066 -3.203 0.034 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.097 4.097 4 C -0.240 4.240 5 C 0.056 3.944 6 O -0.234 6.234 7 C -0.012 4.012 8 C 0.220 3.780 9 O -0.512 6.512 10 N -0.194 5.194 11 C -0.470 4.470 12 H 0.098 0.902 13 C -0.207 4.207 14 N -0.553 5.553 15 Si 0.820 3.180 16 H -0.199 1.199 17 H -0.193 1.193 18 H -0.192 1.192 19 C -0.191 4.191 20 C -0.054 4.054 21 C -0.171 4.171 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.169 0.831 26 H 0.157 0.843 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.236 0.764 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.542 -3.908 0.036 19.929 hybrid contribution 1.211 0.664 0.016 1.381 sum -18.331 -3.244 0.052 18.616 Atomic orbital electron populations 1.20830 0.88637 1.03837 1.03068 1.20090 0.97912 0.91964 1.03452 1.21164 0.92555 0.99056 0.96881 1.21495 0.96432 0.96762 1.09273 1.19458 0.81584 0.95754 0.97621 1.86124 1.17406 1.31073 1.88808 1.22292 0.89418 0.84814 1.04650 1.20315 0.88740 0.85089 0.83858 1.90521 1.78291 1.25571 1.56848 1.41713 1.05996 1.07604 1.64098 1.19734 0.81783 0.94667 1.50786 0.90223 1.26094 1.05124 0.93937 0.95594 1.69663 1.38134 0.98385 1.49165 0.84819 0.76228 0.78373 0.78590 1.19870 1.19253 1.19243 1.20489 0.94316 0.95977 1.08368 1.19880 0.91543 0.97052 0.96930 1.20939 1.00431 0.92263 1.03487 0.90456 0.90649 0.90116 0.83097 0.84263 0.87766 0.87760 0.76401 0.90893 0.86042 0.89863 0.88920 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.60 71.24 0.68 -0.67 16 2 C -0.13 -2.75 5.88 -19.85 -0.12 -2.86 16 3 C -0.08 -1.72 9.69 22.25 0.22 -1.50 16 4 C -0.22 -6.01 9.04 22.37 0.20 -5.81 16 5 C 0.10 3.38 6.69 22.51 0.15 3.53 16 6 O -0.32 -13.23 9.67 -73.45 -0.71 -13.94 16 7 C 0.07 2.53 5.22 71.24 0.37 2.90 16 8 C 0.43 22.03 7.86 87.66 0.69 22.72 16 9 O -0.63 -37.89 16.07 15.98 0.26 -37.63 16 10 N -0.56 -29.05 5.29 -306.99 -1.62 -30.67 16 11 C -0.34 -19.56 9.68 84.04 0.81 -18.75 16 12 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 13 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 14 N -0.91 -48.43 13.05 21.66 0.28 -48.15 16 15 Si 1.00 42.56 29.55 68.60 2.03 44.59 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 19 C -0.17 -5.21 9.64 22.37 0.22 -4.99 16 20 C -0.05 -1.25 5.88 -19.88 -0.12 -1.36 16 21 C -0.12 -1.80 9.60 71.24 0.68 -1.12 16 22 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 24 H 0.08 0.81 5.94 -2.39 -0.01 0.80 16 25 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 26 H 0.14 3.35 6.30 -2.91 -0.02 3.33 16 27 H 0.10 3.35 7.66 -2.39 -0.02 3.33 16 28 H 0.10 3.35 7.66 -2.38 -0.02 3.33 16 29 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 30 H 0.28 13.83 8.31 -92.71 -0.77 13.05 16 31 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.05 5.94 -2.39 -0.01 1.03 16 34 H 0.07 1.06 8.08 -2.39 -0.02 1.05 16 Total: -1.00 -71.89 294.67 4.88 -67.01 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.39 Total: 26.59 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 4.26 Total: -7.79 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.34 Total: -78.82 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.45 Total: -51.57 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.89 4.88 -67.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299497383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.004 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds