Wall clock time and date at job start Mon Mar 30 2020 18:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38296 * 119.97038 * 2 1 4 4 C 1.38247 * 120.11050 * 179.97438 * 3 2 1 5 5 C 1.38166 * 120.05489 * 0.02562 * 4 3 2 6 6 C 1.38705 * 119.94595 * 0.02562 * 5 4 3 7 7 O 1.35900 * 120.05656 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00309 * 185.35574 * 7 6 5 9 9 H 1.09002 * 109.47417 * 35.32153 * 8 7 6 10 10 C 1.53004 * 109.47171 * 275.32370 * 8 7 6 11 11 C 1.50695 * 109.47682 * 155.32307 * 8 7 6 12 12 O 1.21300 * 119.99626 * 5.00220 * 11 8 7 13 13 N 1.34779 * 120.00524 * 184.99949 * 11 8 7 14 14 C 1.37094 * 120.00245 * 179.97438 * 13 11 8 15 15 H 1.07999 * 119.99748 * 0.02562 * 14 13 11 16 16 C 1.38942 * 120.00038 * 179.97438 * 14 13 11 17 17 N 1.31421 * 120.00290 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00066 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47142 * 89.99953 * 18 16 14 20 20 H 1.48505 * 109.47361 * 209.99562 * 18 16 14 21 21 H 1.48497 * 109.47154 * 329.99969 * 18 16 14 22 22 C 1.38125 * 119.97677 * 180.29511 * 2 1 3 23 23 H 1.08995 * 109.47290 * 90.00502 * 1 2 3 24 24 H 1.09007 * 109.46949 * 210.00062 * 1 2 3 25 25 H 1.09004 * 109.47579 * 329.99833 * 1 2 3 26 26 H 1.07999 * 119.94282 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.96928 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.02441 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47580 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.46964 * 59.99665 * 10 8 7 31 31 H 1.08998 * 109.47016 * 299.99719 * 10 8 7 32 32 H 0.96997 * 119.99504 * 0.02562 * 13 11 8 33 33 H 0.96998 * 119.99906 * 179.97438 * 17 16 14 34 34 H 1.08000 * 120.02671 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0072 0.0005 6 6 3.5846 -1.1957 -0.0005 7 8 4.2658 -2.3716 0.0000 8 6 3.4943 -3.5684 -0.1200 9 1 2.6443 -3.3884 -0.7783 10 6 2.9892 -3.9903 1.2613 11 6 4.3531 -4.6641 -0.6969 12 8 5.5342 -4.4692 -0.8930 13 7 3.8090 -5.8607 -0.9949 14 6 4.5903 -6.8573 -1.5202 15 1 5.6418 -6.6837 -1.6949 16 6 4.0294 -8.0909 -1.8270 17 7 4.7782 -9.0461 -2.3310 18 14 2.2108 -8.3914 -1.5242 19 1 1.4388 -8.0177 -2.7366 20 1 1.9902 -9.8281 -1.2203 21 1 1.7575 -7.5671 -0.3752 22 6 2.1970 -1.1965 -0.0062 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 1.6564 2.1325 -0.0004 27 1 4.1174 2.1383 0.0001 28 1 5.3551 0.0104 0.0005 29 1 2.4003 -4.9029 1.1697 30 1 2.3679 -3.1978 1.6785 31 1 3.8390 -4.1704 1.9195 32 1 2.8645 -6.0164 -0.8384 33 1 4.3867 -9.9075 -2.5447 34 1 1.6571 -2.1318 -0.0114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299714981.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:26 Heat of formation + Delta-G solvation = -73.115900 kcal Electronic energy + Delta-G solvation = -17696.557804 eV Core-core repulsion = 14786.844157 eV Total energy + Delta-G solvation = -2909.713647 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56509 -40.19294 -38.44170 -36.13467 -34.17741 -33.65556 -32.42644 -30.83966 -27.77364 -27.37098 -25.27021 -23.25402 -22.38582 -21.34437 -20.41955 -18.93335 -17.88375 -17.24157 -16.79703 -16.61406 -16.40766 -15.59316 -15.30094 -15.11959 -14.78748 -14.38878 -14.26727 -14.20271 -13.96842 -13.39107 -13.27278 -13.02953 -12.89357 -12.64337 -12.46879 -12.30380 -11.99207 -11.90020 -11.70910 -11.60410 -10.52299 -10.35450 -9.73699 -9.10973 -8.47243 -6.11019 0.39054 0.49726 1.27570 1.32604 1.43041 1.74775 1.87607 2.19660 2.82223 2.93348 3.06971 3.63514 3.84992 3.90940 3.95932 4.01725 4.20482 4.38794 4.45829 4.58183 4.64394 4.75909 4.84424 4.88806 4.96690 5.07491 5.31581 5.39541 5.45329 5.52086 5.67255 5.83051 5.92053 6.39695 6.53775 6.76258 7.24332 7.77927 8.69844 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.005238 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.925174 B = 5344.405779 C = 5922.465454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.164 4.164 4 C -0.075 4.075 5 C -0.184 4.184 6 C 0.108 3.892 7 O -0.316 6.316 8 C 0.084 3.916 9 H 0.115 0.885 10 C -0.167 4.167 11 C 0.447 3.553 12 O -0.616 6.616 13 N -0.572 5.572 14 C -0.337 4.337 15 H 0.055 0.945 16 C -0.008 4.008 17 N -0.927 5.927 18 Si 0.961 3.039 19 H -0.253 1.253 20 H -0.270 1.270 21 H -0.226 1.226 22 C -0.222 4.222 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.393 0.607 33 H 0.283 0.717 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.994 17.889 7.158 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.182 4.182 4 C -0.092 4.092 5 C -0.202 4.202 6 C 0.063 3.937 7 O -0.230 6.230 8 C 0.024 3.976 9 H 0.133 0.867 10 C -0.225 4.225 11 C 0.234 3.766 12 O -0.501 6.501 13 N -0.213 5.213 14 C -0.465 4.465 15 H 0.073 0.927 16 C -0.208 4.208 17 N -0.566 5.566 18 Si 0.780 3.220 19 H -0.178 1.178 20 H -0.195 1.195 21 H -0.149 1.149 22 C -0.241 4.241 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.169 0.831 27 H 0.172 0.828 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.092 0.908 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.964 17.762 6.965 24.247 hybrid contribution -0.043 -0.957 -0.230 0.985 sum -15.007 16.805 6.735 23.515 Atomic orbital electron populations 1.20887 0.88698 1.04108 1.03379 1.20121 0.97674 0.91972 0.95354 1.21327 0.94022 0.98528 1.04313 1.21249 0.94756 0.97039 0.96183 1.20673 1.00627 0.90576 1.08371 1.19490 0.91868 0.85568 0.96737 1.86194 1.36499 1.12520 1.87763 1.22111 0.92889 0.82513 1.00102 0.86747 1.22338 1.02317 1.04122 0.93701 1.20417 0.88544 0.84224 0.83374 1.90567 1.19023 1.82074 1.58387 1.41794 1.10989 1.10895 1.57630 1.18999 0.94322 0.92406 1.40813 0.92683 1.26138 1.05327 0.93870 0.95446 1.69795 1.39194 1.05110 1.42537 0.85430 0.76086 0.79678 0.80825 1.17761 1.19510 1.14922 1.21398 0.92049 1.00493 1.10138 0.90116 0.90719 0.89650 0.83087 0.82812 0.86161 0.88626 0.88397 0.92345 0.77087 0.90776 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.23 0.71 -0.70 16 2 C -0.05 -0.99 5.88 -19.88 -0.12 -1.11 16 3 C -0.16 -2.96 9.70 22.29 0.22 -2.75 16 4 C -0.07 -1.54 10.04 22.25 0.22 -1.31 16 5 C -0.18 -5.17 9.99 22.36 0.22 -4.94 16 6 C 0.11 3.39 6.60 22.50 0.15 3.54 16 7 O -0.32 -12.33 9.34 -73.44 -0.69 -13.02 16 8 C 0.08 2.95 2.64 29.85 0.08 3.03 16 9 H 0.12 3.29 6.31 -2.39 -0.02 3.28 16 10 C -0.17 -4.55 9.12 71.98 0.66 -3.90 16 11 C 0.45 21.80 7.13 87.66 0.63 22.43 16 12 O -0.62 -37.47 16.08 15.90 0.26 -37.21 16 13 N -0.57 -27.44 5.05 -306.99 -1.55 -28.99 16 14 C -0.34 -19.90 10.16 84.04 0.85 -19.04 16 15 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 16 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 17 N -0.93 -55.31 13.96 21.66 0.30 -55.01 16 18 Si 0.96 37.40 27.74 68.60 1.90 39.30 16 19 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 21 H -0.23 -7.21 6.52 99.48 0.65 -6.56 16 22 C -0.22 -5.45 7.89 22.37 0.18 -5.27 16 23 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.83 8.09 -2.38 -0.02 0.81 16 25 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 26 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 28 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.10 2.21 7.93 -2.39 -0.02 2.19 16 30 H 0.10 2.07 6.90 -2.39 -0.02 2.06 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.39 15.18 5.55 -92.71 -0.51 14.66 16 33 H 0.28 15.29 8.31 -92.71 -0.77 14.51 16 34 H 0.14 2.98 5.43 -2.91 -0.02 2.96 16 Total: -1.00 -79.70 291.99 5.03 -74.67 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.54 Total: 30.27 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.27 Total: -10.00 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.25 Total: -84.00 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.43 Total: -50.23 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 1.90 Total: 39.30 kcal Total: -79.70 5.03 -74.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299714981.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.550 kcal (2) G-P(sol) polarization free energy of solvation -79.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds