Wall clock time and date at job start Mon Mar 30 2020 18:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00041 * 2 1 4 4 H 1.48502 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46952 * 299.99962 * 3 2 1 6 6 H 1.48499 * 109.46817 * 59.99832 * 3 2 1 7 7 C 1.37882 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99835 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47295 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00310 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00205 * 180.02562 * 11 10 9 14 14 C 1.47579 * 134.49439 * 180.02562 * 13 11 10 15 15 C 1.53950 * 86.11621 * 204.63969 * 14 13 11 16 16 O 1.42898 * 113.74200 * 221.94007 * 15 14 13 17 17 C 1.42903 * 114.00309 * 208.07210 * 16 15 14 18 18 F 1.39895 * 109.47035 * 300.00254 * 17 16 15 19 19 F 1.39904 * 109.46767 * 60.00075 * 17 16 15 20 20 C 1.47925 * 134.49772 * 0.02562 * 13 11 10 21 21 H 0.96995 * 120.00544 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47319 * 60.00053 * 9 7 2 23 23 H 1.09001 * 109.47328 * 300.00241 * 9 7 2 24 24 H 1.09003 * 109.46810 * 59.99844 * 10 9 7 25 25 H 1.09001 * 109.47213 * 300.00414 * 10 9 7 26 26 H 1.09003 * 113.77049 * 90.34034 * 14 13 11 27 27 H 1.08993 * 113.77081 * 318.93795 * 14 13 11 28 28 H 1.09002 * 113.74276 * 90.74001 * 15 14 13 29 29 H 1.09000 * 109.47306 * 179.97438 * 17 16 15 30 30 H 1.09006 * 113.87423 * 41.10256 * 20 13 11 31 31 H 1.08997 * 113.77410 * 269.60428 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4919 -4.9672 0.0033 12 8 0.2790 -4.9672 0.0041 13 7 2.1657 -6.1344 0.0039 14 6 1.7712 -7.5565 0.0051 15 6 3.1446 -7.8288 0.6452 16 8 3.8069 -8.9800 0.1179 17 6 4.6956 -9.6129 1.0409 18 9 5.6884 -8.7068 1.4285 19 9 3.9785 -10.0292 2.1678 20 6 3.5979 -6.5048 0.0037 21 1 -0.4851 0.8400 -0.0004 22 1 0.6240 -2.5575 -0.8880 23 1 0.6247 -2.5563 0.8919 24 1 2.8727 -3.6039 0.8910 25 1 2.8713 -3.6047 -0.8890 26 1 1.6591 -7.9822 -0.9921 27 1 0.9292 -7.7782 0.6607 28 1 3.1329 -7.8071 1.7349 29 1 5.1581 -10.4777 0.5651 30 1 4.2133 -5.8875 0.6583 31 1 4.0212 -6.6222 -0.9938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360585121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:54 Heat of formation + Delta-G solvation = -163.872129 kcal Electronic energy + Delta-G solvation = -17851.274607 eV Core-core repulsion = 14383.395945 eV Total energy + Delta-G solvation = -3467.878662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.41396 -47.52560 -40.28272 -38.18289 -36.36602 -33.47080 -31.14334 -29.16710 -26.53711 -26.05621 -25.11952 -22.35191 -20.91966 -19.06694 -18.56041 -18.08641 -18.02059 -16.97033 -15.98882 -15.88212 -15.32699 -14.61973 -14.46687 -14.37445 -13.91788 -13.78300 -13.68316 -13.52383 -12.87785 -12.49879 -12.36461 -12.17512 -12.09623 -11.75651 -11.14430 -10.95026 -10.60952 -10.56979 -9.98292 -9.68846 -9.22974 -9.05037 -8.61526 -8.32936 -5.96823 -4.01385 2.45742 2.94127 3.15545 3.32533 3.39388 3.40551 3.43166 3.94651 4.12785 4.44451 4.47065 4.51519 4.74471 5.08044 5.28847 5.35982 5.38250 5.42792 5.50854 5.99438 6.18644 6.25282 6.26931 6.86228 7.73435 7.83829 7.86274 8.05646 8.36529 8.65215 9.06852 9.62291 11.14237 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.041823 B = 0.003953 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.328910 B = 7081.364195 C = 7548.216381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.122 4.122 11 C 0.539 3.461 12 O -0.527 6.527 13 N -0.654 5.654 14 C 0.112 3.888 15 C 0.037 3.963 16 O -0.370 6.370 17 C 0.404 3.596 18 F -0.206 7.206 19 F -0.208 7.208 20 C 0.094 3.906 21 H 0.261 0.739 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.168 0.832 30 H 0.091 0.909 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 -20.879 1.177 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.162 4.162 11 C 0.331 3.669 12 O -0.401 6.401 13 N -0.395 5.395 14 C -0.011 4.011 15 C -0.020 4.020 16 O -0.291 6.291 17 C 0.313 3.687 18 F -0.188 7.188 19 F -0.190 7.190 20 C -0.030 4.030 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.185 0.815 30 H 0.109 0.891 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.580 -20.587 1.032 23.169 hybrid contribution 0.589 0.957 0.292 1.161 sum 11.169 -19.630 1.324 22.624 Atomic orbital electron populations 1.70004 1.06075 1.26523 1.50214 1.25028 0.94826 0.99261 0.95257 0.86522 0.80000 0.83764 0.77600 1.19731 1.20989 1.20996 1.21239 0.92975 0.90909 1.51382 0.92511 1.18940 0.93193 0.89355 0.98712 1.21849 1.00697 0.91069 1.02558 1.21377 0.87958 0.83747 0.73799 1.90693 1.14194 1.86488 1.48768 1.50017 1.08076 1.04979 1.76403 1.23181 0.95377 0.81070 1.01437 1.24585 0.93983 0.83896 0.99560 1.88462 1.58057 1.43651 1.38885 1.23185 0.78580 0.88725 0.78259 1.93096 1.62641 1.71017 1.92066 1.93080 1.79489 1.90333 1.56121 1.23659 0.84751 0.92725 1.01834 0.92969 0.95753 0.95734 0.90205 0.90157 0.89030 0.89305 0.87114 0.81530 0.89063 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.12 -2.56 5.39 -27.88 -0.15 -2.71 16 11 C 0.54 10.95 8.06 -10.99 -0.09 10.86 16 12 O -0.53 -12.97 16.71 5.55 0.09 -12.87 16 13 N -0.65 -9.97 3.62 -178.32 -0.64 -10.61 16 14 C 0.11 1.35 8.67 -2.97 -0.03 1.32 16 15 C 0.04 0.37 3.99 -25.80 -0.10 0.27 16 16 O -0.37 -3.16 10.66 -35.23 -0.38 -3.53 16 17 C 0.40 2.63 6.24 101.05 0.63 3.26 16 18 F -0.21 -1.72 17.15 2.25 0.04 -1.69 16 19 F -0.21 -1.75 16.80 2.25 0.04 -1.71 16 20 C 0.09 1.04 8.47 -2.77 -0.02 1.01 16 21 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 22 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 23 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 24 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 25 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.11 1.08 7.46 -51.93 -0.39 0.70 16 29 H 0.17 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -35.16 285.43 -4.85 -40.01 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -3.73 Total: -4.84 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.29 Total: 1.07 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.09 Total: -37.47 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.28 Total: -16.41 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -35.16 -4.85 -40.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360585121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.863 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds