Wall clock time and date at job start Mon Mar 30 2020 18:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38009 * 120.01434 * 2 1 4 4 C 1.38236 * 120.20551 * 180.27262 * 3 2 1 5 5 C 1.38851 * 120.24014 * 359.45244 * 4 3 2 6 6 O 1.35909 * 119.98565 * 180.27062 * 5 4 3 7 7 C 1.38459 * 120.03004 * 0.25067 * 5 4 3 8 8 C 1.39526 * 119.79274 * 0.02562 * 7 5 4 9 9 C 1.47859 * 120.11776 * 180.02562 * 8 7 5 10 10 O 1.21549 * 120.00051 * 173.73991 * 9 8 7 11 11 N 1.34773 * 119.99882 * 353.73657 * 9 8 7 12 12 C 1.46499 * 120.00077 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47199 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47327 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99797 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00371 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99903 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47019 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47412 * 120.00291 * 18 16 14 21 21 H 1.48501 * 109.47312 * 240.00540 * 18 16 14 22 22 H 1.08995 * 109.47238 * 263.68251 * 1 2 3 23 23 H 1.08992 * 109.47333 * 23.69456 * 1 2 3 24 24 H 1.09002 * 109.46506 * 143.69299 * 1 2 3 25 25 H 1.07999 * 119.89432 * 0.02562 * 3 2 1 26 26 H 1.08005 * 119.87938 * 179.72520 * 4 3 2 27 27 H 0.96704 * 113.99798 * 89.99973 * 6 5 4 28 28 H 1.07993 * 120.10054 * 180.02562 * 7 5 4 29 29 H 0.97000 * 120.00184 * 0.02562 * 11 9 8 30 30 H 1.08999 * 109.47190 * 300.00101 * 12 11 9 31 31 H 1.09001 * 109.47270 * 59.99903 * 12 11 9 32 32 H 1.08997 * 109.47362 * 299.99643 * 13 12 11 33 33 H 1.08996 * 109.47404 * 60.00174 * 13 12 11 34 34 H 0.97008 * 120.00035 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1950 0.0000 4 6 3.5797 1.1996 -0.0057 5 6 4.2831 0.0024 0.0000 6 8 5.6421 0.0131 0.0000 7 6 3.6005 -1.2022 0.0062 8 6 2.2052 -1.2084 0.0062 9 6 1.4690 -2.4907 0.0133 10 8 0.2590 -2.4961 0.1280 11 7 2.1397 -3.6534 -0.1074 12 6 1.4103 -4.9239 -0.1009 13 6 2.3999 -6.0810 -0.2509 14 6 1.6496 -7.3879 -0.2436 15 1 0.5743 -7.3927 -0.1425 16 6 2.3357 -8.5774 -0.3670 17 7 3.6450 -8.5716 -0.4906 18 14 1.4055 -10.1974 -0.3586 19 1 -0.0480 -9.9328 -0.2087 20 1 1.6485 -10.9144 -1.6361 21 1 1.8765 -11.0328 0.7752 22 1 -0.3633 -0.1131 1.0214 23 1 -0.3633 0.9409 -0.4129 24 1 -0.3632 -0.8282 -0.6085 25 1 1.6559 2.1295 0.0004 26 1 4.1147 2.1379 -0.0101 27 1 6.0354 0.0204 0.8834 28 1 4.1464 -2.1340 0.0111 29 1 3.1054 -3.6491 -0.1987 30 1 0.8702 -5.0279 0.8401 31 1 0.7026 -4.9408 -0.9298 32 1 2.9403 -5.9772 -1.1918 33 1 3.1072 -6.0639 0.5782 34 1 4.1277 -9.4085 -0.5778 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390243825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:00 Heat of formation + Delta-G solvation = -67.287523 kcal Electronic energy + Delta-G solvation = -17272.107905 eV Core-core repulsion = 14362.646996 eV Total energy + Delta-G solvation = -2909.460910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.40637 -38.78854 -36.82025 -34.99817 -33.02994 -31.69412 -31.51858 -29.40139 -26.56220 -24.97976 -23.63265 -21.87996 -20.89797 -20.39177 -18.55420 -16.89566 -16.34016 -16.04442 -15.70467 -15.12412 -15.03216 -14.72626 -14.44541 -13.91292 -13.57968 -13.23809 -12.83092 -12.57669 -12.28764 -11.93028 -11.82702 -11.59759 -11.20591 -11.06273 -10.89858 -10.63360 -10.36386 -9.74004 -9.42919 -9.19935 -9.14561 -8.68610 -8.51137 -8.34630 -6.10734 -4.13695 0.75142 1.08060 2.93101 3.27716 3.35222 3.39821 3.58899 3.70779 4.03925 4.40784 4.63346 4.72127 4.86325 5.11280 5.23597 5.26539 5.48891 5.60894 5.73279 5.85275 5.99569 6.15579 6.18811 6.31506 6.31788 6.47638 6.62951 6.71462 6.88181 7.45025 7.49624 7.59081 7.87158 7.94938 8.25482 8.56913 8.92409 9.51382 11.00938 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032719 B = 0.004312 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.571623 B = 6491.867110 C = 7314.856980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.034 4.034 3 C -0.117 4.117 4 C -0.121 4.121 5 C 0.088 3.912 6 O -0.497 6.497 7 C -0.108 4.108 8 C -0.116 4.116 9 C 0.547 3.453 10 O -0.539 6.539 11 N -0.716 5.716 12 C 0.121 3.879 13 C 0.011 3.989 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.098 0.902 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.390 0.610 28 H 0.136 0.864 29 H 0.397 0.603 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 19.237 2.327 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.035 4.035 3 C -0.136 4.136 4 C -0.140 4.140 5 C 0.044 3.956 6 O -0.307 6.307 7 C -0.127 4.127 8 C -0.120 4.120 9 C 0.334 3.666 10 O -0.418 6.418 11 N -0.365 5.365 12 C 0.000 4.000 13 C -0.026 4.026 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.245 0.755 28 H 0.153 0.847 29 H 0.231 0.769 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.458 19.053 1.775 19.141 hybrid contribution 0.416 -0.944 0.455 1.128 sum 0.873 18.109 2.230 18.267 Atomic orbital electron populations 1.21081 0.89775 1.02987 1.03782 1.20113 0.97196 0.91342 0.94827 1.20923 0.93446 0.97687 1.01494 1.21556 0.94531 0.97896 0.99982 1.18277 0.83057 0.91983 1.02302 1.84860 1.15771 1.96437 1.33612 1.21670 0.93460 0.98552 0.98997 1.19871 0.92880 0.94024 1.05199 1.18199 0.87217 0.83708 0.77485 1.90693 1.13582 1.87183 1.50384 1.46314 1.11161 1.06676 1.72368 1.21770 0.96125 0.81164 1.00988 1.19341 0.94265 0.91222 0.97809 1.21079 0.93799 0.90459 1.50656 0.92152 1.24996 0.94889 0.99432 0.94960 1.69964 1.06509 1.26996 1.49803 0.86456 0.80145 0.83324 0.77636 1.19564 1.20921 1.20925 0.90659 0.92629 0.88345 0.85042 0.85156 0.75451 0.84662 0.76853 0.92315 0.92317 0.95884 0.95918 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.72 36.01 0.31 -1.18 16 2 C -0.03 -0.43 5.91 -104.21 -0.62 -1.05 16 3 C -0.12 -1.21 9.65 -39.67 -0.38 -1.59 16 4 C -0.12 -1.21 9.98 -39.36 -0.39 -1.60 16 5 C 0.09 0.99 6.70 -39.27 -0.26 0.73 16 6 O -0.50 -4.95 13.50 -19.45 -0.26 -5.21 16 7 C -0.11 -1.36 9.46 -39.02 -0.37 -1.73 16 8 C -0.12 -1.68 5.87 -104.99 -0.62 -2.30 16 9 C 0.55 9.59 7.70 -12.32 -0.09 9.49 16 10 O -0.54 -10.71 13.34 5.32 0.07 -10.63 16 11 N -0.72 -12.79 5.50 -61.25 -0.34 -13.13 16 12 C 0.12 2.58 5.61 -4.05 -0.02 2.56 16 13 C 0.01 0.27 5.09 -27.89 -0.14 0.13 16 14 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 15 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.54 8.04 -51.93 -0.42 0.12 16 24 H 0.10 1.48 5.85 -51.93 -0.30 1.17 16 25 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 26 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 27 H 0.39 1.99 9.06 45.56 0.41 2.40 16 28 H 0.14 1.60 6.45 -52.49 -0.34 1.26 16 29 H 0.40 6.28 6.54 -40.82 -0.27 6.01 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 294.58 15.07 4.44 4.44 Total: -1.00 -32.21 294.58 -6.79 -39.00 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.41 Total: 4.32 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.00 Total: -9.72 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.40 Total: -38.49 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.19 Total: -15.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.21 -6.79 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390243825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.288 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds