Wall clock time and date at job start Mon Mar 30 2020 18:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40363 * 126.64519 * 2 1 4 4 C 1.35135 * 107.11434 * 180.25767 * 3 2 1 5 5 O 1.33928 * 108.76579 * 359.97438 * 4 3 2 6 6 C 1.34916 * 109.38418 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.98347 * 179.97438 * 6 5 4 8 8 O 1.21698 * 119.99782 * 174.00322 * 7 6 5 9 9 N 1.34778 * 120.00268 * 353.99882 * 7 6 5 10 10 C 1.46500 * 120.00100 * 184.38930 * 9 7 6 11 11 C 1.52998 * 109.47200 * 185.18977 * 10 9 7 12 12 C 1.50701 * 115.54759 * 57.89680 * 11 10 9 13 13 H 1.08000 * 119.99652 * 264.66362 * 12 11 10 14 14 C 1.37876 * 120.00176 * 84.67014 * 12 11 10 15 15 N 1.31512 * 120.00081 * 1.97184 * 14 12 11 16 16 Si 1.86801 * 120.00157 * 181.97719 * 14 12 11 17 17 H 1.48502 * 109.46963 * 59.99606 * 16 14 12 18 18 H 1.48493 * 109.47183 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46977 * 299.99754 * 16 14 12 20 20 C 1.52998 * 117.49857 * 272.22314 * 11 10 9 21 21 C 1.52996 * 117.49832 * 203.56722 * 11 10 9 22 22 H 1.08994 * 109.47068 * 269.69467 * 1 2 3 23 23 H 1.09005 * 109.46690 * 29.69540 * 1 2 3 24 24 H 1.09001 * 109.47053 * 149.68895 * 1 2 3 25 25 H 1.08003 * 126.44040 * 0.25642 * 3 2 1 26 26 H 1.07998 * 125.61294 * 179.97438 * 4 3 2 27 27 H 0.97001 * 119.99943 * 4.39265 * 9 7 6 28 28 H 1.09002 * 109.47300 * 305.19328 * 10 9 7 29 29 H 1.09008 * 109.47165 * 65.18739 * 10 9 7 30 30 H 0.96998 * 120.00336 * 185.01962 * 15 14 12 31 31 H 1.09005 * 117.49627 * 0.02562 * 20 11 10 32 32 H 1.08996 * 117.49813 * 145.01623 * 20 11 10 33 33 H 1.09005 * 117.49728 * 214.97950 * 21 11 10 34 34 H 1.08998 * 117.50147 * 359.97287 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0058 5 8 3.6005 -0.6647 -0.0088 6 6 2.3220 -1.0955 -0.0055 7 6 1.8843 -2.4952 -0.0078 8 8 0.7027 -2.7634 0.1057 9 7 2.7906 -3.4846 -0.1356 10 6 2.3460 -4.8770 -0.2345 11 6 3.5646 -5.8022 -0.2404 12 6 4.4728 -5.6884 0.9568 13 1 5.3455 -5.0536 0.9141 14 6 4.1896 -6.3948 2.1065 15 7 3.1488 -7.1977 2.1455 16 14 5.2843 -6.2112 3.6090 17 1 5.2857 -4.7932 4.0502 18 1 4.7684 -7.0697 4.7052 19 1 6.6689 -6.6242 3.2661 20 6 4.2124 -6.1085 -1.5921 21 6 3.3979 -7.1858 -0.8718 22 1 -0.3633 -0.0055 1.0276 23 1 -0.3633 0.8928 -0.5091 24 1 -0.3633 -0.8872 -0.5187 25 1 2.0306 2.1595 0.0039 26 1 4.5046 1.2917 -0.0077 27 1 3.7373 -3.2746 -0.1620 28 1 1.7114 -5.1173 0.6185 29 1 1.7816 -5.0135 -1.1571 30 1 2.9070 -7.6384 2.9751 31 1 3.7708 -5.6505 -2.4772 32 1 5.2956 -6.2281 -1.6155 33 1 3.9455 -8.0138 -0.4215 34 1 2.4201 -7.4371 -1.2826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404157790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:11 Heat of formation + Delta-G solvation = -6.251952 kcal Electronic energy + Delta-G solvation = -17936.757094 eV Core-core repulsion = 15029.942886 eV Total energy + Delta-G solvation = -2906.814209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.54183 -38.86352 -36.70558 -34.18831 -33.16924 -31.97578 -30.34213 -27.83370 -26.11887 -25.17258 -22.43739 -21.22622 -20.91554 -19.69046 -19.19659 -17.74555 -16.25658 -16.19162 -15.74410 -15.00057 -14.68832 -14.29777 -14.05038 -13.50272 -13.05121 -12.99329 -12.86933 -12.65500 -12.40249 -11.89242 -11.64738 -11.58658 -10.96898 -10.94055 -10.55709 -10.26299 -9.78623 -9.62269 -9.45636 -9.07960 -8.60900 -8.47329 -8.29039 -8.04567 -6.08662 -4.17901 1.30168 2.43976 2.93218 3.27673 3.33318 3.34969 3.61909 3.83848 4.35982 4.81419 4.87121 5.14805 5.21333 5.36558 5.51332 5.63097 5.83691 5.88714 6.01383 6.12236 6.23682 6.30271 6.44982 6.48237 6.52992 6.68974 6.81241 6.99410 7.09411 7.21108 7.37157 7.50567 7.80367 8.20486 8.31798 8.70569 8.83363 9.49675 10.99517 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.006406 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.178683 B = 4369.544618 C = 4788.330835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.104 4.104 3 C -0.226 4.226 4 C -0.015 4.015 5 O -0.160 6.160 6 C -0.067 4.067 7 C 0.589 3.411 8 O -0.534 6.534 9 N -0.686 5.686 10 C 0.162 3.838 11 C 0.023 3.977 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.212 4.212 21 C -0.142 4.142 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.152 0.848 26 H 0.206 0.794 27 H 0.406 0.594 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 13.155 -4.702 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.245 4.245 4 C -0.085 4.085 5 O -0.054 6.054 6 C -0.119 4.119 7 C 0.373 3.627 8 O -0.414 6.414 9 N -0.334 5.334 10 C 0.039 3.961 11 C 0.022 3.978 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.511 5.511 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.249 4.249 21 C -0.180 4.180 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.170 0.830 26 H 0.223 0.777 27 H 0.241 0.759 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.912 12.500 -4.532 13.328 hybrid contribution 1.034 0.430 0.952 1.470 sum 0.123 12.930 -3.580 13.417 Atomic orbital electron populations 1.20348 0.88427 1.03046 1.02748 1.20585 0.97590 0.91018 1.01516 1.21673 0.92529 0.99881 1.10429 1.24277 0.99767 0.80949 1.03547 1.84111 1.28616 1.22411 1.70308 1.22253 0.81160 0.95399 1.13083 1.16593 0.86054 0.81760 0.78244 1.90806 1.16355 1.82211 1.52050 1.45892 1.09905 1.07161 1.70418 1.21065 0.97098 0.78145 0.99813 1.19031 0.94120 0.93727 0.90905 1.20303 1.09418 1.27527 0.96496 0.92237 1.24971 0.95382 0.93976 0.98638 1.69972 1.26272 1.28159 1.26672 0.86705 0.80897 0.78171 0.82535 1.20202 1.21220 1.20165 1.23056 0.98532 1.06916 0.96395 1.22467 0.98665 0.93979 1.02918 0.91007 0.91966 0.89683 0.83046 0.77704 0.75923 0.90624 0.94211 0.92777 0.91625 0.90321 0.89539 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.75 36.01 0.35 -0.86 16 2 C -0.10 -1.57 6.20 -104.43 -0.65 -2.22 16 3 C -0.23 -2.70 10.83 -39.89 -0.43 -3.13 16 4 C -0.02 -0.18 12.08 29.63 0.36 0.18 16 5 O -0.16 -2.46 10.41 5.00 0.05 -2.41 16 6 C -0.07 -1.15 7.13 -36.80 -0.26 -1.42 16 7 C 0.59 11.89 7.78 -12.86 -0.10 11.79 16 8 O -0.53 -11.91 14.80 5.19 0.08 -11.83 16 9 N -0.69 -14.13 5.37 -61.62 -0.33 -14.46 16 10 C 0.16 3.67 5.56 -4.04 -0.02 3.65 16 11 C 0.02 0.54 1.51 -155.66 -0.23 0.31 16 12 C -0.50 -12.98 8.38 -34.44 -0.29 -13.27 16 13 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 14 C 0.07 1.99 5.43 -17.82 -0.10 1.90 16 15 N -0.87 -24.38 12.72 55.43 0.71 -23.68 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.21 -4.42 9.94 -26.70 -0.27 -4.68 16 21 C -0.14 -3.24 9.26 -26.70 -0.25 -3.49 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 1.31 6.60 -51.93 -0.34 0.97 16 25 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 26 H 0.21 1.40 8.06 -52.49 -0.42 0.97 16 27 H 0.41 7.94 8.01 -40.82 -0.33 7.62 16 28 H 0.08 1.95 8.10 -51.93 -0.42 1.53 16 29 H 0.04 0.86 8.11 -51.92 -0.42 0.44 16 30 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -29.61 299.92 -6.33 -35.93 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.44 Total: 7.36 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.89 Total: -11.24 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.37 Total: -38.14 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.13 Total: -14.24 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.61 -6.33 -35.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404157790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.680 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds