Wall clock time and date at job start Mon Mar 30 2020 18:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40363 * 126.64519 * 2 1 4 4 C 1.35135 * 107.11434 * 180.25767 * 3 2 1 5 5 O 1.33928 * 108.76579 * 359.97438 * 4 3 2 6 6 C 1.34916 * 109.38418 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.98347 * 179.97438 * 6 5 4 8 8 O 1.21698 * 119.99782 * 174.00322 * 7 6 5 9 9 N 1.34778 * 120.00268 * 353.99882 * 7 6 5 10 10 C 1.46500 * 120.00100 * 184.38930 * 9 7 6 11 11 C 1.52998 * 109.47200 * 185.18977 * 10 9 7 12 12 C 1.50701 * 115.54759 * 57.89680 * 11 10 9 13 13 H 1.08000 * 119.99652 * 264.66362 * 12 11 10 14 14 C 1.37876 * 120.00176 * 84.67014 * 12 11 10 15 15 N 1.31512 * 120.00081 * 1.97184 * 14 12 11 16 16 Si 1.86801 * 120.00157 * 181.97719 * 14 12 11 17 17 H 1.48502 * 109.46963 * 59.99606 * 16 14 12 18 18 H 1.48493 * 109.47183 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46977 * 299.99754 * 16 14 12 20 20 C 1.52998 * 117.49857 * 272.22314 * 11 10 9 21 21 C 1.52996 * 117.49832 * 203.56722 * 11 10 9 22 22 H 1.08994 * 109.47068 * 269.69467 * 1 2 3 23 23 H 1.09005 * 109.46690 * 29.69540 * 1 2 3 24 24 H 1.09001 * 109.47053 * 149.68895 * 1 2 3 25 25 H 1.08003 * 126.44040 * 0.25642 * 3 2 1 26 26 H 1.07998 * 125.61294 * 179.97438 * 4 3 2 27 27 H 0.97001 * 119.99943 * 4.39265 * 9 7 6 28 28 H 1.09002 * 109.47300 * 305.19328 * 10 9 7 29 29 H 1.09008 * 109.47165 * 65.18739 * 10 9 7 30 30 H 0.96998 * 120.00336 * 185.01962 * 15 14 12 31 31 H 1.09005 * 117.49627 * 0.02562 * 20 11 10 32 32 H 1.08996 * 117.49813 * 145.01623 * 20 11 10 33 33 H 1.09005 * 117.49728 * 214.97950 * 21 11 10 34 34 H 1.08998 * 117.50147 * 359.97287 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0058 5 8 3.6005 -0.6647 -0.0088 6 6 2.3220 -1.0955 -0.0055 7 6 1.8843 -2.4952 -0.0078 8 8 0.7027 -2.7634 0.1057 9 7 2.7906 -3.4846 -0.1356 10 6 2.3460 -4.8770 -0.2345 11 6 3.5646 -5.8022 -0.2404 12 6 4.4728 -5.6884 0.9568 13 1 5.3455 -5.0536 0.9141 14 6 4.1896 -6.3948 2.1065 15 7 3.1488 -7.1977 2.1455 16 14 5.2843 -6.2112 3.6090 17 1 5.2857 -4.7932 4.0502 18 1 4.7684 -7.0697 4.7052 19 1 6.6689 -6.6242 3.2661 20 6 4.2124 -6.1085 -1.5921 21 6 3.3979 -7.1858 -0.8718 22 1 -0.3633 -0.0055 1.0276 23 1 -0.3633 0.8928 -0.5091 24 1 -0.3633 -0.8872 -0.5187 25 1 2.0306 2.1595 0.0039 26 1 4.5046 1.2917 -0.0077 27 1 3.7373 -3.2746 -0.1620 28 1 1.7114 -5.1173 0.6185 29 1 1.7816 -5.0135 -1.1571 30 1 2.9070 -7.6384 2.9751 31 1 3.7708 -5.6505 -2.4772 32 1 5.2956 -6.2281 -1.6155 33 1 3.9455 -8.0138 -0.4215 34 1 2.4201 -7.4371 -1.2826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404157790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:10 Heat of formation + Delta-G solvation = -24.915571 kcal Electronic energy + Delta-G solvation = -17937.566410 eV Core-core repulsion = 15029.942886 eV Total energy + Delta-G solvation = -2907.623524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.62880 -40.46393 -38.49305 -35.46421 -34.67465 -33.98676 -31.43211 -29.14695 -27.83908 -26.97906 -23.69211 -22.92788 -22.09893 -21.40434 -20.69308 -19.13400 -18.04497 -17.39146 -16.96936 -16.75379 -16.51829 -15.91540 -15.63565 -14.91921 -14.60281 -14.31340 -14.05637 -13.82779 -13.73499 -13.51353 -13.44529 -12.93659 -12.82088 -12.72974 -12.41896 -12.03704 -11.49737 -11.18221 -10.98656 -10.63593 -10.44014 -10.18455 -9.94150 -9.49007 -8.12314 -6.25624 0.09396 1.41063 1.42092 1.45841 1.48660 1.79298 2.15894 2.37492 2.43427 3.16491 3.48151 3.81036 3.88239 4.00257 4.22826 4.50990 4.57414 4.63165 4.65636 4.67525 4.77432 4.80451 4.96030 5.00803 5.13095 5.24700 5.27278 5.43366 5.51281 5.57947 5.67064 5.74799 5.95992 6.34013 6.63717 6.81520 7.14433 7.44144 8.95411 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.006406 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.178683 B = 4369.544618 C = 4788.330835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.098 4.098 3 C -0.230 4.230 4 C 0.008 3.992 5 O -0.175 6.175 6 C -0.116 4.116 7 C 0.586 3.414 8 O -0.568 6.568 9 N -0.688 5.688 10 C 0.177 3.823 11 C -0.002 4.002 12 C -0.505 4.505 13 H 0.060 0.940 14 C 0.025 3.975 15 N -0.906 5.906 16 Si 0.947 3.053 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.267 1.267 20 C -0.179 4.179 21 C -0.150 4.150 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.189 0.811 26 H 0.257 0.743 27 H 0.410 0.590 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.259 0.741 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 15.935 -5.241 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.249 4.249 4 C -0.061 4.061 5 O -0.071 6.071 6 C -0.167 4.167 7 C 0.374 3.626 8 O -0.450 6.450 9 N -0.336 5.336 10 C 0.054 3.946 11 C -0.003 4.003 12 C -0.543 4.543 13 H 0.079 0.921 14 C -0.175 4.175 15 N -0.544 5.544 16 Si 0.773 3.227 17 H -0.200 1.200 18 H -0.215 1.215 19 H -0.192 1.192 20 C -0.216 4.216 21 C -0.189 4.189 22 H 0.091 0.909 23 H 0.114 0.886 24 H 0.078 0.922 25 H 0.206 0.794 26 H 0.273 0.727 27 H 0.246 0.754 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.478 15.293 -5.082 16.122 hybrid contribution 0.628 -0.289 1.084 1.285 sum 1.106 15.004 -3.998 15.567 Atomic orbital electron populations 1.20390 0.87926 1.03459 1.02909 1.21031 0.98315 0.91632 0.99109 1.22082 0.91952 1.00609 1.10261 1.25399 1.01646 0.79552 0.99486 1.84087 1.27620 1.24536 1.70881 1.21685 0.82667 0.94161 1.18216 1.16982 0.85536 0.83053 0.77057 1.90770 1.17559 1.83251 1.53454 1.45784 1.10239 1.06438 1.71099 1.20679 0.96234 0.79429 0.98295 1.19082 0.94751 0.94478 0.91992 1.20612 1.09509 1.26753 0.97378 0.92146 1.25681 0.96532 0.94018 1.01299 1.70093 1.27928 1.29354 1.27008 0.85793 0.79604 0.77907 0.79431 1.20029 1.21477 1.19223 1.23046 0.98689 1.04267 0.95602 1.22390 0.99426 0.93318 1.03729 0.90860 0.88604 0.92203 0.79410 0.72749 0.75403 0.94758 0.93461 0.93180 0.89099 0.89712 0.91708 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.35 9.75 71.24 0.69 -1.65 16 2 C -0.10 -2.78 6.20 -19.74 -0.12 -2.90 16 3 C -0.23 -4.57 10.83 22.07 0.24 -4.33 16 4 C 0.01 0.16 12.08 67.10 0.81 0.97 16 5 O -0.18 -5.08 10.41 -5.04 -0.05 -5.13 16 6 C -0.12 -3.96 7.13 24.07 0.17 -3.79 16 7 C 0.59 24.36 7.78 86.44 0.67 25.03 16 8 O -0.57 -26.46 14.80 -4.34 -0.06 -26.53 16 9 N -0.69 -28.96 5.37 -467.09 -2.51 -31.47 16 10 C 0.18 8.30 5.56 86.38 0.48 8.78 16 11 C 0.00 -0.11 1.51 -52.93 -0.08 -0.19 16 12 C -0.50 -26.41 8.38 25.60 0.21 -26.19 16 13 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 14 C 0.03 1.38 5.43 84.65 0.46 1.84 16 15 N -0.91 -51.96 12.72 21.45 0.27 -51.69 16 16 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 C -0.18 -7.23 9.94 30.61 0.30 -6.93 16 21 C -0.15 -6.91 9.26 30.61 0.28 -6.63 16 22 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.06 1.87 6.60 -2.39 -0.02 1.85 16 25 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 26 H 0.26 1.92 8.06 -2.91 -0.02 1.89 16 27 H 0.41 16.22 8.01 -92.71 -0.74 15.47 16 28 H 0.03 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.05 2.09 8.11 -2.38 -0.02 2.07 16 30 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 31 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 32 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.06 3.23 8.14 -2.38 -0.02 3.21 16 34 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -66.34 299.92 4.17 -62.17 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.37 Total: 23.52 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.13 Total: -16.00 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -2.24 Total: -83.16 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.12 Total: -31.66 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -66.34 4.17 -62.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404157790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.255 kcal (2) G-P(sol) polarization free energy of solvation -66.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds