Wall clock time and date at job start Mon Mar 30 2020 18:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33651 * 125.80132 * 2 1 4 4 C 1.34227 * 110.90581 * 180.02562 * 3 2 1 5 5 C 1.34181 * 109.12202 * 359.71279 * 4 3 2 6 6 C 1.36422 * 125.80145 * 180.02562 * 2 1 3 7 7 C 1.47379 * 127.18888 * 359.97438 * 6 2 1 8 8 O 1.21610 * 120.00134 * 0.02562 * 7 6 2 9 9 N 1.34775 * 119.99778 * 180.02562 * 7 6 2 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37872 * 119.99859 * 275.21340 * 12 11 10 15 15 N 1.31511 * 120.00409 * 7.12832 * 14 12 11 16 16 Si 1.86803 * 119.99995 * 187.13443 * 14 12 11 17 17 H 1.48496 * 109.47350 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.46931 * 299.99594 * 16 14 12 19 19 H 1.48495 * 109.47205 * 59.99500 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 H 1.08997 * 109.47031 * 269.99721 * 1 2 3 23 23 H 1.08998 * 109.47161 * 29.99362 * 1 2 3 24 24 H 1.08999 * 109.47624 * 149.99234 * 1 2 3 25 25 H 1.07998 * 125.43354 * 180.02562 * 4 3 2 26 26 H 1.07997 * 127.01707 * 180.27597 * 5 4 3 27 27 H 0.97003 * 119.99966 * 359.97438 * 9 7 6 28 28 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 29 29 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 30 30 H 0.97004 * 119.99607 * 355.40573 * 15 14 12 31 31 H 1.08991 * 117.49912 * 215.00345 * 20 11 10 32 32 H 1.09001 * 117.49471 * 0.02562 * 20 11 10 33 33 H 1.09005 * 117.50031 * 359.97438 * 21 11 10 34 34 H 1.09005 * 117.49813 * 144.97487 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5860 0.7389 -0.0006 5 6 3.6849 -0.5992 0.0054 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5158 -0.0006 8 8 0.6889 -2.7892 -0.0007 9 7 2.7929 -3.5016 -0.0006 10 6 2.3644 -4.9025 -0.0013 11 6 3.5900 -5.8108 0.1163 12 6 4.5827 -5.7124 -1.0132 13 1 5.4413 -5.0636 -0.9226 14 6 4.3948 -6.4507 -2.1624 15 7 3.2823 -7.1312 -2.3323 16 14 5.7205 -6.4846 -3.4780 17 1 5.2781 -7.3451 -4.6045 18 1 5.9619 -5.1056 -3.9731 19 1 6.9756 -7.0305 -2.9020 20 6 4.1401 -6.0770 1.5190 21 6 3.3936 -7.1816 0.7669 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5139 25 1 4.4172 1.4284 -0.0003 26 1 4.5927 -1.1841 0.0107 27 1 3.7381 -3.2835 -0.0009 28 1 1.8380 -5.1210 -0.9304 29 1 1.6988 -5.0792 0.8436 30 1 2.6229 -7.1679 -1.6218 31 1 5.2199 -6.1809 1.6248 32 1 3.6285 -5.6054 2.3581 33 1 2.3913 -7.4362 1.1115 34 1 3.9821 -8.0124 0.3775 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404184525.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:12 Heat of formation + Delta-G solvation = -12.822682 kcal Electronic energy + Delta-G solvation = -17902.878612 eV Core-core repulsion = 14995.779475 eV Total energy + Delta-G solvation = -2907.099137 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.46114 -38.89484 -36.95130 -33.50851 -32.78476 -31.94136 -31.71166 -27.39427 -25.98602 -24.86338 -22.76846 -21.39627 -20.78304 -19.77983 -19.20158 -17.70490 -16.63055 -16.25366 -15.49729 -15.25691 -14.52002 -14.29753 -13.78714 -13.66550 -13.21382 -12.98272 -12.87302 -12.78497 -12.62447 -12.34280 -11.75843 -11.65118 -10.96135 -10.83214 -10.51125 -10.16192 -9.76982 -9.70153 -9.46465 -8.72582 -8.54718 -8.50725 -8.41462 -8.15203 -6.41842 -4.17986 1.53552 2.16381 2.87407 3.38960 3.39869 3.58860 3.77792 3.86599 4.45471 4.59019 4.96969 4.99835 5.15212 5.27060 5.36760 5.54107 5.61844 5.75341 5.83426 5.93731 6.12832 6.21443 6.22393 6.36426 6.38454 6.51818 6.65474 6.83510 7.08480 7.13242 7.17160 7.25777 8.14423 8.24102 8.31645 8.79170 8.81480 9.58414 10.97566 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.006115 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.977741 B = 4577.603677 C = 5019.651171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.065 3.935 3 O -0.181 6.181 4 C -0.047 4.047 5 C -0.183 4.183 6 C -0.235 4.235 7 C 0.578 3.422 8 O -0.560 6.560 9 N -0.691 5.691 10 C 0.159 3.841 11 C 0.004 3.996 12 C -0.578 4.578 13 H 0.053 0.947 14 C 0.030 3.970 15 N -0.899 5.899 16 Si 1.066 2.934 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.194 4.194 21 C -0.172 4.172 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.206 0.794 26 H 0.158 0.842 27 H 0.403 0.597 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.276 0.724 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 12.931 5.011 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.013 3.987 3 O -0.077 6.077 4 C -0.113 4.113 5 C -0.203 4.203 6 C -0.239 4.239 7 C 0.365 3.635 8 O -0.442 6.442 9 N -0.339 5.339 10 C 0.036 3.964 11 C 0.003 3.997 12 C -0.615 4.615 13 H 0.071 0.929 14 C -0.177 4.177 15 N -0.533 5.533 16 Si 0.894 3.106 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.231 4.231 21 C -0.210 4.210 22 H 0.103 0.897 23 H 0.092 0.908 24 H 0.128 0.872 25 H 0.223 0.777 26 H 0.176 0.824 27 H 0.237 0.763 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.481 12.391 3.485 12.881 hybrid contribution 0.514 0.473 1.573 1.721 sum 0.034 12.864 5.058 13.823 Atomic orbital electron populations 1.20567 0.83894 1.04910 1.04127 1.22768 0.94045 0.83117 0.98803 1.83729 1.17142 1.35063 1.71777 1.23784 0.83495 0.96338 1.07671 1.22967 0.97032 0.94515 1.05744 1.21345 0.93205 0.94364 1.14981 1.17215 0.85707 0.83707 0.76878 1.90697 1.16750 1.84182 1.52531 1.45686 1.09661 1.06297 1.72250 1.21039 0.96303 0.79021 1.00040 1.19331 0.94935 0.93459 0.91939 1.21170 1.09116 1.29978 1.01274 0.92901 1.25770 0.99549 0.93263 0.99116 1.70736 1.07134 1.40295 1.35094 0.83583 0.74726 0.76417 0.75855 1.20749 1.21464 1.21424 1.22901 0.99048 1.05179 0.95988 1.22750 0.99367 0.93768 1.05082 0.89651 0.90752 0.87211 0.77736 0.82436 0.76261 0.91767 0.94001 0.91268 0.90037 0.91390 0.91254 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.89 36.00 0.36 -0.62 16 2 C 0.07 0.97 7.37 -34.96 -0.26 0.71 16 3 O -0.18 -2.40 10.52 7.62 0.08 -2.32 16 4 C -0.05 -0.54 12.03 29.30 0.35 -0.19 16 5 C -0.18 -2.53 10.60 -37.46 -0.40 -2.92 16 6 C -0.23 -3.94 6.31 -103.28 -0.65 -4.59 16 7 C 0.58 11.60 7.81 -12.54 -0.10 11.50 16 8 O -0.56 -12.45 14.84 5.27 0.08 -12.37 16 9 N -0.69 -14.18 5.45 -61.40 -0.33 -14.51 16 10 C 0.16 3.64 5.43 -4.04 -0.02 3.62 16 11 C 0.00 0.10 0.99 -155.66 -0.15 -0.06 16 12 C -0.58 -15.04 8.44 -34.44 -0.29 -15.33 16 13 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 14 C 0.03 0.81 5.39 -17.82 -0.10 0.71 16 15 N -0.90 -25.96 13.57 55.43 0.75 -25.21 16 16 Si 1.07 24.19 29.91 -169.99 -5.08 19.11 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.19 -4.04 9.96 -26.69 -0.27 -4.30 16 21 C -0.17 -3.83 8.74 -26.69 -0.23 -4.07 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.11 1.57 6.48 -51.93 -0.34 1.24 16 25 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.16 1.93 7.74 -52.49 -0.41 1.52 16 27 H 0.40 7.75 7.40 -40.82 -0.30 7.45 16 28 H 0.06 1.65 7.82 -51.93 -0.41 1.25 16 29 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.28 7.93 6.19 -40.82 -0.25 7.68 16 31 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -30.93 297.03 -6.08 -37.01 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.29 Total: 9.35 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -1.76 Total: -15.54 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.42 Total: -39.72 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.16 Total: -14.69 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.08 Total: 19.11 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.93 -6.08 -37.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404184525.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.190 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds