Wall clock time and date at job start Mon Mar 30 2020 18:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33651 * 125.80132 * 2 1 4 4 C 1.34227 * 110.90581 * 180.02562 * 3 2 1 5 5 C 1.34181 * 109.12202 * 359.71279 * 4 3 2 6 6 C 1.36422 * 125.80145 * 180.02562 * 2 1 3 7 7 C 1.47379 * 127.18888 * 359.97438 * 6 2 1 8 8 O 1.21610 * 120.00134 * 0.02562 * 7 6 2 9 9 N 1.34775 * 119.99778 * 180.02562 * 7 6 2 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37872 * 119.99859 * 275.21340 * 12 11 10 15 15 N 1.31511 * 120.00409 * 7.12832 * 14 12 11 16 16 Si 1.86803 * 119.99995 * 187.13443 * 14 12 11 17 17 H 1.48496 * 109.47350 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.46931 * 299.99594 * 16 14 12 19 19 H 1.48495 * 109.47205 * 59.99500 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 H 1.08997 * 109.47031 * 269.99721 * 1 2 3 23 23 H 1.08998 * 109.47161 * 29.99362 * 1 2 3 24 24 H 1.08999 * 109.47624 * 149.99234 * 1 2 3 25 25 H 1.07998 * 125.43354 * 180.02562 * 4 3 2 26 26 H 1.07997 * 127.01707 * 180.27597 * 5 4 3 27 27 H 0.97003 * 119.99966 * 359.97438 * 9 7 6 28 28 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 29 29 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 30 30 H 0.97004 * 119.99607 * 355.40573 * 15 14 12 31 31 H 1.08991 * 117.49912 * 215.00345 * 20 11 10 32 32 H 1.09001 * 117.49471 * 0.02562 * 20 11 10 33 33 H 1.09005 * 117.50031 * 359.97438 * 21 11 10 34 34 H 1.09005 * 117.49813 * 144.97487 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5860 0.7389 -0.0006 5 6 3.6849 -0.5992 0.0054 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5158 -0.0006 8 8 0.6889 -2.7892 -0.0007 9 7 2.7929 -3.5016 -0.0006 10 6 2.3644 -4.9025 -0.0013 11 6 3.5900 -5.8108 0.1163 12 6 4.5827 -5.7124 -1.0132 13 1 5.4413 -5.0636 -0.9226 14 6 4.3948 -6.4507 -2.1624 15 7 3.2823 -7.1312 -2.3323 16 14 5.7205 -6.4846 -3.4780 17 1 5.2781 -7.3451 -4.6045 18 1 5.9619 -5.1056 -3.9731 19 1 6.9756 -7.0305 -2.9020 20 6 4.1401 -6.0770 1.5190 21 6 3.3936 -7.1816 0.7669 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5139 25 1 4.4172 1.4284 -0.0003 26 1 4.5927 -1.1841 0.0107 27 1 3.7381 -3.2835 -0.0009 28 1 1.8380 -5.1210 -0.9304 29 1 1.6988 -5.0792 0.8436 30 1 2.6229 -7.1679 -1.6218 31 1 5.2199 -6.1809 1.6248 32 1 3.6285 -5.6054 2.3581 33 1 2.3913 -7.4362 1.1115 34 1 3.9821 -8.0124 0.3775 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404184525.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:12 Heat of formation + Delta-G solvation = -32.432730 kcal Electronic energy + Delta-G solvation = -17903.728968 eV Core-core repulsion = 14995.779475 eV Total energy + Delta-G solvation = -2907.949492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.53080 -40.52119 -38.74560 -35.16023 -34.01921 -33.88982 -32.76068 -28.81727 -27.41942 -26.82490 -24.08176 -23.11525 -21.99658 -21.58475 -20.66093 -19.02758 -18.40937 -17.33755 -16.95736 -16.76723 -16.19802 -15.71154 -15.61382 -15.14616 -14.74558 -14.45664 -14.26614 -14.03317 -13.85342 -13.74858 -13.60009 -12.85293 -12.67919 -12.62874 -12.25185 -11.96417 -11.54810 -11.11324 -10.85845 -10.58284 -10.46709 -10.32851 -9.99809 -9.51738 -8.54255 -6.30135 0.32416 1.12588 1.55364 1.61834 1.80134 1.83327 2.29393 2.35216 2.58855 3.22333 3.26917 3.62533 3.82728 3.90137 4.03710 4.33112 4.35259 4.42092 4.51627 4.60683 4.63456 4.72404 4.80156 4.81279 4.91742 5.03570 5.20537 5.30701 5.36011 5.42075 5.53039 6.02836 6.11819 6.24295 6.64621 6.69429 7.23446 7.53508 8.85528 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.006115 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.977741 B = 4577.603677 C = 5019.651171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.070 3.930 3 O -0.176 6.176 4 C -0.022 4.022 5 C -0.205 4.205 6 C -0.273 4.273 7 C 0.574 3.426 8 O -0.590 6.590 9 N -0.691 5.691 10 C 0.175 3.825 11 C -0.021 4.021 12 C -0.578 4.578 13 H 0.054 0.946 14 C -0.020 4.020 15 N -0.931 5.931 16 Si 1.109 2.891 17 H -0.292 1.292 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.164 4.164 21 C -0.176 4.176 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.256 0.744 26 H 0.168 0.832 27 H 0.409 0.591 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 15.215 5.693 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.016 3.984 3 O -0.072 6.072 4 C -0.087 4.087 5 C -0.224 4.224 6 C -0.277 4.277 7 C 0.363 3.637 8 O -0.474 6.474 9 N -0.339 5.339 10 C 0.051 3.949 11 C -0.022 4.022 12 C -0.615 4.615 13 H 0.073 0.927 14 C -0.220 4.220 15 N -0.567 5.567 16 Si 0.932 3.068 17 H -0.218 1.218 18 H -0.199 1.199 19 H -0.195 1.195 20 C -0.201 4.201 21 C -0.214 4.214 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.103 0.897 25 H 0.271 0.729 26 H 0.186 0.814 27 H 0.245 0.755 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.066 14.704 4.191 15.326 hybrid contribution 0.030 -0.155 1.408 1.416 sum 1.096 14.549 5.599 15.628 Atomic orbital electron populations 1.20607 0.82718 1.05125 1.05041 1.23077 0.94965 0.83002 0.97339 1.83779 1.17929 1.34233 1.71295 1.24681 0.83563 0.96298 1.04155 1.23145 0.96024 0.95734 1.07483 1.21255 0.95594 0.92769 1.18092 1.17731 0.85158 0.85041 0.75726 1.90669 1.17961 1.84972 1.53825 1.45600 1.10126 1.05473 1.72723 1.20659 0.95811 0.80439 0.98017 1.19337 0.95218 0.94481 0.93143 1.21466 1.09228 1.29023 1.01808 0.92738 1.27036 1.00450 0.92933 1.01591 1.70842 1.08186 1.42509 1.35163 0.83027 0.73191 0.77027 0.73579 1.21757 1.19856 1.19489 1.22906 0.99454 1.02881 0.94837 1.22700 1.00117 0.93052 1.05560 0.88313 0.87762 0.89676 0.72868 0.81418 0.75550 0.95738 0.93785 0.92508 0.89363 0.89144 0.90098 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 9.89 71.23 0.70 -1.15 16 2 C 0.07 1.95 7.37 25.26 0.19 2.14 16 3 O -0.18 -4.13 10.52 4.37 0.05 -4.08 16 4 C -0.02 -0.42 12.03 66.89 0.80 0.38 16 5 C -0.20 -5.20 10.60 23.65 0.25 -4.95 16 6 C -0.27 -8.96 6.31 -18.99 -0.12 -9.08 16 7 C 0.57 23.41 7.81 86.65 0.68 24.09 16 8 O -0.59 -27.09 14.84 -4.06 -0.06 -27.15 16 9 N -0.69 -28.66 5.45 -466.41 -2.54 -31.21 16 10 C 0.18 8.20 5.43 86.38 0.47 8.67 16 11 C -0.02 -0.99 0.99 -52.93 -0.05 -1.04 16 12 C -0.58 -30.05 8.44 25.60 0.22 -29.83 16 13 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 14 C -0.02 -1.07 5.39 84.65 0.46 -0.62 16 15 N -0.93 -55.20 13.57 21.44 0.29 -54.91 16 16 Si 1.11 48.55 29.91 68.60 2.05 50.60 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 C -0.16 -6.55 9.96 30.62 0.30 -6.25 16 21 C -0.18 -7.87 8.74 30.62 0.27 -7.61 16 22 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 2.47 6.48 -2.39 -0.02 2.46 16 25 H 0.26 2.10 8.06 -2.91 -0.02 2.08 16 26 H 0.17 3.77 7.74 -2.91 -0.02 3.75 16 27 H 0.41 15.67 7.40 -92.71 -0.69 14.98 16 28 H 0.02 1.32 7.82 -2.39 -0.02 1.30 16 29 H 0.04 2.00 8.11 -2.39 -0.02 1.98 16 30 H 0.26 15.81 6.19 -92.71 -0.57 15.23 16 31 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 34 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -68.18 297.03 4.57 -63.61 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.62 Total: 28.41 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 4.16 Total: -25.26 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.25 Total: -86.12 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.01 Total: -31.24 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.05 Total: 50.60 kcal Total: -68.18 4.57 -63.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404184525.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.176 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds