Wall clock time and date at job start Mon Mar 30 2020 18:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35149 * 125.48292 * 2 1 4 4 C 1.40319 * 107.20044 * 179.72269 * 3 2 1 5 5 C 1.37946 * 106.52946 * 0.40971 * 4 3 2 6 6 C 1.41603 * 126.10297 * 179.85108 * 5 4 3 7 7 C 1.35632 * 120.00156 * 219.73406 * 6 5 4 8 8 C 1.41549 * 119.99679 * 8.89666 * 7 6 5 9 9 O 1.21783 * 120.00103 * 6.43859 * 8 7 6 10 10 N 1.34779 * 119.99782 * 186.43658 * 8 7 6 11 11 C 1.46498 * 120.00076 * 0.02562 * 10 8 7 12 12 C 1.46505 * 119.99749 * 180.02562 * 10 8 7 13 13 C 1.50698 * 109.46861 * 270.00132 * 12 10 8 14 14 H 1.07998 * 120.00440 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99874 * 180.02562 * 13 12 10 16 16 N 1.31520 * 120.00274 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00002 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47059 * 90.00066 * 17 15 13 19 19 H 1.48504 * 109.47062 * 209.99948 * 17 15 13 20 20 H 1.48492 * 109.47067 * 330.00115 * 17 15 13 21 21 O 1.34019 * 125.48054 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47400 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46828 * 300.00125 * 1 2 3 24 24 H 1.09000 * 109.47307 * 59.99515 * 1 2 3 25 25 H 1.07997 * 126.40394 * 359.97438 * 3 2 1 26 26 H 1.08009 * 126.73473 * 180.27868 * 4 3 2 27 27 H 1.08008 * 120.00357 * 39.73462 * 6 5 4 28 28 H 1.08000 * 120.00275 * 188.89557 * 7 6 5 29 29 H 1.08995 * 109.47032 * 269.99978 * 11 10 8 30 30 H 1.09000 * 109.47161 * 29.99528 * 11 10 8 31 31 H 1.08995 * 109.47195 * 149.99716 * 11 10 8 32 32 H 1.08997 * 109.47001 * 30.00290 * 12 10 8 33 33 H 1.08996 * 109.46919 * 150.00515 * 12 10 8 34 34 H 0.96998 * 120.00005 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2915 1.1005 0.0000 4 6 3.6239 0.6603 0.0065 5 6 3.5817 -0.7185 0.0007 6 6 4.6998 -1.5874 0.0012 7 6 4.6836 -2.7138 -0.7542 8 6 3.6376 -2.9277 -1.6836 9 8 2.8178 -2.0510 -1.8901 10 7 3.5488 -4.1015 -2.3399 11 6 4.5347 -5.1562 -2.0911 12 6 2.4664 -4.3227 -3.3021 13 6 1.2775 -4.9177 -2.5927 14 1 1.3233 -5.1114 -1.5312 15 6 0.1312 -5.2149 -3.2988 16 7 -0.9067 -5.7338 -2.6796 17 14 0.0516 -4.8793 -5.1347 18 1 0.5218 -6.0761 -5.8775 19 1 -1.3493 -4.5751 -5.5221 20 1 0.9191 -3.7200 -5.4640 21 8 2.2849 -1.0913 0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.9558 2.1269 -0.0004 26 1 4.5088 1.2796 0.0124 27 1 5.5655 -1.3534 0.6032 28 1 5.4689 -3.4474 -0.6468 29 1 5.3707 -5.0422 -2.7811 30 1 4.8969 -5.0804 -1.0658 31 1 4.0700 -6.1306 -2.2412 32 1 2.1819 -3.3723 -3.7537 33 1 2.8057 -5.0072 -4.0795 34 1 -1.7130 -5.9432 -3.1765 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491199261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:32 Heat of formation + Delta-G solvation = 12.463485 kcal Electronic energy + Delta-G solvation = -18260.204689 eV Core-core repulsion = 15354.202042 eV Total energy + Delta-G solvation = -2906.002646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.99983 -39.15791 -35.07196 -33.73721 -32.67553 -32.49173 -30.80614 -28.65209 -26.56022 -25.65670 -23.39327 -21.37784 -21.28282 -19.79546 -18.17602 -17.08304 -16.88964 -15.88219 -15.51943 -14.89077 -14.59470 -14.01816 -13.76690 -13.56100 -12.81320 -12.70540 -12.58807 -12.44310 -12.36367 -12.27389 -12.09368 -11.75657 -11.49797 -11.37218 -10.88593 -10.49156 -10.10826 -9.70365 -9.49639 -9.35755 -8.99197 -8.56365 -7.66958 -7.38593 -6.05712 -4.03587 0.94929 2.51053 3.03540 3.28248 3.36311 3.41716 3.54229 3.97779 4.13690 4.42269 5.01023 5.14042 5.23510 5.28487 5.35168 5.52043 5.68965 5.70585 5.77107 5.88182 5.99007 6.06294 6.07782 6.20114 6.28986 6.39243 6.63207 6.75562 6.95016 7.04860 7.42069 7.65229 7.69934 8.32138 8.51458 8.97750 9.07381 9.55033 11.07775 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020945 B = 0.007813 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.483270 B = 3582.983976 C = 4477.623096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 C -0.233 4.233 4 C -0.189 4.189 5 C 0.014 3.986 6 C -0.017 4.017 7 C -0.192 4.192 8 C 0.527 3.473 9 O -0.524 6.524 10 N -0.595 5.595 11 C 0.083 3.917 12 C 0.216 3.784 13 C -0.524 4.524 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.264 1.264 21 O -0.120 6.120 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.135 0.865 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.023 0.977 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.885 8.736 5.222 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.037 4.037 3 C -0.252 4.252 4 C -0.209 4.209 5 C -0.037 4.037 6 C -0.037 4.037 7 C -0.212 4.212 8 C 0.317 3.683 9 O -0.403 6.403 10 N -0.327 5.327 11 C -0.061 4.061 12 C 0.096 3.904 13 C -0.562 4.562 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.701 3.299 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.189 1.189 21 O -0.014 6.014 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.167 0.833 28 H 0.152 0.848 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.145 8.783 5.046 14.336 hybrid contribution 0.025 0.054 -1.028 1.030 sum 10.170 8.838 4.018 14.059 Atomic orbital electron populations 1.20322 0.85743 1.04628 1.02739 1.22580 0.94158 0.84453 1.02552 1.21242 0.92824 0.98823 1.12301 1.21989 0.97803 0.93026 1.08065 1.19489 0.83192 0.93004 1.07997 1.20527 0.94267 0.92230 0.96717 1.22574 1.01371 0.98759 0.98515 1.17014 0.85625 0.83026 0.82629 1.90834 1.41633 1.42733 1.65053 1.47770 1.28817 1.13346 1.42742 1.21684 0.91806 0.92573 1.00055 1.19625 0.85567 0.97224 0.88019 1.21335 0.96684 1.40918 0.97300 0.90804 1.24849 0.95330 0.94579 0.98265 1.69902 1.04068 1.43610 1.36175 0.86878 0.77843 0.79230 0.85991 1.20131 1.20964 1.18888 1.84331 1.15529 1.33556 1.67938 0.90036 0.90241 0.89794 0.84101 0.83898 0.83310 0.84777 0.93720 0.92042 0.90622 0.94168 0.95871 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.41 36.01 0.37 -0.79 16 2 C 0.02 0.29 7.30 -35.40 -0.26 0.03 16 3 C -0.23 -3.71 10.76 -39.90 -0.43 -4.14 16 4 C -0.19 -2.98 10.90 -38.91 -0.42 -3.40 16 5 C 0.01 0.25 5.32 -38.41 -0.20 0.04 16 6 C -0.02 -0.26 9.95 -39.23 -0.39 -0.65 16 7 C -0.19 -3.08 9.05 -39.25 -0.36 -3.43 16 8 C 0.53 11.44 7.24 -15.00 -0.11 11.33 16 9 O -0.52 -13.37 11.99 -19.72 -0.24 -13.60 16 10 N -0.59 -12.89 2.86 -186.42 -0.53 -13.42 16 11 C 0.08 1.32 10.08 59.85 0.60 1.92 16 12 C 0.22 5.50 4.23 -5.19 -0.02 5.48 16 13 C -0.52 -15.45 9.94 -34.44 -0.34 -15.80 16 14 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 17 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 21 O -0.12 -2.55 7.81 -20.12 -0.16 -2.71 16 22 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.14 1.77 8.06 -52.48 -0.42 1.34 16 27 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 28 H 0.13 1.61 6.21 -52.49 -0.33 1.29 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.81 6.18 -51.93 -0.32 0.49 16 31 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.04 1.11 6.48 -51.93 -0.34 0.77 16 33 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -36.43 293.04 -6.40 -42.83 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.34 Total: -0.13 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.65 Total: -7.38 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.24 Total: -40.72 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.39 Total: -16.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -36.43 -6.40 -42.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491199261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.297 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds