Wall clock time and date at job start Mon Mar 30 2020 18:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35155 * 125.48551 * 2 1 4 4 C 1.40317 * 107.20445 * 179.77727 * 3 2 1 5 5 C 1.37942 * 106.52907 * 0.35703 * 4 3 2 6 6 C 1.41609 * 126.10225 * 179.90389 * 5 4 3 7 7 C 1.35628 * 120.00190 * 220.03564 * 6 5 4 8 8 C 1.41551 * 119.99754 * 8.65253 * 7 6 5 9 9 O 1.21777 * 120.00146 * 6.42428 * 8 7 6 10 10 N 1.34784 * 119.99574 * 186.41594 * 8 7 6 11 11 C 1.46502 * 119.99604 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46902 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47105 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00059 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00066 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00060 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99864 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47168 * 89.99948 * 17 15 13 19 19 H 1.48499 * 109.46914 * 209.99764 * 17 15 13 20 20 H 1.48495 * 109.47144 * 329.99939 * 17 15 13 21 21 O 1.34021 * 125.48132 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47218 * 299.97432 * 1 2 3 24 24 H 1.09002 * 109.47131 * 59.97139 * 1 2 3 25 25 H 1.08005 * 126.39557 * 0.02864 * 3 2 1 26 26 H 1.07999 * 126.73348 * 180.22900 * 4 3 2 27 27 H 1.08001 * 120.00026 * 40.03484 * 6 5 4 28 28 H 1.08004 * 119.99976 * 188.93784 * 7 6 5 29 29 H 0.96994 * 120.00274 * 0.02562 * 10 8 7 30 30 H 1.09007 * 109.46993 * 300.00264 * 11 10 8 31 31 H 1.09000 * 109.47384 * 60.00115 * 11 10 8 32 32 H 1.09001 * 109.47249 * 299.99523 * 12 11 10 33 33 H 1.09005 * 109.47326 * 60.00239 * 12 11 10 34 34 H 0.96999 * 119.99966 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2915 1.1005 0.0000 4 6 3.6239 0.6604 0.0052 5 6 3.5817 -0.7184 -0.0001 6 6 4.6998 -1.5874 0.0006 7 6 4.6861 -2.7108 -0.7592 8 6 3.6401 -2.9236 -1.6889 9 8 2.8180 -2.0483 -1.8915 10 7 3.5542 -4.0950 -2.3500 11 6 2.4719 -4.3151 -3.3126 12 6 2.6038 -5.7144 -3.9170 13 6 1.4902 -5.9411 -4.9067 14 1 0.7615 -5.1646 -5.0870 15 6 1.4016 -7.1398 -5.5822 16 7 2.2892 -8.0852 -5.3631 17 14 0.0216 -7.4205 -6.8096 18 1 0.4604 -6.9780 -8.1575 19 1 -0.3191 -8.8653 -6.8494 20 1 -1.1734 -6.6412 -6.3975 21 8 2.2848 -1.0913 -0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5143 -0.8897 25 1 1.9556 2.1270 0.0004 26 1 4.5087 1.2796 0.0101 27 1 5.5636 -1.3555 0.6061 28 1 5.4707 -3.4451 -0.6516 29 1 4.2088 -4.7923 -2.1884 30 1 1.5111 -4.2279 -2.8052 31 1 2.5333 -3.5694 -4.1052 32 1 3.5646 -5.8020 -4.4243 33 1 2.5421 -6.4600 -3.1242 34 1 2.2266 -8.9287 -5.8380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492452511.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:37 Heat of formation + Delta-G solvation = -33.734914 kcal Electronic energy + Delta-G solvation = -17397.037460 eV Core-core repulsion = 14489.031500 eV Total energy + Delta-G solvation = -2908.005959 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.33041 -40.73054 -36.73013 -35.08436 -34.79799 -33.99102 -32.26231 -31.38682 -28.02157 -26.56580 -24.18482 -22.70704 -22.62687 -21.63311 -20.41055 -18.80269 -18.37781 -17.17970 -16.96473 -16.52803 -16.39696 -16.13778 -15.27640 -15.00058 -14.74127 -14.32179 -14.12395 -13.89125 -13.75985 -13.66446 -13.23346 -13.14667 -12.95383 -12.69991 -12.53948 -12.26369 -11.67603 -11.48565 -11.00379 -10.87498 -10.63143 -10.59700 -9.94790 -8.74383 -8.25959 -6.36878 -0.34185 1.17623 1.40158 1.40954 1.52515 1.76889 2.24369 2.34762 2.51730 2.57687 3.08531 3.84031 3.99597 4.08263 4.18873 4.44979 4.46175 4.49460 4.56535 4.67910 4.81788 4.83932 4.87843 4.89070 5.14627 5.19265 5.29434 5.44236 5.50889 5.55414 5.74452 5.77713 6.14431 6.37020 6.69842 6.76094 7.32545 7.36018 8.86040 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.004312 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.387326 B = 6491.709775 C = 7189.675066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.018 4.018 3 C -0.234 4.234 4 C -0.182 4.182 5 C -0.024 4.024 6 C 0.012 3.988 7 C -0.215 4.215 8 C 0.520 3.480 9 O -0.576 6.576 10 N -0.716 5.716 11 C 0.145 3.855 12 C 0.023 3.977 13 C -0.549 4.549 14 H 0.056 0.944 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.267 1.267 21 O -0.163 6.163 22 H 0.062 0.938 23 H 0.110 0.890 24 H 0.093 0.907 25 H 0.169 0.831 26 H 0.176 0.824 27 H 0.204 0.796 28 H 0.176 0.824 29 H 0.410 0.590 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 15.249 13.448 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 C -0.252 4.252 4 C -0.201 4.201 5 C -0.074 4.074 6 C -0.008 4.008 7 C -0.235 4.235 8 C 0.312 3.688 9 O -0.458 6.458 10 N -0.367 5.367 11 C 0.021 3.979 12 C -0.014 4.014 13 C -0.587 4.587 14 H 0.074 0.926 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.191 1.191 21 O -0.058 6.058 22 H 0.081 0.919 23 H 0.129 0.871 24 H 0.112 0.888 25 H 0.187 0.813 26 H 0.194 0.806 27 H 0.221 0.779 28 H 0.193 0.807 29 H 0.246 0.754 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.742 15.348 13.233 20.607 hybrid contribution -0.327 -0.751 -0.900 1.217 sum 3.415 14.597 12.332 19.412 Atomic orbital electron populations 1.20445 0.83917 1.03852 1.04900 1.23315 0.95585 0.84631 1.03538 1.21716 0.92883 0.99877 1.10769 1.22518 0.99080 0.92796 1.05736 1.20262 0.83112 0.94649 1.09359 1.21241 0.94379 0.90069 0.95072 1.22467 1.01077 1.01306 0.98653 1.17963 0.86307 0.81989 0.82585 1.90826 1.43698 1.43902 1.67421 1.46105 1.31035 1.16983 1.42582 1.21110 0.88812 0.97876 0.90076 1.19128 0.96640 0.90584 0.95045 1.21455 1.12541 1.00727 1.23993 0.92553 1.25876 0.98798 0.95537 0.98861 1.70056 1.36931 1.06192 1.43397 0.85432 0.79104 0.77515 0.78925 1.19663 1.20297 1.19143 1.84223 1.17026 1.35266 1.69317 0.91864 0.87121 0.88843 0.81344 0.80641 0.77942 0.80704 0.75403 0.94222 0.94082 0.97292 0.97381 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.41 71.23 0.74 -0.89 16 2 C -0.02 -0.54 7.30 24.97 0.18 -0.36 16 3 C -0.23 -5.88 10.76 22.07 0.24 -5.65 16 4 C -0.18 -4.50 10.90 22.71 0.25 -4.25 16 5 C -0.02 -0.70 5.32 23.03 0.12 -0.58 16 6 C 0.01 0.25 9.95 22.50 0.22 0.48 16 7 C -0.21 -5.27 9.85 22.48 0.22 -5.05 16 8 C 0.52 18.73 7.36 85.06 0.63 19.36 16 9 O -0.58 -25.19 12.41 19.15 0.24 -24.95 16 10 N -0.72 -26.53 5.55 -472.17 -2.62 -29.15 16 11 C 0.15 6.64 5.61 86.38 0.48 7.13 16 12 C 0.02 1.23 5.09 29.85 0.15 1.38 16 13 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.01 0.46 5.46 84.66 0.46 0.92 16 16 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 17 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 O -0.16 -5.72 7.81 17.56 0.14 -5.58 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 26 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 27 H 0.20 2.11 8.06 -2.91 -0.02 2.08 16 28 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.41 12.82 8.43 -92.71 -0.78 12.04 16 30 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -75.44 300.74 4.32 -71.12 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.32 Total: 15.84 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 3.93 Total: -18.79 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.33 Total: -83.89 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: 0.37 Total: -30.53 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -75.44 4.32 -71.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492452511.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.389 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds