Wall clock time and date at job start Mon Mar 30 2020 18:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35163 * 125.47754 * 2 1 4 4 C 1.40317 * 107.20075 * 179.72457 * 3 2 1 5 5 C 1.37947 * 106.52781 * 0.40859 * 4 3 2 6 6 C 1.41613 * 126.10194 * 179.85199 * 5 4 3 7 7 C 1.35622 * 120.00108 * 179.71439 * 6 5 4 8 8 C 1.41555 * 120.00180 * 180.02562 * 7 6 5 9 9 O 1.21783 * 119.99725 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00143 * 179.72945 * 8 7 6 11 11 C 1.46495 * 119.99663 * 180.27844 * 10 8 7 12 12 C 1.53004 * 109.46738 * 179.97438 * 11 10 8 13 13 C 1.50708 * 109.47029 * 179.97438 * 12 11 10 14 14 H 1.07991 * 119.99807 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99760 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00347 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99775 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46646 * 60.00746 * 17 15 13 19 19 H 1.48504 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47259 * 300.00508 * 17 15 13 21 21 O 1.34019 * 125.48858 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.46800 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47324 * 299.99889 * 1 2 3 24 24 H 1.09001 * 109.47593 * 60.00325 * 1 2 3 25 25 H 1.08001 * 126.39911 * 359.97438 * 3 2 1 26 26 H 1.08000 * 126.73387 * 180.29624 * 4 3 2 27 27 H 1.08001 * 119.99624 * 359.72126 * 6 5 4 28 28 H 1.08001 * 120.00267 * 0.02562 * 7 6 5 29 29 H 0.97000 * 119.99736 * 0.27114 * 10 8 7 30 30 H 1.08999 * 109.47534 * 299.99482 * 11 10 8 31 31 H 1.08997 * 109.47774 * 59.99894 * 11 10 8 32 32 H 1.09006 * 109.47053 * 299.99454 * 12 11 10 33 33 H 1.08997 * 109.47419 * 59.99839 * 12 11 10 34 34 H 0.96996 * 120.00389 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1007 0.0000 4 6 3.6238 0.6607 0.0064 5 6 3.5818 -0.7182 0.0007 6 6 4.7000 -1.5871 0.0012 7 6 4.5148 -2.9306 0.0009 8 6 5.6325 -3.7992 0.0019 9 8 6.7605 -3.3400 0.0035 10 7 5.4485 -5.1343 0.0072 11 6 6.6053 -6.0331 0.0144 12 6 6.1229 -7.4851 0.0199 13 6 7.3129 -8.4098 0.0267 14 1 8.3131 -8.0025 0.0274 15 6 7.1246 -9.7756 0.0330 16 7 5.9065 -10.2715 0.0326 17 14 8.5996 -10.9217 0.0407 18 1 9.4181 -10.6669 1.2533 19 1 8.1314 -12.3310 0.0462 20 1 9.4219 -10.6785 -1.1717 21 8 2.2850 -1.0912 0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.9555 2.1271 -0.0004 26 1 4.5086 1.2800 0.0127 27 1 5.7003 -1.1798 0.0018 28 1 3.5145 -3.3379 -0.0001 29 1 4.5500 -5.5000 0.0063 30 1 7.2100 -5.8542 -0.8747 31 1 7.2050 -5.8465 0.9052 32 1 5.5184 -7.6637 0.9093 33 1 5.5230 -7.6721 -0.8707 34 1 5.7740 -11.2324 0.0367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492452512.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:38 Heat of formation + Delta-G solvation = -23.119584 kcal Electronic energy + Delta-G solvation = -16536.336381 eV Core-core repulsion = 13628.790737 eV Total energy + Delta-G solvation = -2907.545644 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.78796 -39.40021 -35.06180 -34.22391 -33.49955 -32.83359 -31.46190 -29.71693 -27.18192 -24.86296 -22.92936 -22.09222 -20.97516 -20.49844 -19.33970 -17.33344 -16.49174 -16.45512 -16.30204 -15.23863 -14.85142 -14.65384 -14.46160 -13.67431 -13.44115 -13.42757 -13.20103 -13.05403 -12.69653 -12.29996 -12.27342 -12.04845 -11.19858 -11.02552 -10.70599 -10.64909 -10.30292 -9.99836 -9.85919 -9.49131 -9.22719 -8.54615 -8.36413 -7.95833 -6.08039 -4.10985 0.38031 1.90580 2.57526 2.61771 3.32264 3.35881 3.39037 3.70367 3.82112 4.41260 4.44295 4.64914 4.75081 4.93097 5.07224 5.09855 5.28838 5.29123 5.41788 5.45665 5.57737 5.88385 5.97366 6.11615 6.28246 6.37109 6.42595 6.75885 6.88891 6.93767 7.53261 7.63335 7.90073 8.03356 8.29067 8.65641 8.94873 9.53716 11.03601 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.052122 B = 0.003060 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.067940 B = 9147.242360 C = 9658.539059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.000 4.000 3 C -0.217 4.217 4 C -0.168 4.168 5 C -0.002 4.002 6 C -0.008 4.008 7 C -0.190 4.190 8 C 0.536 3.464 9 O -0.558 6.558 10 N -0.715 5.715 11 C 0.120 3.880 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.164 6.164 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.151 0.849 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.128 0.872 29 H 0.399 0.601 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 21.048 -0.067 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C -0.236 4.236 4 C -0.187 4.187 5 C -0.051 4.051 6 C -0.028 4.028 7 C -0.211 4.211 8 C 0.325 3.675 9 O -0.440 6.440 10 N -0.364 5.364 11 C -0.002 4.002 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.060 6.060 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.169 0.831 26 H 0.173 0.827 27 H 0.178 0.822 28 H 0.146 0.854 29 H 0.233 0.767 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.882 20.835 -0.065 23.506 hybrid contribution 0.312 -0.770 0.004 0.831 sum -10.570 20.065 -0.061 22.679 Atomic orbital electron populations 1.20379 0.84922 1.04391 1.03713 1.22714 0.94229 0.84096 1.04086 1.21485 0.92738 0.99480 1.09882 1.22313 0.98425 0.93187 1.04765 1.19887 0.81956 0.93560 1.09704 1.20637 0.95383 0.92216 0.94529 1.22261 0.99734 0.94435 1.04628 1.17013 0.89281 0.83147 0.78021 1.90805 1.25278 1.76681 1.51217 1.46298 1.11435 1.05862 1.72777 1.21737 0.86722 0.90877 1.00872 1.19328 0.97487 0.87860 0.97860 1.21023 0.92703 0.90942 1.51432 0.92271 1.24999 0.95966 0.98343 0.94985 1.69944 1.20348 1.12739 1.50331 0.86565 0.82639 0.79498 0.78787 1.20098 1.21245 1.20101 1.84060 1.16404 1.34757 1.70757 0.90306 0.89437 0.89437 0.83105 0.82657 0.82205 0.85385 0.76734 0.92432 0.92436 0.95924 0.95925 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.41 36.01 0.37 -0.05 16 2 C 0.00 0.00 7.30 -35.40 -0.26 -0.25 16 3 C -0.22 -1.94 10.76 -39.89 -0.43 -2.37 16 4 C -0.17 -1.69 10.90 -38.91 -0.42 -2.11 16 5 C 0.00 -0.02 6.84 -38.40 -0.26 -0.29 16 6 C -0.01 -0.10 9.39 -39.23 -0.37 -0.47 16 7 C -0.19 -2.67 9.41 -39.25 -0.37 -3.04 16 8 C 0.54 9.58 7.56 -15.00 -0.11 9.46 16 9 O -0.56 -11.78 16.11 5.11 0.08 -11.70 16 10 N -0.72 -13.06 5.55 -63.24 -0.35 -13.41 16 11 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 12 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 13 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 O -0.16 -1.96 10.18 4.71 0.05 -1.91 16 22 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 26 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.16 1.98 7.46 -52.49 -0.39 1.59 16 28 H 0.13 1.57 7.72 -52.49 -0.41 1.17 16 29 H 0.40 6.32 8.43 -40.82 -0.34 5.97 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -32.93 306.58 -6.80 -39.73 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.49 Total: 1.57 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.43 Total: -9.78 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.39 Total: -39.07 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.13 Total: -13.61 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.93 -6.80 -39.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492452512.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.607 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds