Wall clock time and date at job start Mon Mar 30 2020 18:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35163 * 125.47754 * 2 1 4 4 C 1.40317 * 107.20075 * 179.72457 * 3 2 1 5 5 C 1.37947 * 106.52781 * 0.40859 * 4 3 2 6 6 C 1.41613 * 126.10194 * 179.85199 * 5 4 3 7 7 C 1.35622 * 120.00108 * 179.71439 * 6 5 4 8 8 C 1.41555 * 120.00180 * 180.02562 * 7 6 5 9 9 O 1.21783 * 119.99725 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00143 * 179.72945 * 8 7 6 11 11 C 1.46495 * 119.99663 * 180.27844 * 10 8 7 12 12 C 1.53004 * 109.46738 * 179.97438 * 11 10 8 13 13 C 1.50708 * 109.47029 * 179.97438 * 12 11 10 14 14 H 1.07991 * 119.99807 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99760 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00347 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99775 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46646 * 60.00746 * 17 15 13 19 19 H 1.48504 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47259 * 300.00508 * 17 15 13 21 21 O 1.34019 * 125.48858 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.46800 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47324 * 299.99889 * 1 2 3 24 24 H 1.09001 * 109.47593 * 60.00325 * 1 2 3 25 25 H 1.08001 * 126.39911 * 359.97438 * 3 2 1 26 26 H 1.08000 * 126.73387 * 180.29624 * 4 3 2 27 27 H 1.08001 * 119.99624 * 359.72126 * 6 5 4 28 28 H 1.08001 * 120.00267 * 0.02562 * 7 6 5 29 29 H 0.97000 * 119.99736 * 0.27114 * 10 8 7 30 30 H 1.08999 * 109.47534 * 299.99482 * 11 10 8 31 31 H 1.08997 * 109.47774 * 59.99894 * 11 10 8 32 32 H 1.09006 * 109.47053 * 299.99454 * 12 11 10 33 33 H 1.08997 * 109.47419 * 59.99839 * 12 11 10 34 34 H 0.96996 * 120.00389 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1007 0.0000 4 6 3.6238 0.6607 0.0064 5 6 3.5818 -0.7182 0.0007 6 6 4.7000 -1.5871 0.0012 7 6 4.5148 -2.9306 0.0009 8 6 5.6325 -3.7992 0.0019 9 8 6.7605 -3.3400 0.0035 10 7 5.4485 -5.1343 0.0072 11 6 6.6053 -6.0331 0.0144 12 6 6.1229 -7.4851 0.0199 13 6 7.3129 -8.4098 0.0267 14 1 8.3131 -8.0025 0.0274 15 6 7.1246 -9.7756 0.0330 16 7 5.9065 -10.2715 0.0326 17 14 8.5996 -10.9217 0.0407 18 1 9.4181 -10.6669 1.2533 19 1 8.1314 -12.3310 0.0462 20 1 9.4219 -10.6785 -1.1717 21 8 2.2850 -1.0912 0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.9555 2.1271 -0.0004 26 1 4.5086 1.2800 0.0127 27 1 5.7003 -1.1798 0.0018 28 1 3.5145 -3.3379 -0.0001 29 1 4.5500 -5.5000 0.0063 30 1 7.2100 -5.8542 -0.8747 31 1 7.2050 -5.8465 0.9052 32 1 5.5184 -7.6637 0.9093 33 1 5.5230 -7.6721 -0.8707 34 1 5.7740 -11.2324 0.0367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492452512.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:38 Heat of formation + Delta-G solvation = -44.474678 kcal Electronic energy + Delta-G solvation = -16537.262407 eV Core-core repulsion = 13628.790737 eV Total energy + Delta-G solvation = -2908.471670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.58006 -40.84844 -36.72762 -35.32242 -34.83022 -34.25293 -32.35470 -31.43473 -28.25224 -26.57507 -24.16792 -22.88280 -22.73149 -21.57874 -20.50149 -18.73676 -18.21099 -17.50241 -17.29515 -16.56908 -16.47383 -16.45660 -15.55211 -15.02804 -14.86101 -14.29846 -14.10851 -13.89786 -13.80957 -13.56774 -13.26297 -13.23626 -12.94030 -12.72630 -12.54258 -12.26234 -11.69070 -11.66425 -11.50149 -11.01136 -10.77349 -10.61085 -10.05109 -8.85107 -8.24797 -6.35823 -0.61298 1.08353 1.41287 1.44093 1.52069 1.67800 1.87748 2.31536 2.42702 2.49739 3.09696 3.68118 3.86180 3.95588 4.09366 4.23299 4.47999 4.48800 4.49553 4.68213 4.73734 4.80769 4.83812 4.88544 5.11968 5.13604 5.25526 5.27700 5.48716 5.56036 5.56252 5.77499 6.09885 6.14827 6.60877 6.77245 7.23551 7.33529 8.87081 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.052122 B = 0.003060 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.067940 B = 9147.242360 C = 9658.539059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.005 3.995 3 C -0.227 4.227 4 C -0.148 4.148 5 C -0.048 4.048 6 C 0.027 3.973 7 C -0.223 4.223 8 C 0.542 3.458 9 O -0.598 6.598 10 N -0.714 5.714 11 C 0.140 3.860 12 C 0.022 3.978 13 C -0.549 4.549 14 H 0.060 0.940 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 O -0.183 6.183 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.181 0.819 26 H 0.177 0.823 27 H 0.161 0.839 28 H 0.143 0.857 29 H 0.410 0.590 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 22.791 -0.066 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C -0.246 4.246 4 C -0.167 4.167 5 C -0.096 4.096 6 C 0.007 3.993 7 C -0.243 4.243 8 C 0.334 3.666 9 O -0.482 6.482 10 N -0.364 5.364 11 C 0.016 3.984 12 C -0.015 4.015 13 C -0.587 4.587 14 H 0.078 0.922 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.193 1.193 21 O -0.080 6.080 22 H 0.096 0.904 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.198 0.802 26 H 0.194 0.806 27 H 0.179 0.821 28 H 0.161 0.839 29 H 0.246 0.754 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.720 22.589 -0.064 25.448 hybrid contribution 0.401 -1.065 0.003 1.138 sum -11.319 21.524 -0.060 24.319 Atomic orbital electron populations 1.20621 0.82231 1.05056 1.05651 1.23638 0.95866 0.83720 1.01457 1.21906 0.92025 1.00849 1.09782 1.22775 0.99982 0.92585 1.01392 1.19859 0.81958 0.94201 1.13560 1.20727 0.96046 0.91880 0.90641 1.21950 0.98818 0.94288 1.09265 1.17460 0.89761 0.82889 0.76509 1.90773 1.26996 1.77126 1.53344 1.46107 1.10970 1.05913 1.73384 1.21243 0.87576 0.89656 0.99931 1.19139 0.96417 0.89647 0.96300 1.21453 0.93541 0.92013 1.51741 0.92195 1.25904 0.99011 1.00017 0.94327 1.70055 1.22440 1.13299 1.50909 0.85470 0.78954 0.77279 0.79178 1.19267 1.20510 1.19276 1.84056 1.16616 1.36103 1.71230 0.90351 0.87372 0.87369 0.80186 0.80558 0.82121 0.83932 0.75379 0.93385 0.93390 0.97376 0.97377 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.41 71.24 0.74 0.12 16 2 C 0.00 0.08 7.30 24.98 0.18 0.26 16 3 C -0.23 -3.33 10.76 22.07 0.24 -3.10 16 4 C -0.15 -2.62 10.90 22.71 0.25 -2.37 16 5 C -0.05 -1.08 6.84 23.03 0.16 -0.92 16 6 C 0.03 0.68 9.39 22.50 0.21 0.90 16 7 C -0.22 -6.35 9.41 22.48 0.21 -6.14 16 8 C 0.54 19.84 7.56 85.06 0.64 20.48 16 9 O -0.60 -25.91 16.11 -4.61 -0.07 -25.99 16 10 N -0.71 -26.86 5.55 -472.18 -2.62 -29.48 16 11 C 0.14 6.31 5.61 86.38 0.48 6.79 16 12 C 0.02 1.17 5.09 29.85 0.15 1.32 16 13 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 17 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 O -0.18 -4.15 10.18 -6.06 -0.06 -4.21 16 22 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 23 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 26 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 27 H 0.16 3.95 7.46 -2.91 -0.02 3.93 16 28 H 0.14 3.54 7.72 -2.91 -0.02 3.52 16 29 H 0.41 13.40 8.43 -92.71 -0.78 12.61 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -71.29 306.58 3.84 -67.45 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.32 Total: 14.02 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.96 Total: -13.00 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.33 Total: -84.51 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.14 Total: -30.19 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -71.29 3.84 -67.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492452512.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.971 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds