Wall clock time and date at job start Mon Mar 30 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37798 * 119.92549 * 2 1 4 4 C 1.39916 * 119.84636 * 179.97438 * 3 2 1 5 5 C 1.47054 * 120.14514 * 179.97438 * 4 3 2 6 6 C 1.35045 * 120.00025 * 180.02562 * 5 4 3 7 7 C 1.46149 * 120.00053 * 180.02562 * 6 5 4 8 8 O 1.21767 * 119.99952 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00133 * 179.97438 * 7 6 5 10 10 C 1.36735 * 119.99936 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00301 * 0.02562 * 10 9 7 12 12 C 1.39113 * 119.99896 * 180.02562 * 10 9 7 13 13 N 1.31329 * 120.00161 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00160 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46963 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46993 * 119.99404 * 14 12 10 17 17 H 1.48496 * 109.47112 * 239.99939 * 14 12 10 18 18 C 1.39946 * 119.70914 * 0.02562 * 4 3 2 19 19 C 1.37759 * 119.84953 * 0.02562 * 18 4 3 20 20 C 1.38675 * 119.92580 * 180.02562 * 2 1 3 21 21 F 1.35106 * 119.85114 * 359.72915 * 20 2 1 22 22 H 1.08998 * 109.47271 * 269.97687 * 1 2 3 23 23 H 1.09004 * 109.47035 * 29.98016 * 1 2 3 24 24 H 1.09004 * 109.47139 * 149.97361 * 1 2 3 25 25 H 1.07999 * 120.07718 * 359.97438 * 3 2 1 26 26 H 1.08005 * 119.99593 * 0.02562 * 5 4 3 27 27 H 1.08005 * 120.00386 * 359.97438 * 6 5 4 28 28 H 0.96994 * 120.00453 * 0.02562 * 9 7 6 29 29 H 0.96998 * 120.00585 * 179.97438 * 13 12 10 30 30 H 1.08005 * 120.07580 * 179.97438 * 18 4 3 31 31 H 1.08004 * 119.92826 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1943 0.0000 4 6 3.5936 1.1923 0.0005 5 6 4.3338 2.4630 0.0000 6 6 5.6843 2.4577 0.0000 7 6 6.4200 3.7205 0.0000 8 8 5.8153 4.7774 -0.0005 9 7 7.7677 3.7153 0.0005 10 6 8.4560 4.8967 0.0000 11 1 7.9197 5.8341 -0.0004 12 6 9.8471 4.8913 0.0000 13 7 10.4994 3.7514 0.0010 14 14 10.7875 6.5054 0.0000 15 1 9.8269 7.6379 0.0006 16 1 11.6414 6.5807 1.2126 17 1 11.6415 6.5807 -1.2125 18 6 4.2855 -0.0241 0.0005 19 6 3.5859 -1.2109 -0.0005 20 6 2.1988 -1.2019 -0.0005 21 9 1.5187 -2.3693 0.0045 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5143 25 1 1.6545 2.1296 -0.0004 26 1 3.7974 3.4004 -0.0004 27 1 6.2207 1.5203 0.0008 28 1 8.2495 2.8734 0.0005 29 1 11.4693 3.7476 0.0006 30 1 5.3655 -0.0325 0.0005 31 1 4.1186 -2.1504 -0.0010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493136349.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:39 Heat of formation + Delta-G solvation = -55.399963 kcal Electronic energy + Delta-G solvation = -16466.226163 eV Core-core repulsion = 13433.820432 eV Total energy + Delta-G solvation = -3032.405731 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.93051 -39.24878 -38.12105 -34.39802 -33.71852 -32.30968 -31.38745 -29.43153 -26.96753 -25.48665 -23.24203 -22.51879 -20.38323 -18.63902 -17.89635 -17.58535 -16.72162 -16.04268 -15.72086 -14.99037 -14.65489 -14.21816 -13.91801 -13.60114 -13.45938 -13.38446 -13.26166 -12.77605 -12.59297 -12.20710 -11.84362 -11.65030 -11.36759 -11.22418 -10.81169 -10.44666 -10.36601 -9.88441 -9.59325 -8.96431 -8.50886 -8.14333 -7.86646 -6.62508 -3.91811 0.67992 1.19928 2.26491 3.11662 3.18712 3.26186 3.68383 4.05155 4.21004 4.34404 4.55397 4.67025 4.74735 5.10539 5.20251 5.22873 5.24381 5.41636 5.48674 5.52017 5.70239 5.92287 6.02118 6.11565 6.21572 6.22927 6.33950 6.84377 6.92651 6.96499 7.37080 7.92720 8.46716 9.01834 9.38523 9.96644 10.54017 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.056357 B = 0.003620 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.713918 B = 7733.434933 C = 8215.003757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 C -0.086 4.086 4 C -0.045 4.045 5 C -0.096 4.096 6 C -0.145 4.145 7 C 0.448 3.552 8 O -0.605 6.605 9 N -0.540 5.540 10 C -0.292 4.292 11 H 0.109 0.891 12 C 0.023 3.977 13 N -0.886 5.886 14 Si 0.934 3.066 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.096 4.096 19 C -0.145 4.145 20 C 0.081 3.919 21 F -0.143 7.143 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.115 0.885 28 H 0.394 0.606 29 H 0.276 0.724 30 H 0.138 0.862 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -9.947 0.007 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.045 4.045 5 C -0.117 4.117 6 C -0.166 4.166 7 C 0.238 3.762 8 O -0.494 6.494 9 N -0.172 5.172 10 C -0.422 4.422 11 H 0.127 0.873 12 C -0.181 4.181 13 N -0.525 5.525 14 Si 0.761 3.239 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.114 4.114 19 C -0.163 4.163 20 C 0.062 3.938 21 F -0.122 7.122 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.133 0.867 28 H 0.228 0.772 29 H 0.086 0.914 30 H 0.155 0.845 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.775 -9.312 0.008 15.809 hybrid contribution 0.883 -0.133 0.004 0.893 sum -11.892 -9.445 0.012 15.186 Atomic orbital electron populations 1.20717 0.90293 1.03206 1.02716 1.19815 0.96873 0.91851 1.03372 1.21112 0.93083 0.97172 0.99097 1.19202 0.93040 0.93381 0.98894 1.21962 0.94060 0.95474 1.00238 1.23223 0.95157 0.98101 1.00158 1.17757 0.82768 0.88938 0.86725 1.90648 1.68184 1.32549 1.57977 1.41922 1.04840 1.09644 1.60783 1.19921 0.88898 0.87264 1.46133 0.87312 1.25430 0.96822 0.99101 0.96756 1.69581 1.09269 1.25721 1.47950 0.85716 0.79215 0.81067 0.77936 1.18911 1.20470 1.20464 1.21317 1.00575 0.90808 0.98691 1.21021 0.92020 0.99739 1.03568 1.17651 0.89954 0.80813 1.05412 1.91451 1.80215 1.46438 1.94085 0.90904 0.90904 0.91364 0.84701 0.84930 0.86725 0.77191 0.91392 0.84479 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.83 36.01 0.35 -0.66 16 2 C -0.12 -1.39 5.88 -104.62 -0.62 -2.00 16 3 C -0.09 -1.07 9.44 -39.11 -0.37 -1.44 16 4 C -0.04 -0.63 5.87 -105.06 -0.62 -1.25 16 5 C -0.10 -1.60 9.46 -37.14 -0.35 -1.95 16 6 C -0.14 -2.69 9.40 -37.54 -0.35 -3.04 16 7 C 0.45 10.83 7.68 -13.09 -0.10 10.73 16 8 O -0.61 -16.76 15.80 5.13 0.08 -16.68 16 9 N -0.54 -13.63 5.27 -12.33 -0.06 -13.70 16 10 C -0.29 -7.99 9.68 -15.04 -0.15 -8.14 16 11 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 12 C 0.02 0.59 5.50 -17.44 -0.10 0.49 16 13 N -0.89 -23.24 13.05 55.50 0.72 -22.52 16 14 Si 0.93 20.27 29.55 -169.99 -5.02 15.24 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 C -0.10 -1.23 9.41 -39.12 -0.37 -1.59 16 19 C -0.14 -1.72 10.01 -39.58 -0.40 -2.11 16 20 C 0.08 1.00 7.25 -39.25 -0.28 0.72 16 21 F -0.14 -1.78 16.46 2.25 0.04 -1.74 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 24 H 0.07 0.59 7.63 -51.93 -0.40 0.20 16 25 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.13 2.33 7.52 -52.48 -0.39 1.93 16 27 H 0.11 1.78 6.07 -52.48 -0.32 1.47 16 28 H 0.39 9.40 7.87 -40.82 -0.32 9.08 16 29 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.14 1.59 6.17 -52.48 -0.32 1.27 16 31 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -30.21 283.91 -6.26 -36.47 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -2.95 Total: 8.89 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.34 Total: -10.24 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.66 Total: -36.22 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.08 Total: -16.68 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.21 -6.26 -36.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493136349.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.925 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds