Wall clock time and date at job start Mon Mar 30 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37798 * 119.92549 * 2 1 4 4 C 1.39916 * 119.84636 * 179.97438 * 3 2 1 5 5 C 1.47054 * 120.14514 * 179.97438 * 4 3 2 6 6 C 1.35045 * 120.00025 * 180.02562 * 5 4 3 7 7 C 1.46149 * 120.00053 * 180.02562 * 6 5 4 8 8 O 1.21767 * 119.99952 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00133 * 179.97438 * 7 6 5 10 10 C 1.36735 * 119.99936 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00301 * 0.02562 * 10 9 7 12 12 C 1.39113 * 119.99896 * 180.02562 * 10 9 7 13 13 N 1.31329 * 120.00161 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00160 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46963 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46993 * 119.99404 * 14 12 10 17 17 H 1.48496 * 109.47112 * 239.99939 * 14 12 10 18 18 C 1.39946 * 119.70914 * 0.02562 * 4 3 2 19 19 C 1.37759 * 119.84953 * 0.02562 * 18 4 3 20 20 C 1.38675 * 119.92580 * 180.02562 * 2 1 3 21 21 F 1.35106 * 119.85114 * 359.72915 * 20 2 1 22 22 H 1.08998 * 109.47271 * 269.97687 * 1 2 3 23 23 H 1.09004 * 109.47035 * 29.98016 * 1 2 3 24 24 H 1.09004 * 109.47139 * 149.97361 * 1 2 3 25 25 H 1.07999 * 120.07718 * 359.97438 * 3 2 1 26 26 H 1.08005 * 119.99593 * 0.02562 * 5 4 3 27 27 H 1.08005 * 120.00386 * 359.97438 * 6 5 4 28 28 H 0.96994 * 120.00453 * 0.02562 * 9 7 6 29 29 H 0.96998 * 120.00585 * 179.97438 * 13 12 10 30 30 H 1.08005 * 120.07580 * 179.97438 * 18 4 3 31 31 H 1.08004 * 119.92826 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1943 0.0000 4 6 3.5936 1.1923 0.0005 5 6 4.3338 2.4630 0.0000 6 6 5.6843 2.4577 0.0000 7 6 6.4200 3.7205 0.0000 8 8 5.8153 4.7774 -0.0005 9 7 7.7677 3.7153 0.0005 10 6 8.4560 4.8967 0.0000 11 1 7.9197 5.8341 -0.0004 12 6 9.8471 4.8913 0.0000 13 7 10.4994 3.7514 0.0010 14 14 10.7875 6.5054 0.0000 15 1 9.8269 7.6379 0.0006 16 1 11.6414 6.5807 1.2126 17 1 11.6415 6.5807 -1.2125 18 6 4.2855 -0.0241 0.0005 19 6 3.5859 -1.2109 -0.0005 20 6 2.1988 -1.2019 -0.0005 21 9 1.5187 -2.3693 0.0045 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5143 25 1 1.6545 2.1296 -0.0004 26 1 3.7974 3.4004 -0.0004 27 1 6.2207 1.5203 0.0008 28 1 8.2495 2.8734 0.0005 29 1 11.4693 3.7476 0.0006 30 1 5.3655 -0.0325 0.0005 31 1 4.1186 -2.1504 -0.0010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493136349.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:39 Heat of formation + Delta-G solvation = -73.332752 kcal Electronic energy + Delta-G solvation = -16467.003787 eV Core-core repulsion = 13433.820432 eV Total energy + Delta-G solvation = -3033.183355 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.91746 -40.44356 -39.85276 -36.19515 -35.08576 -33.40775 -33.28715 -30.65645 -27.89790 -27.26892 -24.65683 -23.49397 -21.82497 -20.38896 -19.53727 -18.67083 -18.16421 -17.29058 -16.68937 -16.61603 -16.13313 -15.76091 -15.37676 -15.16490 -14.79371 -14.36345 -14.27021 -14.05071 -13.67171 -13.48212 -13.19862 -12.96501 -12.84878 -12.56874 -12.46043 -12.11360 -11.83839 -11.61678 -11.01433 -10.49899 -10.11124 -9.89682 -9.08479 -8.56258 -5.98841 -0.48898 0.25293 0.94504 1.41684 1.42832 1.56361 2.27257 2.38436 2.75908 3.16572 3.24248 3.28140 3.67143 3.80671 3.84497 4.17189 4.22940 4.27848 4.50376 4.65835 4.76056 4.82846 4.95365 5.09842 5.16127 5.19911 5.28075 5.34001 5.48922 5.65872 5.88859 5.97204 6.52213 7.04044 7.46664 8.04863 8.60923 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.056357 B = 0.003620 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.713918 B = 7733.434933 C = 8215.003757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.073 4.073 5 C -0.051 4.051 6 C -0.177 4.177 7 C 0.450 3.550 8 O -0.648 6.648 9 N -0.551 5.551 10 C -0.337 4.337 11 H 0.083 0.917 12 C -0.010 4.010 13 N -0.909 5.909 14 Si 0.998 3.002 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.268 1.268 18 C -0.091 4.091 19 C -0.147 4.147 20 C 0.081 3.919 21 F -0.142 7.142 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.152 0.848 26 H 0.122 0.878 27 H 0.146 0.854 28 H 0.399 0.601 29 H 0.282 0.718 30 H 0.149 0.851 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.785 -11.413 0.016 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.124 4.124 3 C -0.097 4.097 4 C -0.073 4.073 5 C -0.072 4.072 6 C -0.198 4.198 7 C 0.241 3.759 8 O -0.539 6.539 9 N -0.185 5.185 10 C -0.466 4.466 11 H 0.101 0.899 12 C -0.211 4.211 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.196 1.196 16 H -0.193 1.193 17 H -0.193 1.193 18 C -0.109 4.109 19 C -0.166 4.166 20 C 0.062 3.938 21 F -0.121 7.121 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.169 0.831 26 H 0.139 0.861 27 H 0.164 0.836 28 H 0.233 0.767 29 H 0.092 0.908 30 H 0.166 0.834 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.936 -10.821 0.016 17.644 hybrid contribution 0.886 0.122 0.002 0.894 sum -13.050 -10.699 0.019 16.875 Atomic orbital electron populations 1.20800 0.88294 1.04165 1.03707 1.20103 0.98413 0.91258 1.02581 1.21328 0.92477 0.98317 0.97615 1.19112 0.93750 0.92439 1.01987 1.22113 0.93497 0.96534 0.95069 1.22967 0.95521 0.96604 1.04712 1.18637 0.82595 0.90300 0.84321 1.90599 1.69021 1.34900 1.59386 1.41884 1.05223 1.09241 1.62109 1.19812 0.89869 0.87216 1.49735 0.89947 1.26183 0.96865 1.02423 0.95619 1.69629 1.09779 1.27104 1.48366 0.84803 0.77702 0.76863 0.78575 1.19641 1.19288 1.19269 1.21483 1.01284 0.90593 0.97539 1.21254 0.92006 1.00369 1.02931 1.17922 0.90378 0.81083 1.04407 1.91461 1.80226 1.46442 1.93947 0.89811 0.89427 0.91024 0.83075 0.86055 0.83622 0.76661 0.90787 0.83392 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.83 71.24 0.70 -0.97 16 2 C -0.12 -2.50 5.88 -19.86 -0.12 -2.61 16 3 C -0.08 -1.75 9.44 22.57 0.21 -1.53 16 4 C -0.07 -1.88 5.87 -20.15 -0.12 -2.00 16 5 C -0.05 -1.65 9.46 23.85 0.23 -1.42 16 6 C -0.18 -6.53 9.40 23.59 0.22 -6.31 16 7 C 0.45 22.43 7.68 86.30 0.66 23.10 16 8 O -0.65 -37.30 15.80 -4.56 -0.07 -37.37 16 9 N -0.55 -28.90 5.27 -311.11 -1.64 -30.54 16 10 C -0.34 -19.20 9.68 84.14 0.81 -18.38 16 11 H 0.08 5.01 7.15 -2.91 -0.02 4.99 16 12 C -0.01 -0.50 5.50 84.98 0.47 -0.03 16 13 N -0.91 -48.18 13.05 21.69 0.28 -47.90 16 14 Si 1.00 42.06 29.55 68.60 2.03 44.09 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 C -0.09 -2.09 9.41 22.57 0.21 -1.88 16 19 C -0.15 -3.03 10.01 22.27 0.22 -2.81 16 20 C 0.08 1.76 7.25 22.49 0.16 1.93 16 21 F -0.14 -3.10 16.46 44.97 0.74 -2.36 16 22 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.09 1.04 8.08 -2.38 -0.02 1.02 16 24 H 0.07 1.02 7.63 -2.38 -0.02 1.01 16 25 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.12 4.21 7.52 -2.91 -0.02 4.19 16 27 H 0.15 4.37 6.07 -2.91 -0.02 4.35 16 28 H 0.40 19.61 7.87 -92.71 -0.73 18.88 16 29 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.15 3.04 6.17 -2.91 -0.02 3.02 16 31 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -66.63 283.91 5.45 -61.18 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.44 Total: 25.82 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 3.67 Total: -12.92 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -1.36 Total: -78.44 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.07 Total: -37.37 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.74 Total: -2.36 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.63 5.45 -61.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493136349.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.149 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds