Wall clock time and date at job start Mon Mar 30 2020 18:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05809 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94633 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47660 * 260.00284 * 7 6 5 9 9 C 1.34778 * 120.00235 * 179.97438 * 8 7 6 10 10 O 1.21683 * 120.00152 * 0.02562 * 9 8 7 11 11 C 1.46382 * 119.99710 * 180.02562 * 9 8 7 12 12 H 1.07997 * 120.00108 * 0.02562 * 11 9 8 13 13 C 1.40049 * 119.99583 * 180.02562 * 11 9 8 14 14 N 1.30676 * 120.00216 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99905 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46980 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46957 * 119.99796 * 15 13 11 18 18 H 1.48497 * 109.47065 * 240.00025 * 15 13 11 19 19 C 1.38246 * 120.11014 * 0.02562 * 6 5 4 20 20 C 1.50704 * 119.97128 * 180.02562 * 19 6 5 21 21 C 1.38162 * 120.05734 * 359.76698 * 19 6 5 22 22 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 23 23 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 25 25 H 1.08002 * 120.02961 * 0.02562 * 4 3 2 26 26 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.47210 * 20.00581 * 7 6 5 28 28 H 1.09000 * 109.47309 * 139.99621 * 7 6 5 29 29 H 0.97005 * 120.00049 * 0.02562 * 8 7 6 30 30 H 0.97000 * 120.00017 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.46973 * 90.00063 * 20 19 6 32 32 H 1.08992 * 109.47226 * 210.00189 * 20 19 6 33 33 H 1.09000 * 109.46823 * 330.00052 * 20 19 6 34 34 H 1.07998 * 120.02953 * 180.25220 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.4208 5.3452 -1.3608 9 6 5.0599 6.5067 -1.6034 10 8 5.2762 7.2840 -0.6924 11 6 5.4939 6.8332 -2.9627 12 1 5.3016 6.1436 -3.7713 13 6 6.1585 8.0400 -3.2147 14 7 6.3907 8.8746 -2.2364 15 14 6.7129 8.4564 -4.9492 16 1 6.3331 7.3536 -5.8685 17 1 6.0594 9.7153 -5.3889 18 1 8.1875 8.6310 -4.9690 19 6 4.0559 2.5172 -0.0011 20 6 5.5607 2.5983 -0.0011 21 6 3.4311 1.2849 0.0038 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2127 2.3204 0.0014 26 1 1.3339 4.5114 0.0008 27 1 3.2907 5.7807 0.3515 28 1 4.8526 4.9848 0.6597 29 1 4.2481 4.7258 -2.0871 30 1 6.8514 9.7103 -2.4109 31 1 5.9236 2.6173 1.0266 32 1 5.9714 1.7294 -0.5153 33 1 5.8756 3.5067 -0.5145 34 1 4.0206 0.3800 0.0075 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548131153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:47 Heat of formation + Delta-G solvation = -84.708355 kcal Electronic energy + Delta-G solvation = -17469.768247 eV Core-core repulsion = 14559.551914 eV Total energy + Delta-G solvation = -2910.216334 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26051 -39.61028 -38.57799 -35.24265 -34.42731 -33.47271 -31.75434 -29.27929 -28.22268 -27.44938 -25.94754 -23.17365 -21.95042 -21.40081 -19.30627 -18.66005 -17.48754 -17.46782 -16.68170 -16.55929 -16.01351 -15.58358 -15.48489 -14.93099 -14.54366 -14.49571 -14.18328 -14.13498 -13.30200 -13.15692 -13.04681 -12.97791 -12.76547 -12.68447 -12.62700 -12.17611 -11.96330 -11.81774 -11.72218 -10.93692 -9.92667 -9.76399 -9.47235 -9.09611 -8.27256 -6.84437 0.32059 0.37158 1.41214 1.41384 1.59410 2.25897 2.35889 2.48309 2.64426 3.36818 3.62191 3.80429 3.81899 3.95922 4.17848 4.32668 4.40855 4.42418 4.45747 4.68623 4.73511 4.76985 4.78443 4.87482 5.02477 5.16795 5.33136 5.33358 5.40820 5.71949 5.76789 5.88943 6.21606 6.28341 6.44459 6.88005 7.55310 8.50009 8.68459 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038295 B = 0.004381 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.998369 B = 6389.839714 C = 6468.668464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.127 3.873 4 C -0.211 4.211 5 C -0.066 4.066 6 C -0.145 4.145 7 C 0.183 3.817 8 N -0.746 5.746 9 C 0.539 3.461 10 O -0.632 6.632 11 C -0.572 4.572 12 H 0.086 0.914 13 C 0.029 3.971 14 N -0.822 5.822 15 Si 0.998 3.002 16 H -0.248 1.248 17 H -0.268 1.268 18 H -0.268 1.268 19 C -0.032 4.032 20 C -0.121 4.121 21 C -0.161 4.161 22 H 0.063 0.937 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.153 0.847 26 H 0.131 0.869 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.392 0.608 30 H 0.274 0.726 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 -17.177 1.434 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.081 3.919 4 C -0.230 4.230 5 C -0.084 4.084 6 C -0.146 4.146 7 C 0.059 3.941 8 N -0.400 5.400 9 C 0.343 3.657 10 O -0.520 6.520 11 C -0.609 4.609 12 H 0.104 0.896 13 C -0.186 4.186 14 N -0.451 5.451 15 Si 0.818 3.182 16 H -0.171 1.171 17 H -0.193 1.193 18 H -0.193 1.193 19 C -0.033 4.033 20 C -0.177 4.177 21 C -0.180 4.180 22 H 0.082 0.918 23 H 0.139 0.861 24 H 0.083 0.917 25 H 0.171 0.829 26 H 0.149 0.851 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.225 0.775 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.733 -16.663 2.189 19.421 hybrid contribution -0.029 0.480 -0.641 0.801 sum -9.762 -16.183 1.549 18.963 Atomic orbital electron populations 1.23358 0.76429 1.05637 1.02283 1.86044 1.23491 1.26418 1.88555 1.19120 0.92374 0.84685 0.95687 1.21375 1.01155 0.91286 1.09160 1.21008 0.93288 0.98195 0.95953 1.19713 0.94243 0.93707 1.06936 1.19625 0.96613 0.92128 0.85758 1.45873 1.63594 1.22003 1.08545 1.18620 0.77227 0.79727 0.90125 1.90551 1.61861 1.51407 1.48142 1.21446 1.40192 1.05854 0.93393 0.89626 1.26968 0.93373 0.94860 1.03403 1.70196 1.31361 1.08341 1.35222 0.84964 0.78257 0.79063 0.75939 1.17107 1.19332 1.19280 1.19683 0.96508 0.91501 0.95580 1.20899 0.90379 1.03353 1.03096 1.20395 0.91834 0.97930 1.07826 0.91848 0.86099 0.91689 0.82912 0.85078 0.94325 0.93933 0.77478 0.91570 0.90165 0.89433 0.92608 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.05 10.50 -92.48 -0.97 -8.02 16 3 C 0.13 3.10 6.69 22.51 0.15 3.25 16 4 C -0.21 -4.93 9.04 22.36 0.20 -4.73 16 5 C -0.07 -1.84 9.66 22.25 0.21 -1.63 16 6 C -0.15 -4.71 5.25 -19.85 -0.10 -4.81 16 7 C 0.18 7.51 4.92 85.63 0.42 7.93 16 8 N -0.75 -34.72 4.88 -471.15 -2.30 -37.02 16 9 C 0.54 31.85 7.75 86.36 0.67 32.52 16 10 O -0.63 -43.09 15.02 -4.30 -0.06 -43.15 16 11 C -0.57 -32.92 9.54 24.83 0.24 -32.68 16 12 H 0.09 4.45 7.85 -2.91 -0.02 4.42 16 13 C 0.03 1.63 5.50 85.30 0.47 2.10 16 14 N -0.82 -50.79 11.83 21.84 0.26 -50.53 16 15 Si 1.00 41.31 29.56 68.60 2.03 43.34 16 16 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 19 C -0.03 -0.94 5.88 -19.88 -0.12 -1.05 16 20 C -0.12 -3.38 9.26 71.24 0.66 -2.72 16 21 C -0.16 -4.15 9.64 22.37 0.22 -3.93 16 22 H 0.06 0.70 7.66 -2.39 -0.02 0.69 16 23 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 25 H 0.15 2.62 6.30 -2.91 -0.02 2.60 16 26 H 0.13 3.45 8.03 -2.91 -0.02 3.42 16 27 H 0.04 1.68 8.00 -2.38 -0.02 1.66 16 28 H 0.04 1.86 7.28 -2.39 -0.02 1.84 16 29 H 0.39 16.35 8.44 -92.70 -0.78 15.56 16 30 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 33 H 0.05 1.91 6.33 -2.39 -0.02 1.90 16 34 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -76.58 294.32 3.42 -73.16 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.33 Total: 26.65 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 4.13 Total: -4.42 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -2.04 Total: -87.55 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -1.04 Total: -51.17 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -76.58 3.42 -73.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548131153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.550 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds