Wall clock time and date at job start Mon Mar 30 2020 18:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38164 * 119.97643 * 2 1 4 4 C 1.38172 * 120.12506 * 180.25931 * 3 2 1 5 5 C 1.38809 * 120.08494 * 359.44616 * 4 3 2 6 6 O 1.35900 * 120.02278 * 180.29974 * 5 4 3 7 7 C 1.38593 * 119.95445 * 0.27953 * 5 4 3 8 8 C 1.38791 * 119.87639 * 359.97438 * 7 5 4 9 9 N 1.39922 * 120.04151 * 180.02562 * 8 7 5 10 10 C 1.34778 * 119.99736 * 325.27912 * 9 8 7 11 11 O 1.21286 * 120.00413 * 4.49991 * 10 9 8 12 12 C 1.50702 * 119.99511 * 184.50042 * 10 9 8 13 13 C 1.52998 * 109.47058 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47438 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00024 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99826 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99631 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00221 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47303 * 90.00320 * 18 16 14 20 20 H 1.48507 * 109.47182 * 209.99533 * 18 16 14 21 21 H 1.48493 * 109.47277 * 329.99568 * 18 16 14 22 22 H 1.09012 * 109.46839 * 270.29039 * 1 2 3 23 23 H 1.08993 * 109.47565 * 30.29504 * 1 2 3 24 24 H 1.08998 * 109.47098 * 150.29650 * 1 2 3 25 25 H 1.08002 * 119.94226 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.96056 * 179.72762 * 4 3 2 27 27 H 0.96692 * 113.99629 * 89.99978 * 6 5 4 28 28 H 1.07999 * 120.05857 * 179.97438 * 7 5 4 29 29 H 0.96997 * 119.99961 * 145.27293 * 9 8 7 30 30 H 1.09002 * 109.47520 * 299.99680 * 12 10 9 31 31 H 1.08994 * 109.47268 * 60.00041 * 12 10 9 32 32 H 1.09006 * 109.46905 * 300.00226 * 13 12 10 33 33 H 1.08999 * 109.47702 * 59.99606 * 13 12 10 34 34 H 0.96999 * 120.00248 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5790 1.2004 -0.0054 5 6 4.2780 0.0012 0.0007 6 8 5.6370 0.0062 0.0016 7 6 3.5890 -1.2014 0.0065 8 6 2.2011 -1.2030 0.0066 9 7 1.5020 -2.4150 0.0129 10 6 1.9964 -3.4815 -0.6465 11 8 3.0853 -3.4155 -1.1765 12 6 1.1960 -4.7560 -0.7251 13 6 1.9786 -5.8012 -1.5226 14 6 1.1786 -7.0760 -1.6007 15 1 0.2091 -7.1349 -1.1285 16 6 1.6844 -8.1670 -2.2751 17 7 0.9859 -9.2793 -2.3438 18 14 3.3614 -8.0653 -3.0913 19 1 4.4079 -8.4893 -2.1269 20 1 3.3899 -8.9591 -4.2770 21 1 3.6198 -6.6670 -3.5192 22 1 -0.3633 0.0052 1.0278 23 1 -0.3634 0.8872 -0.5184 24 1 -0.3633 -0.8926 -0.5092 25 1 1.6560 2.1314 -0.0004 26 1 4.1159 2.1375 -0.0098 27 1 6.0297 0.0119 0.8852 28 1 4.1311 -2.1354 0.0109 29 1 0.6617 -2.4877 0.4919 30 1 1.0107 -5.1314 0.2813 31 1 0.2452 -4.5580 -1.2199 32 1 2.1644 -5.4261 -2.5290 33 1 2.9293 -5.9991 -1.0275 34 1 1.3418 -10.0470 -2.8179 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600418889.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:10 Heat of formation + Delta-G solvation = -64.998619 kcal Electronic energy + Delta-G solvation = -17451.639688 eV Core-core repulsion = 14542.278032 eV Total energy + Delta-G solvation = -2909.361655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62113 -38.95548 -37.11907 -34.38226 -33.58539 -31.90009 -31.47127 -29.78445 -26.66918 -25.93066 -23.25900 -21.68991 -21.04804 -19.82447 -18.70473 -17.34517 -16.38693 -16.29385 -15.75911 -15.70601 -14.86842 -14.63077 -14.12785 -13.93451 -13.60604 -13.38441 -12.98119 -12.75154 -12.59972 -12.01683 -11.84380 -11.58463 -11.47991 -11.01822 -10.80191 -10.29307 -10.24272 -10.09161 -9.81638 -9.33244 -9.23173 -8.65077 -8.54145 -8.07544 -6.06329 -4.05718 1.09995 1.27596 2.87914 3.19789 3.36043 3.43073 3.53783 3.55414 4.18047 4.48213 4.70304 4.83457 5.02204 5.14836 5.24480 5.29133 5.40377 5.43199 5.62193 5.78381 5.87790 5.95282 5.97856 6.15947 6.33091 6.36165 6.45704 6.59004 6.89357 7.29318 7.36453 7.51462 7.60018 7.73846 8.37665 8.49270 8.95906 9.56430 11.06376 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031838 B = 0.004870 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.254614 B = 5748.624240 C = 6488.251277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.128 4.128 3 C -0.088 4.088 4 C -0.165 4.165 5 C 0.115 3.885 6 O -0.497 6.497 7 C -0.147 4.147 8 C 0.171 3.829 9 N -0.682 5.682 10 C 0.508 3.492 11 O -0.516 6.516 12 C -0.120 4.120 13 C 0.001 3.999 14 C -0.527 4.527 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.902 5.902 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.261 1.261 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.388 0.612 28 H 0.148 0.852 29 H 0.411 0.589 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.020 0.980 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 21.382 8.576 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.184 4.184 5 C 0.070 3.930 6 O -0.307 6.307 7 C -0.168 4.168 8 C 0.075 3.925 9 N -0.328 5.328 10 C 0.298 3.702 11 O -0.389 6.389 12 C -0.160 4.160 13 C -0.037 4.037 14 C -0.565 4.565 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.541 5.541 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.185 1.185 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.146 0.854 26 H 0.144 0.856 27 H 0.243 0.757 28 H 0.165 0.835 29 H 0.247 0.753 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.412 21.136 7.466 22.461 hybrid contribution 0.552 -0.097 0.267 0.621 sum 1.964 21.039 7.733 22.501 Atomic orbital electron populations 1.20719 0.90769 1.03259 1.02252 1.19737 0.96316 0.91765 1.05226 1.20654 0.93379 0.96988 0.99663 1.21312 0.94470 0.97637 1.05010 1.18283 0.82854 0.91820 1.00000 1.84844 1.16066 1.96474 1.33277 1.21620 0.93187 0.99405 1.02551 1.17472 0.90795 0.85352 0.98834 1.43887 1.26064 1.09565 1.53311 1.21869 0.87140 0.85104 0.76080 1.90674 1.21021 1.82752 1.44498 1.21714 0.99750 0.90931 1.03627 1.19393 0.95620 0.93191 0.95510 1.21074 1.05207 0.95136 1.35042 0.90866 1.24958 0.97409 0.95136 0.95612 1.69906 1.38159 1.02983 1.43048 0.86807 0.84680 0.78782 0.79369 1.20198 1.21367 1.18536 0.91178 0.91181 0.91395 0.85442 0.85623 0.75663 0.83456 0.75289 0.89166 0.89119 0.95702 0.96168 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.47 36.00 0.34 -0.60 16 2 C -0.13 -1.45 5.90 -104.41 -0.62 -2.06 16 3 C -0.09 -0.91 9.69 -39.63 -0.38 -1.29 16 4 C -0.16 -1.84 9.98 -39.39 -0.39 -2.24 16 5 C 0.12 1.54 6.70 -39.24 -0.26 1.28 16 6 O -0.50 -6.11 13.50 -19.43 -0.26 -6.37 16 7 C -0.15 -2.26 8.64 -39.25 -0.34 -2.60 16 8 C 0.17 2.39 6.28 -83.72 -0.53 1.86 16 9 N -0.68 -9.29 4.74 -9.88 -0.05 -9.34 16 10 C 0.51 9.06 7.67 -10.98 -0.08 8.98 16 11 O -0.52 -11.23 13.40 5.55 0.07 -11.16 16 12 C -0.12 -2.24 5.64 -27.88 -0.16 -2.40 16 13 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 14 C -0.53 -14.87 9.66 -34.44 -0.33 -15.20 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 18 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 22 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 23 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 24 H 0.07 0.59 7.17 -51.93 -0.37 0.22 16 25 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 26 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 27 H 0.39 2.67 9.06 45.56 0.41 3.09 16 28 H 0.15 2.60 6.20 -52.49 -0.33 2.28 16 29 H 0.41 4.14 7.85 -40.82 -0.32 3.82 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 33 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 292.14 15.07 4.40 4.40 Total: -1.00 -35.21 292.14 -6.16 -41.37 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.49 Total: 2.62 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -2.94 Total: -12.37 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.73 Total: -36.35 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.19 Total: -17.53 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.21 -6.16 -41.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600418889.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.625 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds