Wall clock time and date at job start Mon Mar 30 2020 18:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38164 * 119.97643 * 2 1 4 4 C 1.38172 * 120.12506 * 180.25931 * 3 2 1 5 5 C 1.38809 * 120.08494 * 359.44616 * 4 3 2 6 6 O 1.35900 * 120.02278 * 180.29974 * 5 4 3 7 7 C 1.38593 * 119.95445 * 0.27953 * 5 4 3 8 8 C 1.38791 * 119.87639 * 359.97438 * 7 5 4 9 9 N 1.39922 * 120.04151 * 180.02562 * 8 7 5 10 10 C 1.34778 * 119.99736 * 325.27912 * 9 8 7 11 11 O 1.21286 * 120.00413 * 4.49991 * 10 9 8 12 12 C 1.50702 * 119.99511 * 184.50042 * 10 9 8 13 13 C 1.52998 * 109.47058 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47438 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00024 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99826 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99631 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00221 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47303 * 90.00320 * 18 16 14 20 20 H 1.48507 * 109.47182 * 209.99533 * 18 16 14 21 21 H 1.48493 * 109.47277 * 329.99568 * 18 16 14 22 22 H 1.09012 * 109.46839 * 270.29039 * 1 2 3 23 23 H 1.08993 * 109.47565 * 30.29504 * 1 2 3 24 24 H 1.08998 * 109.47098 * 150.29650 * 1 2 3 25 25 H 1.08002 * 119.94226 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.96056 * 179.72762 * 4 3 2 27 27 H 0.96692 * 113.99629 * 89.99978 * 6 5 4 28 28 H 1.07999 * 120.05857 * 179.97438 * 7 5 4 29 29 H 0.96997 * 119.99961 * 145.27293 * 9 8 7 30 30 H 1.09002 * 109.47520 * 299.99680 * 12 10 9 31 31 H 1.08994 * 109.47268 * 60.00041 * 12 10 9 32 32 H 1.09006 * 109.46905 * 300.00226 * 13 12 10 33 33 H 1.08999 * 109.47702 * 59.99606 * 13 12 10 34 34 H 0.96999 * 120.00248 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5790 1.2004 -0.0054 5 6 4.2780 0.0012 0.0007 6 8 5.6370 0.0062 0.0016 7 6 3.5890 -1.2014 0.0065 8 6 2.2011 -1.2030 0.0066 9 7 1.5020 -2.4150 0.0129 10 6 1.9964 -3.4815 -0.6465 11 8 3.0853 -3.4155 -1.1765 12 6 1.1960 -4.7560 -0.7251 13 6 1.9786 -5.8012 -1.5226 14 6 1.1786 -7.0760 -1.6007 15 1 0.2091 -7.1349 -1.1285 16 6 1.6844 -8.1670 -2.2751 17 7 0.9859 -9.2793 -2.3438 18 14 3.3614 -8.0653 -3.0913 19 1 4.4079 -8.4893 -2.1269 20 1 3.3899 -8.9591 -4.2770 21 1 3.6198 -6.6670 -3.5192 22 1 -0.3633 0.0052 1.0278 23 1 -0.3634 0.8872 -0.5184 24 1 -0.3633 -0.8926 -0.5092 25 1 1.6560 2.1314 -0.0004 26 1 4.1159 2.1375 -0.0098 27 1 6.0297 0.0119 0.8852 28 1 4.1311 -2.1354 0.0109 29 1 0.6617 -2.4877 0.4919 30 1 1.0107 -5.1314 0.2813 31 1 0.2452 -4.5580 -1.2199 32 1 2.1644 -5.4261 -2.5290 33 1 2.9293 -5.9991 -1.0275 34 1 1.3418 -10.0470 -2.8179 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600418889.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:10 Heat of formation + Delta-G solvation = -91.062436 kcal Electronic energy + Delta-G solvation = -17452.769900 eV Core-core repulsion = 14542.278032 eV Total energy + Delta-G solvation = -2910.491867 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75683 -40.10595 -38.11692 -35.65553 -35.48907 -33.42040 -32.72872 -30.92975 -28.17315 -27.05025 -24.52621 -23.00146 -22.28425 -21.25793 -19.74953 -19.20429 -17.84802 -17.42622 -16.99269 -16.64800 -16.29181 -16.11813 -15.61071 -15.13154 -14.77909 -14.65035 -14.39230 -14.24164 -13.74637 -13.44074 -12.98358 -12.86923 -12.60178 -12.42193 -12.15358 -12.01532 -11.81502 -11.76568 -11.43305 -11.39173 -10.79774 -10.74856 -9.61300 -9.06243 -8.33417 -6.36122 0.16841 0.31311 1.30820 1.33533 1.47970 1.55056 2.03605 2.32793 2.64034 3.02534 3.29170 3.81817 3.93506 4.01413 4.18606 4.30956 4.42570 4.45145 4.53044 4.79127 4.85952 4.89371 4.96850 5.17608 5.27167 5.30920 5.39839 5.40524 5.46495 5.51494 5.58600 5.94176 6.20874 6.40137 6.70326 6.82955 7.12508 7.29448 8.82165 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031838 B = 0.004870 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.254614 B = 5748.624240 C = 6488.251277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.159 4.159 5 C 0.102 3.898 6 O -0.513 6.513 7 C -0.177 4.177 8 C 0.145 3.855 9 N -0.660 5.660 10 C 0.513 3.487 11 O -0.563 6.563 12 C -0.113 4.113 13 C 0.003 3.997 14 C -0.528 4.528 15 H 0.054 0.946 16 C 0.017 3.983 17 N -0.942 5.942 18 Si 0.935 3.065 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.265 1.265 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.166 0.834 26 H 0.151 0.849 27 H 0.408 0.592 28 H 0.113 0.887 29 H 0.429 0.571 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 24.173 9.148 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.124 4.124 3 C -0.100 4.100 4 C -0.178 4.178 5 C 0.057 3.943 6 O -0.325 6.325 7 C -0.198 4.198 8 C 0.050 3.950 9 N -0.307 5.307 10 C 0.303 3.697 11 O -0.441 6.441 12 C -0.152 4.152 13 C -0.035 4.035 14 C -0.566 4.566 15 H 0.072 0.928 16 C -0.181 4.181 17 N -0.582 5.582 18 Si 0.759 3.241 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.189 1.189 22 H 0.110 0.890 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.183 0.817 26 H 0.169 0.831 27 H 0.267 0.733 28 H 0.131 0.869 29 H 0.268 0.732 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.733 23.959 8.087 25.298 hybrid contribution 0.718 -0.862 0.160 1.133 sum 1.451 23.097 8.246 24.568 Atomic orbital electron populations 1.20823 0.88362 1.03981 1.03861 1.20103 0.98024 0.90867 1.03408 1.21134 0.93144 0.98069 0.97680 1.21628 0.95156 0.97556 1.03447 1.18455 0.83225 0.92064 1.00545 1.84779 1.15957 1.96468 1.35337 1.21545 0.94199 0.98950 1.05127 1.17668 0.90519 0.86060 1.00734 1.43494 1.26354 1.08700 1.52172 1.21565 0.86301 0.85738 0.76116 1.90670 1.22886 1.83601 1.46894 1.21525 0.99582 0.90111 1.04010 1.19242 0.95379 0.93268 0.95566 1.21401 1.04737 0.96555 1.33916 0.92751 1.25742 1.00810 0.95016 0.96537 1.70010 1.39949 1.03824 1.44443 0.85887 0.80765 0.78552 0.78849 1.19396 1.20299 1.18909 0.89017 0.89324 0.91850 0.81650 0.83137 0.73329 0.86909 0.73172 0.87115 0.87169 0.97295 0.97299 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.47 71.24 0.67 -0.77 16 2 C -0.12 -2.39 5.90 -19.73 -0.12 -2.50 16 3 C -0.08 -1.37 9.69 22.24 0.22 -1.15 16 4 C -0.16 -3.11 9.98 22.39 0.22 -2.89 16 5 C 0.10 2.67 6.70 22.49 0.15 2.82 16 6 O -0.51 -12.48 13.50 -92.43 -1.25 -13.73 16 7 C -0.18 -5.55 8.64 22.49 0.19 -5.36 16 8 C 0.14 3.90 6.28 38.14 0.24 4.14 16 9 N -0.66 -17.29 4.74 -303.55 -1.44 -18.73 16 10 C 0.51 18.27 7.67 87.66 0.67 18.94 16 11 O -0.56 -25.28 13.40 -3.05 -0.04 -25.32 16 12 C -0.11 -4.12 5.64 29.85 0.17 -3.95 16 13 C 0.00 0.17 3.33 29.85 0.10 0.27 16 14 C -0.53 -30.16 9.66 25.60 0.25 -29.91 16 15 H 0.05 3.24 7.99 -2.91 -0.02 3.21 16 16 C 0.02 1.00 5.47 84.65 0.46 1.47 16 17 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 18 Si 0.93 47.03 27.47 68.60 1.88 48.92 16 19 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.26 -13.37 6.54 99.48 0.65 -12.72 16 22 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 24 H 0.06 0.89 7.17 -2.39 -0.02 0.87 16 25 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 26 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 27 H 0.41 5.50 9.06 -74.06 -0.67 4.83 16 28 H 0.11 4.28 6.20 -2.91 -0.02 4.26 16 29 H 0.43 7.75 7.85 -92.71 -0.73 7.02 16 30 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 31 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 32 H 0.01 0.46 7.16 -2.38 -0.02 0.44 16 33 H 0.01 0.44 7.53 -2.39 -0.02 0.43 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -78.11 292.14 2.36 -75.75 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -0.32 Total: 10.45 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 3.23 Total: -18.90 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.14 Total: -77.16 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.29 Total: -39.05 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.88 Total: 48.92 kcal Total: -78.11 2.36 -75.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600418889.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.316 kcal (2) G-P(sol) polarization free energy of solvation -78.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds